Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCGAAACTCCAGTATTTATTGTACGCCGTCGTTGAATAAGAATCTGTGTTTGTTTAAAGATCGTGTTACGCAGATAAGTCAGCTTCTCTCTCCTCTTCACCCTTTCTCGCACAACAATCAGAATTTTGCAGAGCCCCAAATTGGAGCTCCAGAAATTGAAAAGGGGTTCTTTTGGTCGAATTAGGAGGGTAGAATTTATTAATTATGGACCAGATTTTCAATAAGGTTGGATCTTACTGGTTGGGTCAAAAGGCTAACAAAGAGTTCAATTCCGTCGGCGATGACATTAATGTAAGCCTCCTTTTTCTTCCTTGTTTGAAATTTACACCAATTTTCGGAAGTTTCAATTTTAGGGTTCTTCTCTGCTGTCAATTGTTGGTGTCCTCTGAAATTAATCTCTCAATCTGACATATCATGTGCTTTTGTTGCTCAATTATGTGTTTGTTGATGTATTTATATACTCCATACATTAATTTTGAATTTCATTGATGGTGCATTTTGTTTCTCTGAATTTATAATTGATATGATTAATTAGTGGGTTTTAGAGTAATAGGTTAATAGAATTTTAAGATGTTGAACAGTTGAAGTGATTTTATGAACCTTGATTTTACGCTGTTCTCTAGATGTCGAAGAGCTTTTTTATTTATTTGGTAGGTGTAATTTGAGTGAAGGTCTTATCCTGTTCCTTCTTATGTTTTCGTACTGTTGGTATCGTAAATATTAAGACACACAACATAATGAGAAATTGATAAGCATAGATTATGAAGATTTGAAGCTTTTCGTAGTACTATATTCTCTGTCTTGAAGGCAATCTATTACGCAATTGTCAATAATTATGGAAATTGTATGATATCTGGACTTGTGTAGGATAATGTGAAATTTTATAGAAGTTTAGTTTAGTTTATTTATGAGAAATTCTAGATCATTGATTACTTGGAAAAAAATTCTATGGTATAATCCTTGCACTTAAAAGGGTTATAAACCATTGTATCCTTAATGTAGTGGTAATAGCGCGGGGTATGCCCATAATTTGTAGTTTTAGGCTTCTGCAAATGGTTTTTGTAGGATTTTCGTTGTACAAAATTGGGTGTGTTACACAATTTCAGTAGGAGTTCTTATAATAAGCTTGCCGTCTGGGCTATGACTCTGTGAGCTAGTATTGTTGCATCTAGAGCAGAGATTATTGATCTATTTCTTTAAGAAATTGTCGAATATTCCTGCGTATCTTATCTTTTGATTGCAAATTTGCAATCTGCCAGTCTTAGATGATCTATTTTGGATAGTTCTACTGGAGGTTGATTATAGTGCATTTAATTTATGTATTGATATAACTTTAACACTAAGAAGGGAAGCAAGGAACAACTAGATTACGAATTTCTTATAATTTAATATAGGTGATTCTTGATTTCACTGATGTGTATGCTTAGATTCTTTCTAGTCAAACGTATTTATTGGCCGAATTGTATTGATTGCAATATATGCCAGTATTTTCCTAGTAGTATATTACTAAATCACTGTGATACAAAGAAGAAAAACAGGTGAATTGTTCACTGGCTGCTGTTGTAGTGCTAATAGGCTTTTAAAGCAAAATATTAATAATTTGGAGGTGCACAACTATCTTGCCGAAGTTTTCACTATAAGGTATGGACGTTTTTTATTAGAAAGAAGGATTTGGTTAACTTTTAGTATCAATTTTACAACTCCAACATTACCTAAATACCTTTTAAGAGGATTACATCGGGCTAAGGGGAATTCAGGAGTACGTTGCCTCACCTAGGCAATAACTGATAGCTGCTTTTCATTAGACCCTTATCTGATCCATTTGCTACTTCACAATAAGTAAGAAACACTGATGGCTAATTGGTCTATTTTGATCTAGTCCAGTGTGGAAAATTCAATTGGAGATTTGAAGATCATATAGATACAGATTTATATATTATAAGAACACCATGCTAAACAGCTGTCTTAAGGAGTCTAGCAGCAAATTTCAAGGAAGGAAAGAAATTATACAGTCATCTCTTGAATATGACTCTCTCTCTCTCTATCAACCTTGACTTGAAATATGTTGATGGGCGGAGCTAAAATAGGAAACTTTAATATGTGGGATTTCATCATCAGGACATTGAATAAAACCAAACTTATTTCAGGGTAATAGAATAAGTGTGGATTAAGATCACATTTGGCATTAGAATCAAACTTTCAGATACTGAGAAGTTATGCTGACATCTTTTCTATCTCTTTGCATGAGGGTATCACAAATTAGTATTGTTTATAACGTGTTCTGTAGCAAGTGTCAACTAAATCTTATCTTGATGCGATGATTGTTTTTTGATATATGTTTCGTGTTAGATGTTTGCAATACTATGTTACTCCGTCTCTTCATTTGACCTCAAATACCCAAGTTGGATCTTTTACATTCTTATTTTTGACTTGTGTATGGACACTTGACATTTCATTGCGGATCAAAATTCAGGATATCTTTCATTAATTACCCAAGTCTTGTTTTTGGACACATACCCTCGAGTCCATGTAATATACTTCGTAGTTGCATTGCCAGCATGGCTGCATGTATAGTTTAACTGGAATCTGTTAGGTCATAATTTAGGTTTTTCACTACAGTGTTTGTACTGTTTTTTCAGTTCCTTTCTGATGATGATTTTTTATAGATTGTTTTTTGTATCAAAGTGGTGTGATTATGTTTTTATTTGCCACCGATCTAATACTACTAATTACCTTTCTGTAATTAGTCACTAGGAAGCAGCATTGGGGACAGCACCAAATGGTTGGTCAACAAATTTAAAGGTTTGGAATGCCTTCACATCCTCAATTTTGTTTCTTGCTGCTCAAGTTTTCGAATCTGCTTCAGTTTGAGGCCTTTGTGTGCCGGGCACTTGTTTCCCTTGTATGCCTTTGTTGTTTAAATTGAATAGTTTTTGCAGCTTCATGCACTGCAGATGCACAAGTTGTAAAAATGAAAAAATGAAAAAATCTACACCTGATACATGAGTGCTCTATGCTATCTTCAATTTAAGTGTGATATCGCTTTAATGTTTTCCTTTCTCTTTTTTATTTAAAAATTTGTGTTGGTTTATGCTTTCATGTTGGTTGATTACTGAGGAGTTAGGAGGCTAACAGGAGCACTGTGAGATGATATACCTATATGTGGTGTTCTGTTTTACCAAGCATATCCCGCATGCTTAGTTTTTCCTTGTGAATTACTCCGTATGAGGGAGCTGAATTATGTATTCCACTTAATTAACTGTTGCTATTTAGATATTGTGAGGTGTCAGTTGTTCATTTAAAGATTAACGAGGTAAACTTGCAGGGAAGATGCAGAAGCCCTTACCAGAGTTGCTAAAGGAATATGATTTGGCCGAGGGAATCTTCCCAAGGGATGCCACACACTACGAGTTTGATGAGAGGACGGGAAAACTTACAGTATATGTACCTCAAATATGTGAAGTGGGCTACAAGGATTCATCAGTGTTGCGATTTTTTACCACTGTAACTGGGTACCTTGAAAAGGGAAAGCTGGCTGATATAGAGGGGTTAAAGACAAAAGTAATGATCTGGGTCAAAGTTACTGCCATTACTTCTGAAGGTTCGAAGCTTTATTTTTCAGCTGGGGTGAAGAAAACCCGAAGCAGGGAGGCGTATCAGGTTCTTCGGGATGGAGTTGTTATAGAAAAGTTCTGACCTCATCTTAAACTATACGACATATGTTTGCTTGACAATGTATGTTTATCCTCGGTAATGTAATTGTGAATTTGCGAAATTTAACCTAAACTATAAGATCGATGTTTGTAACTGATACGTTACCTAATTAAGCTCAGGATATTATGATTTCATAAACGGGTATACAGTGCTTTTTCCGTCATGACATGTTCACCA TCCGAAACTCCAGTATTTATTGTACGCCGTCGTTGAATAAGAATCTGTGTTTGTTTAAAGATCGTGTTACGCAGATAAGTCAGCTTCTCTCTCCTCTTCACCCTTTCTCGCACAACAATCAGAATTTTGCAGAGCCCCAAATTGGAGCTCCAGAAATTGAAAAGGGGTTCTTTTGGTCGAATTAGGAGGGTAGAATTTATTAATTATGGACCAGATTTTCAATAAGGTTGGATCTTACTGGTTGGGTCAAAAGGCTAACAAAGAGTTCAATTCCGTCGGCGATGACATTAATTCACTAGGAAGCAGCATTGGGGACAGCACCAAATGGTTGGTCAACAAATTTAAAGGGAAGATGCAGAAGCCCTTACCAGAGTTGCTAAAGGAATATGATTTGGCCGAGGGAATCTTCCCAAGGGATGCCACACACTACGAGTTTGATGAGAGGACGGGAAAACTTACAGTATATGTACCTCAAATATGTGAAGTGGGCTACAAGGATTCATCAGTGTTGCGATTTTTTACCACTGTAACTGGGTACCTTGAAAAGGGAAAGCTGGCTGATATAGAGGGGTTAAAGACAAAAGTAATGATCTGGGTCAAAGTTACTGCCATTACTTCTGAAGGTTCGAAGCTTTATTTTTCAGCTGGGGTGAAGAAAACCCGAAGCAGGGAGGCGTATCAGGTTCTTCGGGATGGAGTTGTTATAGAAAAGTTCTGACCTCATCTTAAACTATACGACATATGTTTGCTTGACAATGTATGTTTATCCTCGGTAATGTAATTGTGAATTTGCGAAATTTAACCTAAACTATAAGATCGATGTTTGTAACTGATACGTTACCTAATTAAGCTCAGGATATTATGATTTCATAAACGGGTATACAGTGCTTTTTCCGTCATGACATGTTCACCA