Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCTCTTCTCTCTTCTCTCTTCTCTCTTTCTCTTTCTCTTTCTCTTTCTATGTTTCTCTCTCCTAAAGTTGTACAGTCATAACTGACATCACACCTGACCCTCCCTATAAATAACCCCACCTCATCTCCTCTTAAAACCTCATTTCCTTTAACCCATTTTCATTTACCAAAAAACCCATTAAAAGAGAAGTAAAACAAAAGAAAAGAAAAACCTTTGCCGTATTTCAGAGTTATATTAATTAAAAATAAAATAAAATCAATTAAGGTGGAGAAATAATCATGTGTGGTGGTGCTGTAATCTCCGACTACTATATACCCACGGGCAGATCTCATCGTCTGACCGCTGATTATTTATGGCCTGATCTCAAAGGTGCTGCTGTTGCTGCTGCTAAGAAGGGTACCACCGGCTATTCTAAGCCGTTGAGATCTGGGATTGCTAATGTTGATGATGATGATGCTGTTGCTGATCAAGCTTTTGAGGCTGATTTTCTGGAGTTTAAAGATGAATCTGATGATGAAGTTTCTGTTCTTCCCGAGTTTAAACCCTTTTCTTTTGCCCTTCCTAAACCCAAATCTCCTACTGGTATGTTGATTTCTTCATTTTTTTATTTGGTTTTTTTGACTTTTAATTTGATGTCGAGCTTAGAAATTATAAATTAAACTAGTTAATTTGATAAATTTGGGGTTTTGAAATAGTGATTTTAGTCTATTTCATGTTAGGTGAGGTTGGTAGGAGATGAATTTAATTAAATTAATTTTTTTTATTTCTTAGAATTTGCAAATTGTATACTCCGTAATTGATTGATTGTAATTTGTTGGGTTTTAGGTGGGTTGTTGTGTTTAATTATTTGGGTTTAATTTTACAACTTGTAATTGCTTGATTGGCTGCTTGAAGTTTGATTACTTCACATTTGATTAGGTTTAACATTTCCCTTCTTTAAGAACATTTTGTGGGGTTTTGTATAATTAATTCATGACTATTTTCATGATTTTTTCTGTTTTTGCTTTTAAAGTCGGAATCTTTGTTGATATGGGGTCAATTTGACTGAGAATTTGATTGATTGATGATGCGAAATTGTGGATTGCTTAGATTTTCTTTGTCTGTTTTGGAGGAGTGTTTTCTAGAAAAAAAAAATACTTACCATTAATGTTGTGTATCAAAATTGGGAAGATGAACTTTATTAAACAAGTGCACATAATAGTAGATACTTCGTACGAGATACTCATGGATGACCACGGGAGATAAGTTCTTGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGGTGGACTGGTGGTGGCTGTGTCAGGGTTTTTAAGTTCGTCCTTTTATTTTCTCTGTTTTGCGAGAGGGTTAATGGGTTTGAAATGATCAACTTCATGAAAGTAGAAAACTATCATACTTTGATATCGAAATATCACAGTTGATAGCTTGTTGATATATTGATACCTACAATATTATGTATGATTCTTCGATATGCCAGAATACTTGTTGATGAATGTAATCCTTCTGATGTTTTGAATAAATCTTGATTTGATCTATATGCTTTTTGAATAAATCTTGATTTGATCTATATGCTATCAGATGTGTTTTTTGATTAATTTGTCATTTTTTTTTGGTGTTTTGAAGGGTTGAAGCCCGTGGAGTTCGAAAGCCAGGCTGAAAAGTCGGCCAAGAGAAAGAGAAAGAACCAGTATCGTGGTATTCGACAACGCCCATGGGGCAAGTGGGCTGCTGAGATCCGTGACCCAAGGAAGGGCGTTCGAGTTTGGCTCGGAACATTCAACACCGCTGAAGAAGCTGCTAGAGCGTATGATGCTGAGGCACGCAGGATCCGTGGTGACAAAGCCAAGGTCAATTTCCCTGAGGAATCCCCCGCACCTTCTGCTACTCCTAGGCGTGCAGTTAAAGTCCGCTCTCAGAAACCTGCAACCTCACAGAACATAAACCAGAACTTCAATGTCATGAACAATCCCCAGAATGAGTACTACAAAAGTTTTGCTGTTGTTGAAGAGAAGCCCCAAGTTAAGCAGTTTCAGTATTCTGACCCAATGCCTGTTGTAGGAGAGGTAGCAGCATTCCAACCCTTCACTACTACCCCTTCTGAGGGAGCTGATCTGTATTTCAATTCAGAAGAAGGTAGTAACTCCTTTGATTGTTCCGACTTTGCTTGGGGAGAGAACGGCCCCAAAACTCCAGAAATATCCTCATTCTTCTCCTCTGCACTCTCGAGCGATGATGATGGAAATGCAACGAAGAAGATGAAGGTAACACCGGGAGATGCTTTACCCGTTGAAGAACACAGCGGAAAGAGCCTATCTGAGGAGCTCTCCGATGCTGATTTTGAGTCACAGTTGAATTTCTTGGATACGCCATATCTTGATGAGAATTGGGCAATTGATGCCTTCCTCGGAGGTGATGCATCGAATGAGGGTGTTAATCCGATGGATCTATGGAGCTTCGATGACTTCCCCGGGGGAGTATTCTAAGCATGCCATGCCTTCTTTATGTAAATAAGACATGTTAGTTACTGGTTCTTTGGTCAACAGTTTTTGTATTGCAAATCATTTACTCCCTAGAAAAAAAAACTATGGATTTCGGGTACAATGGGTTTAACCCAGAAGTGGTGATTTGAATCTGTTTGTTGTTCAATTTTTCAGGAGTGTCTGTTCGTGAGGTGAGAATACCGGTAGTGGTGTTACTGGGCAGATGCAGTTATATGAGAGTACATAGGTAACTTTAGGTTCCTTCTTGCATTTGGAAACTCTTTAAAGCTTAAGAATATGTACTGGTTGTTGTTGTTGTTGTTGTATTTATCCTTCCTTGATGAAAGCTGAACCTCTGTGCTTTCAACATTATGGTTTGTTGATTTATTCGAATGTGTCTGCCATTGGAATAAGCAGTGTAAGCTTAATGAATGCTTATGTAATTTGGTAGGCTAACCCGACATTTTGTCACTCCCGGATTTGACTGGTATCTTCTTTTCCCCATGAGACGATGGAACAGAGAGCTTTCTCTCCTTTTCCGCCCAACCGATTGGTCTTGAGAATACTGGTTTTAAGAACGAGTGATTGCCCTTCTTCGACGCTCACTGTCCAACCTGGGAGCGGACACCCATTTATGGATGCACACTTTTACCTTAAATGCTTCAAAACTTCATGAATTGTCATACACTCATACGGATGGATTTGTCTAGGGAGAATCGAAGAAAAATTAAAGGAAGCTTTGTATACGGAGTTGTATTTTGTACTCCGTAAGTCATTGCGTCTACTCCATACGTCCTAAGTTGTCAACACGTACAAATAATGCATTTCGCAGTTTAGATAATTGAAGGTACACGTTAGTTCCTGGAAAATTGCCGGGTTAAATTAGCACAACTCTCTCAAACTTTGAACCTGCAAGTTGCACAAAAAAATTAAAATGTACTTGTCCTCCTGGCTCCTGTTATACTCACTCCATTTTAAAATAAT CCCTCTTCTCTCTTCTCTCTTCTCTCTTTCTCTTTCTCTTTCTCTTTCTATGTTTCTCTCTCCTAAAGTTGTACAGTCATAACTGACATCACACCTGACCCTCCCTATAAATAACCCCACCTCATCTCCTCTTAAAACCTCATTTCCTTTAACCCATTTTCATTTACCAAAAAACCCATTAAAAGAGAAGTAAAACAAAAGAAAAGAAAAACCTTTGCCGTATTTCAGAGTTATATTAATTAAAAATAAAATAAAATCAATTAAGGTGGAGAAATAATCATGTGTGGTGGTGCTGTAATCTCCGACTACTATATACCCACGGGCAGATCTCATCGTCTGACCGCTGATTATTTATGGCCTGATCTCAAAGGTGCTGCTGTTGCTGCTGCTAAGAAGGGTACCACCGGCTATTCTAAGCCGTTGAGATCTGGGATTGCTAATGTTGATGATGATGATGCTGTTGCTGATCAAGCTTTTGAGGCTGATTTTCTGGAGTTTAAAGATGAATCTGATGATGAAGTTTCTGTTCTTCCCGAGTTTAAACCCTTTTCTTTTGCCCTTCCTAAACCCAAATCTCCTACTGGGTTGAAGCCCGTGGAGTTCGAAAGCCAGGCTGAAAAGTCGGCCAAGAGAAAGAGAAAGAACCAGTATCGTGGTATTCGACAACGCCCATGGGGCAAGTGGGCTGCTGAGATCCGTGACCCAAGGAAGGGCGTTCGAGTTTGGCTCGGAACATTCAACACCGCTGAAGAAGCTGCTAGAGCGTATGATGCTGAGGCACGCAGGATCCGTGGTGACAAAGCCAAGGTCAATTTCCCTGAGGAATCCCCCGCACCTTCTGCTACTCCTAGGCGTGCAGTTAAAGTCCGCTCTCAGAAACCTGCAACCTCACAGAACATAAACCAGAACTTCAATGTCATGAACAATCCCCAGAATGAGTACTACAAAAGTTTTGCTGTTGTTGAAGAGAAGCCCCAAGTTAAGCAGTTTCAGTATTCTGACCCAATGCCTGTTGTAGGAGAGGTAGCAGCATTCCAACCCTTCACTACTACCCCTTCTGAGGGAGCTGATCTGTATTTCAATTCAGAAGAAGGTAGTAACTCCTTTGATTGTTCCGACTTTGCTTGGGGAGAGAACGGCCCCAAAACTCCAGAAATATCCTCATTCTTCTCCTCTGCACTCTCGAGCGATGATGATGGAAATGCAACGAAGAAGATGAAGGTAACACCGGGAGATGCTTTACCCGTTGAAGAACACAGCGGAAAGAGCCTATCTGAGGAGCTCTCCGATGCTGATTTTGAGTCACAGTTGAATTTCTTGGATACGCCATATCTTGATGAGAATTGGGCAATTGATGCCTTCCTCGGAGGTGATGCATCGAATGAGGGTGTTAATCCGATGGATCTATGGAGCTTCGATGACTTCCCCGGGGGAGTATTCTAAGCATGCCATGCCTTCTTTATGTAAATAAGACATGTTAGTTACTGGTTCTTTGGTCAACAGTTTTTGTATTGCAAATCATTTACTCCCTAGAAAAAAAAACTATGGATTTCGGGTACAATGGGTTTAACCCAGAAGTGGTGATTTGAATCTGTTTGTTGTTCAATTTTTCAGGAGTGTCTGTTCGTGAGGTGAGAATACCGGTAGTGGTGTTACTGGGCAGATGCAGTTATATGAGAGTACATAGGTAACTTTAGGTTCCTTCTTGCATTTGGAAACTCTTTAAAGCTTAAGAATATGTACTGGTTGTTGTTGTTGTTGTTGTATTTATCCTTCCTTGATGAAAGCTGAACCTCTGTGCTTTCAACATTATGGTTTGTTGATTTATTCGAATGTGTCTGCCATTGGAATAAGCAGTGTAAGCTTAATGAATGCTTATGTAATTTGGTAGGCTAACCCGACATTTTGTCACTCCCGGATTTGACTGGTATCTTCTTTTCCCCATGAGACGATGGAACAGAGAGCTTTCTCTCCTTTTCCGCCCAACCGATTGGTCTTGAGAATACTGGTTTTAAGAACGAGTGATTGCCCTTCTTCGACGCTCACTGTCCAACCTGGGAGCGGACACCCATTTATGGATGCACACTTTTACCTTAAATGCTTCAAAACTTCATGAATTGTCATACACTCATACGGATGGATTTGTCTAGGGAGAATCGAAGAAAAATTAAAGGAAGCTTTGTATACGGAGTTGTATTTTGTACTCCGTAAGTCATTGCGTCTACTCCATACGTCCTAAGTTGTCAACACGTACAAATAATGCATTTCGCAGTTTAGATAATTGAAGGTACACGTTAGTTCCTGGAAAATTGCCGGGTTAAATTAGCACAACTCTCTCAAACTTTGAACCTGCAAGTTGCACAAAAAAATTAAAATGTACTTGTCCTCCTGGCTCCTGTTATACTCACTCCATTTTAAAATAAT ATGTGTGGTGGTGCTGTAATCTCCGACTACTATATACCCACGGGCAGATCTCATCGTCTGACCGCTGATTATTTATGGCCTGATCTCAAAGGTGCTGCTGTTGCTGCTGCTAAGAAGGGTACCACCGGCTATTCTAAGCCGTTGAGATCTGGGATTGCTAATGTTGATGATGATGATGCTGTTGCTGATCAAGCTTTTGAGGCTGATTTTCTGGAGTTTAAAGATGAATCTGATGATGAAGTTTCTGTTCTTCCCGAGTTTAAACCCTTTTCTTTTGCCCTTCCTAAACCCAAATCTCCTACTGGGTTGAAGCCCGTGGAGTTCGAAAGCCAGGCTGAAAAGTCGGCCAAGAGAAAGAGAAAGAACCAGTATCGTGGTATTCGACAACGCCCATGGGGCAAGTGGGCTGCTGAGATCCGTGACCCAAGGAAGGGCGTTCGAGTTTGGCTCGGAACATTCAACACCGCTGAAGAAGCTGCTAGAGCGTATGATGCTGAGGCACGCAGGATCCGTGGTGACAAAGCCAAGGTCAATTTCCCTGAGGAATCCCCCGCACCTTCTGCTACTCCTAGGCGTGCAGTTAAAGTCCGCTCTCAGAAACCTGCAACCTCACAGAACATAAACCAGAACTTCAATGTCATGAACAATCCCCAGAATGAGTACTACAAAAGTTTTGCTGTTGTTGAAGAGAAGCCCCAAGTTAAGCAGTTTCAGTATTCTGACCCAATGCCTGTTGTAGGAGAGGTAGCAGCATTCCAACCCTTCACTACTACCCCTTCTGAGGGAGCTGATCTGTATTTCAATTCAGAAGAAGGTAGTAACTCCTTTGATTGTTCCGACTTTGCTTGGGGAGAGAACGGCCCCAAAACTCCAGAAATATCCTCATTCTTCTCCTCTGCACTCTCGAGCGATGATGATGGAAATGCAACGAAGAAGATGAAGGTAACACCGGGAGATGCTTTACCCGTTGAAGAACACAGCGGAAAGAGCCTATCTGAGGAGCTCTCCGATGCTGATTTTGAGTCACAGTTGAATTTCTTGGATACGCCATATCTTGATGAGAATTGGGCAATTGATGCCTTCCTCGGAGGTGATGCATCGAATGAGGGTGTTAATCCGATGGATCTATGGAGCTTCGATGACTTCCCCGGGGGAGTATTCTAA MCGGAVISDYYIPTGRSHRLTADYLWPDLKGAAVAAAKKGTTGYSKPLRSGIANVDDDDAVADQAFEADFLEFKDESDDEVSVLPEFKPFSFALPKPKSPTGLKPVEFESQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGDKAKVNFPEESPAPSATPRRAVKVRSQKPATSQNINQNFNVMNNPQNEYYKSFAVVEEKPQVKQFQYSDPMPVVGEVAAFQPFTTTPSEGADLYFNSEEGSNSFDCSDFAWGENGPKTPEISSFFSSALSSDDDGNATKKMKVTPGDALPVEEHSGKSLSEELSDADFESQLNFLDTPYLDENWAIDAFLGGDASNEGVNPMDLWSFDDFPGGVF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo07772.1 vs. NCBI nr
Match: gi|902232511|gb|KNA22653.1| (hypothetical protein SOVF_031310 [Spinacia oleracea]) HSP 1 Score: 773.5 bits (1996), Expect = 1.800e-220 Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 1
BLAST of Spo07772.1 vs. NCBI nr
Match: gi|365192896|gb|AEW68339.1| (dehydration-responsive element binding protein [Atriplex canescens]) HSP 1 Score: 576.6 bits (1485), Expect = 3.200e-161 Identity = 300/395 (75.95%), Postives = 327/395 (82.78%), Query Frame = 1
BLAST of Spo07772.1 vs. NCBI nr
Match: gi|209573241|gb|ACI62768.1| (dehydration-responsive element binding protein [Krascheninnikovia arborescens]) HSP 1 Score: 556.6 bits (1433), Expect = 3.400e-155 Identity = 300/395 (75.95%), Postives = 324/395 (82.03%), Query Frame = 1
BLAST of Spo07772.1 vs. NCBI nr
Match: gi|731347925|ref|XP_010685231.1| (PREDICTED: ethylene-responsive transcription factor RAP2-2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 535.8 bits (1379), Expect = 6.200e-149 Identity = 289/394 (73.35%), Postives = 321/394 (81.47%), Query Frame = 1
