Spo07711 (gene) | SpinachBase

Overview


Name	Spo07711
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Histone H4
Location	chr6 : 27996117 .. 27996428 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAAGAGGAAAGGGAGGAAAGGGGTTGGGAAAGGGAGGAGCCAAGAGGCACAGGAAGGTGCTCAGGGACAATATCCAGGGCATTACTAAGCCTGCCATTCGTCGTCTTGCTCGTCGAGGTGGTGTTAAGAGGATCAGCGGCCTGATATACGAGGAGACTCGCGGTGTTCTCAAGATCTTTTTGGAGAATGTTATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACAGTCACTGCCATGGATGTTGTCTATGCTCTCAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGCGGTTAG

mRNA sequence

ATGTCAGGAAGAGGAAAGGGAGGAAAGGGGTTGGGAAAGGGAGGAGCCAAGAGGCACAGGAAGGTGCTCAGGGACAATATCCAGGGCATTACTAAGCCTGCCATTCGTCGTCTTGCTCGTCGAGGTGGTGTTAAGAGGATCAGCGGCCTGATATACGAGGAGACTCGCGGTGTTCTCAAGATCTTTTTGGAGAATGTTATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACAGTCACTGCCATGGATGTTGTCTATGCTCTCAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGCGGTTAG

Coding sequence (CDS)

ATGTCAGGAAGAGGAAAGGGAGGAAAGGGGTTGGGAAAGGGAGGAGCCAAGAGGCACAGGAAGGTGCTCAGGGACAATATCCAGGGCATTACTAAGCCTGCCATTCGTCGTCTTGCTCGTCGAGGTGGTGTTAAGAGGATCAGCGGCCTGATATACGAGGAGACTCGCGGTGTTCTCAAGATCTTTTTGGAGAATGTTATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACAGTCACTGCCATGGATGTTGTCTATGCTCTCAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGCGGTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo07711.1	Spo07711.1	mRNA

Homology

[Close]

BLAST of Spo07711.1 vs. NCBI nr
Match: gi|976922550|gb|KVI06931.1| (Histone core [Cynara cardunculus var. scolymus])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 107 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 166

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 167 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 209

[Close]

BLAST of Spo07711.1 vs. NCBI nr
Match: gi|641854208|gb|KDO73016.1| (hypothetical protein CISIN_1g047769mg, partial [Citrus sinensis])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 29  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 88

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 89  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131

[Close]

BLAST of Spo07711.1 vs. NCBI nr
Match: gi|15226944|ref|NP_180441.1| (histone H4 [Arabidopsis thaliana])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. NCBI nr
Match: gi|960491942|ref|XP_014751185.1| (PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. NCBI nr
Match: gi|670426610|ref|XP_008653962.1| (PREDICTED: uncharacterized protein LOC103634138 [Zea mays])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. UniProtKB/TrEMBL
Match: A2WWR4_ORYSI (Histone H4 OS=Oryza sativa subsp. indica GN=OsI_04340 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. UniProtKB/TrEMBL
Match: A9NJR8_PICSI (Histone H4 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. UniProtKB/TrEMBL
Match: A9PA83_POPTR (Histone H4 OS=Populus trichocarpa GN=POPTR_0005s11740g PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. UniProtKB/TrEMBL
Match: H9MAC8_PINRA (Histone H4 OS=Pinus radiata GN=0_18315_01 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. UniProtKB/TrEMBL
Match: B9MST3_SOYBN (Histone H4 OS=Glycine max GN=GLYMA_02G224100 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. TAIR (Arabidopsis)
Match: AT1G07660.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. TAIR (Arabidopsis)
Match: AT1G07820.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. TAIR (Arabidopsis)
Match: AT2G28740.1 (histone H4)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. TAIR (Arabidopsis)
Match: AT3G45930.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo07711.1 vs. TAIR (Arabidopsis)
Match: AT3G53730.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of Spo07711.1 vs. NCBI nr
BLAST of Spo07711.1 vs. UniProtKB/TrEMBL
BLAST of Spo07711.1 vs. ExPASy Swiss-Prot
BLAST of Spo07711.1 vs. TAIR (Arabidopsis)

BLAST of Spo07711.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|976922550\|gb\|KVI06931.1\|	2.8e-48	100.	Histone core [Cynara carduncul...	[more]
gi\|641854208\|gb\|KDO73016.1\|	2.8e-48	100.	hypothetical protein CISIN_1g0...	[more]
gi\|15226944\|ref\|NP_180441.1\|	2.8e-48	100.	histone H4 [Arabidopsis thalia...	[more]
gi\|960491942\|ref\|XP_014751185.1\|	2.8e-48	100.	PREDICTED: uncharacterized pro...	[more]
gi\|670426610\|ref\|XP_008653962.1\|	2.8e-48	100.	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo07711.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A2WWR4_ORYSI	2.0e-48	100.	Histone H4 OS=Oryza sativa sub...	[more]
A9NJR8_PICSI	2.0e-48	100.	Histone H4 OS=Picea sitchensis...	[more]
A9PA83_POPTR	2.0e-48	100.	Histone H4 OS=Populus trichoca...	[more]
H9MAC8_PINRA	2.0e-48	100.	Histone H4 OS=Pinus radiata GN...	[more]
B9MST3_SOYBN	2.0e-48	100.	Histone H4 OS=Glycine max GN=G...	[more]

BLAST of Spo07711.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
H4_EUCGL	1.8e-50	100.	Histone H4 OS=Eucalyptus globu...	[more]
H4_CHEMJ	1.8e-50	100.	Histone H4 OS=Chelidonium maju...	[more]
H4_ARATH	1.8e-50	100.	Histone H4 OS=Arabidopsis thal...	[more]
H41_WHEAT	1.8e-50	100.	Histone H4 variant TH011 OS=Tr...	[more]
H4_PEA	1.8e-50	100.	Histone H4 OS=Pisum sativum PE...	[more]

BLAST of Spo07711.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT1G07660.1	9.9e-52	100.	Histone superfamily protein	[more]
AT1G07820.1	9.9e-52	100.	Histone superfamily protein	[more]
AT2G28740.1	9.9e-52	100.	histone H4	[more]
AT3G45930.1	9.9e-52	100.	Histone superfamily protein	[more]
AT3G53730.1	9.9e-52	100.	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 89..100 score: 2.2E-63coord: 5..16 score: 2.2E-63coord: 77..89 score: 2.2E-63coord: 20..39 score: 2.2E-63coord: 40..60 score: 2.2E-63coord: 62..76 score: 2.2
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 score: 2.0
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 2..103 score: 1.8
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 3..102 score: 4.04
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19 scor
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..103 score: 1.1E
None	No IPR available	PFAM	PF15511	CENP-T_C	coord: 35..96 score: 1.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0008283	cell proliferation
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0030036	actin cytoskeleton organization
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0003677	DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo28289	0.78	Barchart \| Table
Spo06331	0.71	Barchart \| Table
Spo28152	0.68	Barchart \| Table
Spo05970	0.67	Barchart \| Table
Spo10327	0.65	Barchart \| Table