ATGGACCAGATTTTCAATAAGGTTGGATCTTACTGGTTGGGTCAAAAGGCTAACAAAGAGTTCAATTCCGTCGGCGATGACATTAATTCACTAGGAAGCAGCATTGGGGACAGCACCAAATGGTTGGTCAACAAATTTAAAGGGAAGATGCAGAAGCCCTTACCAGAGTTGCTAAAGGAATATGATTTGGCCGAGGGAATCTTCCCAAGGGATGCCACACACTACGAGTTTGATGAGAGGACGGGAAAACTTACAGTATATGTACCTCAAATATGTGAAGTGGGCTACAAGGATTCATCAGTGTTGCGATTTTTTACCACTGTAACTGGGTACCTTGAAAAGGGAAAGCTGGCTGATATAGAGGGGTTAAAGACAAAAGTAATGATCTGGGTCAAAGTTACTGCCATTACTTCTGAAGGTTCGAAGCTTTATTTTTCAGCTGGGGTGAAGAAAACCCGAAGCAGGGAGGCGTATCAGGTTCTTCGGGATGGAGTTGTTATAGAAAAGTTCTGA MDQIFNKVGSYWLGQKANKEFNSVGDDINSLGSSIGDSTKWLVNKFKGKMQKPLPELLKEYDLAEGIFPRDATHYEFDERTGKLTVYVPQICEVGYKDSSVLRFFTTVTGYLEKGKLADIEGLKTKVMIWVKVTAITSEGSKLYFSAGVKKTRSREAYQVLRDGVVIEKF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo07468.1 vs. NCBI nr
Match: gi|902158800|gb|KNA06260.1| (hypothetical protein SOVF_182790 [Spinacia oleracea]) HSP 1 Score: 345.1 bits (884), Expect = 6.900e-92 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
BLAST of Spo07468.1 vs. NCBI nr
Match: gi|40642817|emb|CAD59765.1| (cp protein [Celosia cristata]) HSP 1 Score: 324.7 bits (831), Expect = 9.600e-86 Identity = 156/170 (91.76%), Postives = 165/170 (97.06%), Query Frame = 1
BLAST of Spo07468.1 vs. NCBI nr
Match: gi|731331730|ref|XP_010676815.1| (PREDICTED: uncharacterized protein At5g01610-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 313.5 bits (802), Expect = 2.200e-82 Identity = 151/170 (88.82%), Postives = 161/170 (94.71%), Query Frame = 1
BLAST of Spo07468.1 vs. NCBI nr
Match: gi|1000951108|ref|XP_002526673.2| (PREDICTED: uncharacterized protein At5g01610 [Ricinus communis]) HSP 1 Score: 294.3 bits (752), Expect = 1.400e-76 Identity = 141/170 (82.94%), Postives = 155/170 (91.18%), Query Frame = 1
BLAST of Spo07468.1 vs. NCBI nr
Match: gi|313586593|gb|ADR71307.1| (hypothetical protein 29 [Hevea brasiliensis]) HSP 1 Score: 293.5 bits (750), Expect = 2.400e-76 Identity = 137/170 (80.59%), Postives = 157/170 (92.35%), Query Frame = 1
BLAST of Spo07468.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QG92_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_182790 PE=4 SV=1) HSP 1 Score: 345.1 bits (884), Expect = 4.800e-92 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
BLAST of Spo07468.1 vs. UniProtKB/TrEMBL
Match: Q70VA9_9CARY (Cp protein OS=Celosia cristata GN=cp PE=2 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 6.700e-86 Identity = 156/170 (91.76%), Postives = 165/170 (97.06%), Query Frame = 1
