Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTAGGTCGATTATCACTACCATTAATTCGCATAAAATGAGCAAACTCAATAGAATTCAATCCAAAATCCAAAATAATATAAACTGAAGTTCAAAACCCTAACTAAATGAAGAATGAAGGAGATATGAAGGAGACAGATGAAAGCATTGTGAACAAAATTCTCACCTCCGACTAACCGTCCCGCCTCCTTCCTCCACCCTCGCCGCCGTCAATCTAGTTTCTCCAGAAACCTCCGCCGTCAAGCTTCTCTTTCCAAGGGTTTCGAAAACGATGGTTCGATTGCGACAGTAGCAAGGATGCGACGCCGGCGGCTTCAACGACGCTTCCACCTCCGACATCCTCCTCCACCTCTTCTATGACCCCGATTCTCCCTCTTCCATTGTCGAAATCTATGATTTATCATAAAGAATTGAAGAATAAAAAACTTAAACAAAATTGAAAATTCTAAAACCTAACAGAATTGAAGAAAGGAGGAAAGAGATGGAAGATTTACCTCATTTACAAACTTCGCCGCCGCCGCTCCTTACCGAATCAACCGCCTTCCAGCTTCAACGCCGCCGAATTCTTGTGCACGAACCTTGCCGGAGGAAAATTTGAGCGGCGAGGTTGAGGAGAGGGAGGGAGGCAGAGGCTTTGATTGGCGAGGTTGAGGAGAGAAGGGGAGGCGGATAGGATTTGAGGAGAGAGAAAGAAGCAGGGAGTTTAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGGGAGAGACAGAGTGTGAGGAGAGAGGTAGAATTAGAAATATTTATGCGATCCGAAAATTAAAACCCATGGATTTTTTGACCCGCGAACTGACCCGCAACAGACCCATAGGTGGGTGGTCTGACCGGTCAGGCGGTTGTTTTTAAAAGTTTGTAAAGCATCAATACAGAAATACAGATCTTCATCCATCAGAAATCAAACAGAAGGAAAGTGATGTGCATCACTGTATTCCTATGGCAAGCCCACCCACTCTACCCGTTTCTCTTACTCCTCAATCGTGACGAATTCCATTCTAGGTAAACCCTTTTCTCTCTCTCCCTCCTGAATTTCATACGAAGTATATTTTAGCATAATTATGAACTGGGTGTCTTTGAAAATTTGATTTTGTTTTTATCCCTCTTTCCTAAATTTGATGTTTCTGGTTAAAATTATGAAGTGGGTAAGTTAAAAGTTTGAATCTTTTACCTTCTTCCTCCAGAATTTGATGTTTATGAACAAAATTATGAAGTGGGTATGTTAAAAGTTTGAATTTTGTACCTTCTTTTTCCTTAATTTGATGTTTCTAATCAGAATTATGAACTGGGTATGTTAAAAGTTTGATTCTTTTATATAAAAAAAACATTATTTCTTTTAAATTTTATGTTATTGAGCATAATCATGAAGTGGGTATGCTAAAAAGGTTGGTACTTCTACCTTATTTCGTCTAAATTTGGTGTTTCTAATCAAATTAATGAAGTGGGTGTGTTAAAAGTTTGTTTCTTTAACCTTAATTTGATTATTTTTTTAATCAACATAATGAAGTGGATGTATCTGAAATTTTGATTTTTTTTGGAAGGCCAACAAAACCAGCAGGGTGGTGGGAAGGAGAAGACATAATTGGCGGAAGAGACGAGGTTGGTGGTGGGACATGGTTGGCTTGTTCCAAAAGTGGAAGGGTCGCATTTCTTACTAATTTTAGAGAGAGTGAATCTAATCCTGATGCCAAGAGTAGAGGTGACTTGCCTGTTCGTTTTCTTAAGGTAATCATGGATTTGATCTTTTTTAGCTTCTTCTACTTGCTTGTAGTAGTGACTTATCATTTGATTGCTTTAGAATCTTTTTCATGCTTTAAGGTGGACTTTGATTCTTATGGATTTGAACTTTTGTGGTTGATTTTATCTGTTTTTATGAAGAGAGCATGATTCTTAAGACAAGGTTTCGAGAGTAGGCTTGAAGCTATTGTGTGTAACTTGTAAGGCAAGGGAATACATGTTCATTGTAATGGTAGATATTAGAGTATGCAACATAAGGGAAAGCTAAACTCAGGACAATTGACTTGTAATTGTTGTATGATTGCTAATATCTTTTGGTAATGCAACTATGTGCACTTTTCTGCAAGTGTGCATCAATCGAGGCATTTGTTTTATACTTTTATGCACAAAACTTAGAAGATAATGCAATTGTGTGCACTTCTTTGCAAGTTTTTATCAATCGAGGCAGTTGTGTATTTCTGTGCACTCTTACTTGTCAATTTAAAACACCAGTTCAATGTTATTTCTCAGTTTTGAATACTAAAGGAATAACTTACAATTCCTTAATATGTTATATGTGTGCATAACCTTAAAAGCTATGTTACATGGACTCTTCGTTTTACCTCAAATACCCGTGTCTGATCCTCGACACTCGGATATGAGTATGGACACTTCGACACTCTATTTTGGACCAAAACCATGCCAAAATAGCCGTGTCTGACACTTAGACATGTACTCGTGTCTGATATGGGTATCCGAGTCCAGGAAACGTAGCTAAAAGTCACTTATGTATACATGAATTTGTTTTAAGTGGTTCAAACCTTGACAAGACATCCCTGGGTTTGAGATTTGCTGCTCATGACTTCAACGGCCTGCCAATTTTTATGCCAACATTTGTCTTTTGAAATCCTTTTTTTCCCTAGATAAATATGCATTTCTGGAAGATCCTTAGGGGTCTTGTGGCTCATGTTGTACATTTGAGGTCTTATTTTGGCTATTGGATTAAGGCGAGAATTATATGACTGGCGTGAGGGTCTAATATGAAATATATTCCGTCACACTAAGGAATACCCTGGTCATTTTATTCAATTATGTCTGTTGGCTGACTTCTGAGTTCTGAGGCTCCCAATTAGTCTTGTTTGAATCTGATTATGTTGTACAAAAGGATCAAAAATATTCATCAGAGCATGACCTTTTCGTTAAAGTTTGTATACTCCTTTATGCTCTCATGTTGTTCAAATCCTATTTCCATGTGTGATTAGATGAAGTTTTTTTTTTGAAATGTTCTGTATTTCAACATTTTCAAGTGAGTATATCGTGGATAGAATTACTCATGGTTATTAGTAATTTGTAAAGTCATTCTTAGTTTTTACTCCTTTCAAGATGAAGGACTAGCAGGGATTCTTACCATCGGTTAGTTACACATCAAGCTAATCAGCAGCTTATCCAGAGAATGATGTGACCCTCCCAATAATTTGGTGAAATTTTGTTCTCTAAAAAATTGAACAAAACACTATTCAAGGTCCAAGGACTTGTAGTCTGCATTTTATTGCAAATTGTTTATCAGGTTCTTTGACTAGTTTAATACTTGGTTTTGAGTTTGAACGCCTTCGAGTTTGCTTCTTAACAGAGTAAGAAAAATCCTTCTGAATTTGCCGATGAAGTTATCCAGGAGTTTGATCAGTATAATGGATTTAACTTGATAGTGGCAGATATCTGCTCCAAAACAATGGTATACTTGACCAACAGGCCAAAAGAAAATAAACCATCTGCCTTGCAAGTTTCACCCGGGATTCATGTTTTAACCAACAGCAGTCTAGATTCACCTTGGCCTAAAGTAAGTTTTTCTTCCTTTTTGTGCTTAATTAGCTTTTGGTTCTTTACCCTTGTTTGTTGTACAAATAGCAAACAATCTGTCTCCTGTAATTCATCTCATTTTTCTGTGACTTTGTTTTCCCTTCGGCCGGGTGTGCTCAGGCTCAAAGGCTTCACCATAATTTTAAGGAATTAATGGACACATACAATGAAGGTGAAGTACAAGTGCATGAAATGGTAGAAAAGCTGATGACGGACACAACAAAAGCAGACAAAAGCTCACTTCCAGGAATTCTCTCCCCTAATTTCGAGCATCAACTGAGTTCCATTTTCATTGACACTGATTCCCCACGAGTAAATCCCATTCTTTACTACTCCCTCCGTCTCAATTTATTCTTTACGCTTTCCGTTTCTAGTGTCCCATATTAATCTTTAAACTTATAATTTTTCCTTTTATATTGTAGCATAAAAGTCACTAATATTCTGTCAAAAATCGTGTCAAATGATTATTTTAACCAATCAAATTCATTGGGTCATTTTAACCATTAAATCTCTCACACTTTTCCATTGAAAAGTCAAATCTTTCTCATGTAATTTTTTTTTGATTAAAGTGAAAATAATATTAATAAACGTAACTTGCATTGTTTAAGTAAAAAAAAAAAAGAGAATTTATTAATTATTTGTCAAAACGCGTTGTAAATAATAAAAAGGGATGGAGGGACTAGTGTTTATTTATTCGTTTCTACTTAAATCCTTGTTAAAATGATGTTAAGATCTGTATTAATTTTGATAGGGAAGGTATGGCACCAGAAGCACTTCCGTTGTGCTTGTGAAGGTCGATGGAGAGGTCTGCTTCCATGAGCGATACCTCGAGGATAACTCCTGGAAGGAGCACGCGATAAAGTACCAGATAGAGTAAGATGAAATTTCACTCTTGGGAAGTTAGTTAGTTGAATCCCCTGCTGGTATGTCCTAAAACTAGTTTCTGTTATTGTAATCATAGAATGATAAATGAACTGTATAGCATTAGTTATGCGTTATAGTTGGCTAATCATCACCAAAGCAAACAAAAGAACTCTATAGTTTGCTAACAACCCAATAGTCCACGGTTCCATGCCTCGACTTGTATATAGTTTTATGGTAATTGTAATTTGGAAGAGTTTTCCTGCCATAGTAAAACATATTATATCTATCCTGTTACACAATTCACACATAACAACATTGTATACTTCTTGTAACATATATATAG