Spo07557 (gene)

Overview
NameSpo07557
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00529 : 345843 .. 347192 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCCCCTAATTCCTCCAACTATGACAAGTAAGTCTACGAAAGTGGATAAAACTTGAACAAATACTTGTCGAAGCAAAGTTTGATTTGTTATCATTAACCCACACATAATAACCGTGTTAACCCAAGATTCTTTAACCCACCTACGTAGCAGCCGTGTGTTTGCAATATTTCATAAATAAATAAAATACAAATGTGAATAAAATATTAAAAAAAACGCGCTCCAATAAATCAGCGCCTATTTGGAACCTTCCTTTTGAAAATTCTTTCTTACCTTTTACCTTTATGCCTTGTTTGCCTATATATACAAGTAGGAATATTAGTCATATCCTACCATAATATTTACTACAAGAGTTTTAATTTATCAAGCCTTACAAAAAAAAACAACTACAACTACCCAATTAATTTGTGATCACCTACCAAACAGAGAATATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTATTCATTTTCCCGATCCTATGTTTTAATTTTGTGTGGTTATTAATTGTGAGTTTGAGTTAATTTTGGAGTTGTGATGGTTGTATAGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGGTTTCATTGAAGGATGGTACGTTACATATATACCTTTCTCTGTTGTTCTTTATTCTTTCGATAAACCAAATTATAATAAGTTATTCATTTTGTTTGTTAATTGGTTTGTTGTATGTTGTCTAAAATTGCAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGATGATTTTTCTACCATCTTCTTAATATATTTTGTGGAGTGAATTTTTCAATTTATGTGTATTTAATTTATCATTTTATGAACATACAGGTCATGCTATTTATATATTTTTAAATATATATATATTGTCATGTGAATAATAAAAATAATATCCAGTGTTAGTTGTGTTATTTGATCTTGGTGTGGTCTAATGATTGTTCATTTTCTTGTATGGATTGCTGCGCGCAGCCTTGCAGCTTTATGCTGCTGTTGGCTTTTTGAAGAATGTTGTTAAAGTCTTCTCCAAAACATCAAATAAACCACCAAACTTTAAAATTCGATAAAAAAAAACAGGCGGTTTAGTACATCTAACATTAGATGTATCTGATAACAAGACATATGTACTTTTCGCAATCTTAATTAGTTTACGAGCTTGTAACATAGCTATGTGATTTTATCTTTGTCTCTTAGTAAAAGTTTGTTTTTTATTATGAGAAAA

mRNA sequence

CCACCCCCTAATTCCTCCAACTATGACAAGTAAGTCTACGAAAGTGGATAAAACTTGAACAAATACTTGTCGAAGCAAAGTTTGATTTGTTATCATTAACCCACACATAATAACCGTGTTAACCCAAGATTCTTTAACCCACCTACGTAGCAGCCGTGTGTTTGCAATATTTCATAAATAAATAAAATACAAATGTGAATAAAATATTAAAAAAAACGCGCTCCAATAAATCAGCGCCTATTTGGAACCTTCCTTTTGAAAATTCTTTCTTACCTTTTACCTTTATGCCTTGTTTGCCTATATATACAAGTAGGAATATTAGTCATATCCTACCATAATATTTACTACAAGAGTTTTAATTTATCAAGCCTTACAAAAAAAAACAACTACAACTACCCAATTAATTTGTGATCACCTACCAAACAGAGAATATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGATGATTTTTCTACCATCTTCTTAATATATTTTGTGGAGTGAATTTTTCAATTTATGTGTATTTAATTTATCATTTTATGAACATACAGGTCATGCTATTTATATATTTTTAAATATATATATATTGTCATGTGAATAATAAAAATAATATCCAGTGTTAGTTGTGTTATTTGATCTTGGTGTGGTCTAATGATTGTTCATTTTCTTGTATGGATTGCTGCGCGCAGCCTTGCAGCTTTATGCTGCTGTTGGCTTTTTGAAGAATGTTGTTAAAGTCTTCTCCAAAACATCAAATAAACCACCAAACTTTAAAATTCGATAAAAAAAAACAGGCGGTTTAGTACATCTAACATTAGATGTATCTGATAACAAGACATATGTACTTTTCGCAATCTTAATTAGTTTACGAGCTTGTAACATAGCTATGTGATTTTATCTTTGTCTCTTAGTAAAAGTTTGTTTTTTATTATGAGAAAA

Coding sequence (CDS)

ATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGA

Protein sequence

MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEKVWRGYVAVGSVKSAAAKRFMDS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07557.1Spo07557.1mRNA


Homology
[Close]
BLAST of Spo07557.1 vs. NCBI nr
Match: gi|902211801|gb|KNA16814.1| (hypothetical protein SOVF_085780 [Spinacia oleracea])

HSP 1 Score: 101.3 bits (251), Expect = 7.500e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

		  

Query: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK
Sbjct: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 52
[Close]
BLAST of Spo07557.1 vs. NCBI nr
Match: gi|870863994|gb|KMT15127.1| (hypothetical protein BVRB_3g062450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 

		  