BLAST of Spo07468.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEZ8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g103270 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 1.500e-82 Identity = 151/170 (88.82%), Postives = 161/170 (94.71%), Query Frame = 1
BLAST of Spo07468.1 vs. UniProtKB/TrEMBL
Match: I3NMS0_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 1.600e-76 Identity = 137/170 (80.59%), Postives = 157/170 (92.35%), Query Frame = 1
BLAST of Spo07468.1 vs. UniProtKB/TrEMBL
Match: A0A059A5T1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02959 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 1.500e-74 Identity = 135/170 (79.41%), Postives = 153/170 (90.00%), Query Frame = 1
BLAST of Spo07468.1 vs. ExPASy Swiss-Prot
Match: Y5161_ARATH (Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 7.900e-72 Identity = 127/170 (74.71%), Postives = 153/170 (90.00%), Query Frame = 1
BLAST of Spo07468.1 vs. TAIR (Arabidopsis)
Match: AT5G37070.1 (Protein of unknown function, DUF538) HSP 1 Score: 278.5 bits (711), Expect = 2.800e-75 Identity = 130/170 (76.47%), Postives = 153/170 (90.00%), Query Frame = 1
BLAST of Spo07468.1 vs. TAIR (Arabidopsis)
Match: AT3G08890.1 (Protein of unknown function, DUF538) HSP 1 Score: 275.0 bits (702), Expect = 3.100e-74 Identity = 130/170 (76.47%), Postives = 155/170 (91.18%), Query Frame = 1
BLAST of Spo07468.1 vs. TAIR (Arabidopsis)
Match: AT5G01610.1 (Protein of unknown function, DUF538) HSP 1 Score: 271.2 bits (692), Expect = 4.400e-73 Identity = 127/170 (74.71%), Postives = 153/170 (90.00%), Query Frame = 1
BLAST of Spo07468.1 vs. TAIR (Arabidopsis)
Match: AT2G03350.1 (Protein of unknown function, DUF538) HSP 1 Score: 167.5 bits (423), Expect = 6.900e-42 Identity = 78/164 (47.56%), Postives = 113/164 (68.90%), Query Frame = 1
BLAST of Spo07468.1 vs. TAIR (Arabidopsis)
Match: AT1G02816.1 (Protein of unknown function, DUF538) HSP 1 Score: 66.2 bits (160), Expect = 2.200e-11 Identity = 28/94 (29.79%), Postives = 52/94 (55.32%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo07468.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo07468.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo07468.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1 Position : 0 Zoom : x 1
BLAST of Spo07468.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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