GCTAGGTCGATTATCACTACCATTAATTCGCATAAAATGAGCAAACTCAATAGAATTCAATCCAAAATCCAAAATAATATAAACTGAAGTTCAAAACCCTAACTAAATGAAGAATGAAGGAGATATGAAGGAGACAGATGAAAGCATTGTGAACAAAATTCTCACCTCCGACTAACCGTCCCGCCTCCTTCCTCCACCCTCGCCGCCGTCAATCTAGTTTCTCCAGAAACCTCCGCCGTCAAGCTTCTCTTTCCAAGGGTTTCGAAAACGATGGTTCGATTGCGACAGTAGCAAGGATGCGACGCCGGCGGCTTCAACGACGCTTCCACCTCCGACATCCTCCTCCACCTCTTCTATGACCCCGATTCTCCCTCTTCCATTGTCGAAATCTATGATTTATCATAAAGAATTGAAGAATAAAAAACTTAAACAAAATTGAAAATTCTAAAACCTAACAGAATTGAAGAAAGGAGGAAAGAGATGGAAGATTTACCTCATTTACAAACTTCGCCGCCGCCGCTCCTTACCGAATCAACCGCCTTCCAGCTTCAACGCCGCCGAATTCTTGTGCACGAACCTTGCCGGAGGAAAATTTGAGCGGCGAGGTTGAGGAGAGGGAGGGAGGCAGAGGCTTTGATTGGCGAGGTTGAGGAGAGAAGGGGAGGCGGATAGGATTTGAGGAGAGAGAAAGAAGCAGGGAGTTTAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGGGAGAGACAGAGTGTGAGGAGAGAGGTAGAATTAGAAATATTTATGCGATCCGAAAATTAAAACCCATGGATTTTTTGACCCGCGAACTGACCCGCAACAGACCCATAGGTGGGTGGTCTGACCGGTCAGGCGGTTGTTTTTAAAAGTTTGTAAAGCATCAATACAGAAATACAGATCTTCATCCATCAGAAATCAAACAGAAGGAAAGTGATGTGCATCACTGTATTCCTATGGCAAGCCCACCCACTCTACCCGTTTCTCTTACTCCTCAATCGTGACGAATTCCATTCTAGGCCAACAAAACCAGCAGGGTGGTGGGAAGGAGAAGACATAATTGGCGGAAGAGACGAGGTTGGTGGTGGGACATGGTTGGCTTGTTCCAAAAGTGGAAGGGTCGCATTTCTTACTAATTTTAGAGAGAGTGAATCTAATCCTGATGCCAAGAGTAGAGGTGACTTGCCTGTTCGTTTTCTTAAGAGTAAGAAAAATCCTTCTGAATTTGCCGATGAAGTTATCCAGGAGTTTGATCAGTATAATGGATTTAACTTGATAGTGGCAGATATCTGCTCCAAAACAATGGTATACTTGACCAACAGGCCAAAAGAAAATAAACCATCTGCCTTGCAAGTTTCACCCGGGATTCATGTTTTAACCAACAGCAGTCTAGATTCACCTTGGCCTAAAGCTCAAAGGCTTCACCATAATTTTAAGGAATTAATGGACACATACAATGAAGGTGAAGTACAAGTGCATGAAATGGTAGAAAAGCTGATGACGGACACAACAAAAGCAGACAAAAGCTCACTTCCAGGAATTCTCTCCCCTAATTTCGAGCATCAACTGAGTTCCATTTTCATTGACACTGATTCCCCACGAGGAAGGTATGGCACCAGAAGCACTTCCGTTGTGCTTGTGAAGGTCGATGGAGAGGTCTGCTTCCATGAGCGATACCTCGAGGATAACTCCTGGAAGGAGCACGCGATAAAGTACCAGATAGAGTAAGATGAAATTTCACTCTTGGGAAGTTAGTTAGTTGAATCCCCTGCTGGTATGTCCTAAAACTAGTTTCTGTTATTGTAATCATAGAATGATAAATGAACTGTATAGCATTAGTTATGCGTTATAGTTGGCTAATCATCACCAAAGCAAACAAAAGAACTCTATAGTTTGCTAACAACCCAATAGTCCACGGTTCCATGCCTCGACTTGTATATAGTTTTATGGTAATTGTAATTTGGAAGAGTTTTCCTGCCATAGTAAAACATATTATATCTATCCTGTTACACAATTCACACATAACAACATTGTATACTTCTTGTAACATATATATAG ATGTGCATCACTGTATTCCTATGGCAAGCCCACCCACTCTACCCGTTTCTCTTACTCCTCAATCGTGACGAATTCCATTCTAGGCCAACAAAACCAGCAGGGTGGTGGGAAGGAGAAGACATAATTGGCGGAAGAGACGAGGTTGGTGGTGGGACATGGTTGGCTTGTTCCAAAAGTGGAAGGGTCGCATTTCTTACTAATTTTAGAGAGAGTGAATCTAATCCTGATGCCAAGAGTAGAGGTGACTTGCCTGTTCGTTTTCTTAAGAGTAAGAAAAATCCTTCTGAATTTGCCGATGAAGTTATCCAGGAGTTTGATCAGTATAATGGATTTAACTTGATAGTGGCAGATATCTGCTCCAAAACAATGGTATACTTGACCAACAGGCCAAAAGAAAATAAACCATCTGCCTTGCAAGTTTCACCCGGGATTCATGTTTTAACCAACAGCAGTCTAGATTCACCTTGGCCTAAAGCTCAAAGGCTTCACCATAATTTTAAGGAATTAATGGACACATACAATGAAGGTGAAGTACAAGTGCATGAAATGGTAGAAAAGCTGATGACGGACACAACAAAAGCAGACAAAAGCTCACTTCCAGGAATTCTCTCCCCTAATTTCGAGCATCAACTGAGTTCCATTTTCATTGACACTGATTCCCCACGAGGAAGGTATGGCACCAGAAGCACTTCCGTTGTGCTTGTGAAGGTCGATGGAGAGGTCTGCTTCCATGAGCGATACCTCGAGGATAACTCCTGGAAGGAGCACGCGATAAAGTACCAGATAGAGTAA MCITVFLWQAHPLYPFLLLLNRDEFHSRPTKPAGWWEGEDIIGGRDEVGGGTWLACSKSGRVAFLTNFRESESNPDAKSRGDLPVRFLKSKKNPSEFADEVIQEFDQYNGFNLIVADICSKTMVYLTNRPKENKPSALQVSPGIHVLTNSSLDSPWPKAQRLHHNFKELMDTYNEGEVQVHEMVEKLMTDTTKADKSSLPGILSPNFEHQLSSIFIDTDSPRGRYGTRSTSVVLVKVDGEVCFHERYLEDNSWKEHAIKYQIE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo07494.1 vs. NCBI nr