Query: 9  QKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          + QQQQQQQQNMDN+PP GYPTLN+PEGKMKKK WF TKKRGEK
Sbjct: 5  ENQQQQQQQQNMDNVPPPGYPTLNSPEGKMKKKSWFRTKKRGEK 48
[Close]
BLAST of Spo07557.1 vs. NCBI nr
Match: gi|870863995|gb|KMT15128.1| (hypothetical protein BVRB_3g062460 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 71.6 bits (174), Expect = 6.400e-10
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 

		  

Query: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          MSK+ETQ      QQQQ NMDN+PP GYPTLN+PEGK+KKKGWF TK RG+K
Sbjct: 1  MSKTETQ------QQQQLNMDNVPPPGYPTLNSPEGKIKKKGWFRTKTRGDK 46
[Close]
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCU0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085780 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.200e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

		  

Query: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK
Sbjct: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 52
[Close]
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNM8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062450 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.100e-12
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 

		  

Query: 9  QKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          + QQQQQQQQNMDN+PP GYPTLN+PEGKMKKK WF TKKRGEK
Sbjct: 5  ENQQQQQQQQNMDNVPPPGYPTLNSPEGKMKKKSWFRTKKRGEK 48
[Close]
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT63_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062460 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.400e-10
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 

		  

Query: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          MSK+ETQ      QQQQ NMDN+PP GYPTLN+PEGK+KKKGWF TK RG+K
Sbjct: 1  MSKTETQ------QQQQLNMDNVPPPGYPTLNSPEGKIKKKGWFRTKTRGDK 46
The following BLAST results are available for this feature:
BLAST of Spo07557.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902211801|gb|KNA16814.1|7.5e-19100.hypothetical protein SOVF_0857... [more]
gi|870863994|gb|KMT15127.1|1.2e-1184.0hypothetical protein BVRB_3g06... [more]
gi|870863995|gb|KMT15128.1|6.4e-1071.1hypothetical protein BVRB_3g06... [more]
back to top
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RCU0_SPIOL5.2e-19100.Uncharacterized protein OS=Spi... [more]
A0A0J8CNM8_BETVU8.1e-1284.0Uncharacterized protein OS=Bet... [more]
A0A0J8CT63_BETVU4.4e-1071.1Uncharacterized protein OS=Bet... [more]
back to top
BLAST of Spo07557.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo07557.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009651 response to salt stress
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0048767 root hair elongation
biological_process GO:0009555 pollen development
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006468 protein phosphorylation
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006508 proteolysis
biological_process GO:0006816 calcium ion transport
biological_process GO:0007030 Golgi organization
biological_process GO:0007031 peroxisome organization
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006635 fatty acid beta-oxidation
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005778 peroxisomal membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0030247 polysaccharide binding
molecular_function GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003935 GTP cyclohydrolase II activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo108640.79Barchart | Table
Spo090090.78Barchart | Table
Spo154990.78Barchart | Table
Spo229980.77Barchart | Table
Spo189970.77Barchart | Table
Spo176120.73Barchart | Table
Spo072360.73Barchart | Table
Spo095770.72Barchart | Table
Spo006670.72Barchart | Table
Spo156430.72Barchart | Table
Spo137830.72Barchart | Table
Spo135830.72Barchart | Table
Spo089350.71Barchart | Table
Spo187780.71Barchart | Table
Spo145370.71Barchart | Table
Spo146670.71Barchart | Table
Spo094340.70Barchart | Table
Spo191230.70Barchart | Table
Spo256330.70Barchart | Table
Spo168010.70Barchart | Table
Spo224510.70Barchart | Table
Spo282650.70Barchart | Table
Spo232570.70Barchart | Table
Spo131710.69Barchart | Table
Spo057790.69Barchart | Table
Spo108350.69Barchart | Table
Spo119600.69Barchart | Table
Spo146300.69Barchart | Table
Spo242690.68Barchart | Table
Spo184750.68Barchart | Table
Spo015140.68Barchart | Table
Spo218330.68Barchart | Table
Spo003980.68Barchart | Table
Spo254830.68Barchart | Table
Spo241330.68Barchart | Table
Spo094990.67Barchart | Table
Spo002050.67Barchart | Table
Spo104440.67Barchart | Table
Spo229200.67Barchart | Table
Spo264240.67Barchart | Table
Spo007220.67Barchart | Table
Spo085210.67Barchart | Table
Spo007480.67Barchart | Table
Spo016860.66Barchart | Table
Spo121450.66Barchart | Table
Spo128850.66Barchart | Table
Spo129620.66Barchart | Table
Spo133930.66Barchart | Table
Spo051250.66Barchart | Table
Spo035720.66Barchart | Table
Spo179400.66Barchart | Table
Spo012910.66Barchart | Table
Spo012560.66Barchart | Table
Spo009430.66Barchart | Table
Spo234190.66Barchart | Table
Spo233820.65Barchart | Table
Spo117510.65Barchart | Table
Spo018760.65Barchart | Table
Spo173370.65Barchart | Table
Spo248080.65Barchart | Table
Spo057280.65Barchart | Table
Spo066550.65Barchart | Table
Spo086450.65Barchart | Table
Spo199590.65Barchart | Table