Match: gi|902184441|gb|KNA10294.1| (hypothetical protein SOVF_145770 [Spinacia oleracea]) HSP 1 Score: 550.1 bits (1416), Expect = 2.200e-153 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
BLAST of Spo07494.1 vs. NCBI nr
Match: gi|731358077|ref|XP_010690540.1| (PREDICTED: transport and Golgi organization protein 2 homolog [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 454.5 bits (1168), Expect = 1.200e-124 Identity = 212/263 (80.61%), Postives = 234/263 (88.97%), Query Frame = 1
BLAST of Spo07494.1 vs. NCBI nr
Match: gi|359474959|ref|XP_003631559.1| (PREDICTED: transport and Golgi organization 2 homolog [Vitis vinifera]) HSP 1 Score: 388.3 bits (996), Expect = 1.100e-104 Identity = 177/263 (67.30%), Postives = 218/263 (82.89%), Query Frame = 1
BLAST of Spo07494.1 vs. NCBI nr
Match: gi|743895075|ref|XP_011040802.1| (PREDICTED: transport and Golgi organization 2 homolog [Populus euphratica]) HSP 1 Score: 376.7 bits (966), Expect = 3.300e-101 Identity = 172/263 (65.40%), Postives = 211/263 (80.23%), Query Frame = 1
BLAST of Spo07494.1 vs. NCBI nr
Match: gi|568866502|ref|XP_006486594.1| (PREDICTED: transport and Golgi organization 2 homolog [Citrus sinensis]) HSP 1 Score: 376.7 bits (966), Expect = 3.300e-101 Identity = 177/263 (67.30%), Postives = 209/263 (79.47%), Query Frame = 1
BLAST of Spo07494.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSQ1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145770 PE=4 SV=1) HSP 1 Score: 550.1 bits (1416), Expect = 1.500e-153 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
BLAST of Spo07494.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EF13_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g215570 PE=4 SV=1) HSP 1 Score: 454.5 bits (1168), Expect = 8.600e-125 Identity = 212/263 (80.61%), Postives = 234/263 (88.97%), Query Frame = 1
BLAST of Spo07494.1 vs. UniProtKB/TrEMBL
Match: D7U4R9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g03840 PE=4 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 7.600e-105 Identity = 177/263 (67.30%), Postives = 218/263 (82.89%), Query Frame = 1
BLAST of Spo07494.1 vs. UniProtKB/TrEMBL
Match: U5GMY2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s21630g PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 5.100e-101 Identity = 172/263 (65.40%), Postives = 212/263 (80.61%), Query Frame = 1
BLAST of Spo07494.1 vs. UniProtKB/TrEMBL
Match: V4SA16_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029078mg PE=4 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 8.700e-101 Identity = 176/263 (66.92%), Postives = 209/263 (79.47%), Query Frame = 1
BLAST of Spo07494.1 vs. ExPASy Swiss-Prot
Match: TNG2_MOUSE (Transport and Golgi organization 2 homolog OS=Mus musculus GN=Tango2 PE=1 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 3.700e-28 Identity = 85/284 (29.93%), Postives = 142/284 (50.00%), Query Frame = 1
BLAST of Spo07494.1 vs. ExPASy Swiss-Prot
Match: TNG2_HUMAN (Transport and Golgi organization protein 2 homolog OS=Homo sapiens GN=TANGO2 PE=2 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.600e-26 Identity = 81/281 (28.83%), Postives = 139/281 (49.47%), Query Frame = 1
BLAST of Spo07494.1 vs. ExPASy Swiss-Prot
Match: TNG2_BOVIN (Transport and Golgi organization protein 2 homolog OS=Bos taurus GN=TANGO2 PE=2 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.300e-25 Identity = 85/279 (30.47%), Postives = 140/279 (50.18%), Query Frame = 1
BLAST of Spo07494.1 vs. ExPASy Swiss-Prot
Match: YG37_YEAST (Uncharacterized protein YGR127W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR127W PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.400e-11 Identity = 84/310 (27.10%), Postives = 129/310 (41.61%), Query Frame = 1
BLAST of Spo07494.1 vs. TAIR (Arabidopsis)
Match: AT4G38260.1 (Protein of unknown function (DUF833)) HSP 1 Score: 326.2 bits (835), Expect = 1.800e-89 Identity = 151/269 (56.13%), Postives = 199/269 (73.98%), Query Frame = 1
BLAST of Spo07494.1 vs. TAIR (Arabidopsis)
Match: AT1G20730.1 (Protein of unknown function (DUF833)) HSP 1 Score: 100.9 bits (250), Expect = 1.200e-21 Identity = 83/259 (32.05%), Postives = 126/259 (48.65%), Query Frame = 1
BLAST of Spo07494.1 vs. TAIR (Arabidopsis)
Match: AT1G20740.1 (Protein of unknown function (DUF833)) HSP 1 Score: 94.0 bits (232), Expect = 1.500e-19 Identity = 82/251 (32.67%), Postives = 125/251 (49.80%), Query Frame = 1
BLAST of Spo07494.1 vs. TAIR (Arabidopsis)
Match: AT1G20680.1 (Protein of unknown function (DUF833)) HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13 Identity = 68/246 (27.64%), Postives = 113/246 (45.93%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo07494.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo07494.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo07494.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo07494.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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