BLAST of Spo07772.1 vs. NCBI nr
Match: gi|657977647|ref|XP_008380747.1| (PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Malus domestica]) HSP 1 Score: 401.7 bits (1031), Expect = 1.400e-108 Identity = 232/411 (56.45%), Postives = 277/411 (67.40%), Query Frame = 1
BLAST of Spo07772.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RT78_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_031310 PE=4 SV=1) HSP 1 Score: 773.5 bits (1996), Expect = 1.200e-220 Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 1
BLAST of Spo07772.1 vs. UniProtKB/TrEMBL
Match: G9JXL3_ATRCA (Dehydration-responsive element binding protein OS=Atriplex canescens PE=2 SV=1) HSP 1 Score: 576.6 bits (1485), Expect = 2.200e-161 Identity = 300/395 (75.95%), Postives = 327/395 (82.78%), Query Frame = 1
BLAST of Spo07772.1 vs. UniProtKB/TrEMBL
Match: B6UZ63_9CARY (Dehydration-responsive element binding protein OS=Krascheninnikovia arborescens GN=DREB PE=2 SV=1) HSP 1 Score: 556.6 bits (1433), Expect = 2.400e-155 Identity = 300/395 (75.95%), Postives = 324/395 (82.03%), Query Frame = 1
BLAST of Spo07772.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BXM1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g169290 PE=4 SV=1) HSP 1 Score: 535.8 bits (1379), Expect = 4.300e-149 Identity = 289/394 (73.35%), Postives = 321/394 (81.47%), Query Frame = 1
BLAST of Spo07772.1 vs. UniProtKB/TrEMBL
Match: D5L0Z5_MALDO (AP2 domain class transcription factor OS=Malus domestica GN=AP2D11 PE=2 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 8.300e-108 Identity = 229/411 (55.72%), Postives = 277/411 (67.40%), Query Frame = 1
BLAST of Spo07772.1 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2) HSP 1 Score: 247.3 bits (630), Expect = 2.800e-64 Identity = 178/415 (42.89%), Postives = 229/415 (55.18%), Query Frame = 1
BLAST of Spo07772.1 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=1 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 1.200e-62 Identity = 180/416 (43.27%), Postives = 222/416 (53.37%), Query Frame = 1
BLAST of Spo07772.1 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 1.500e-57 Identity = 175/397 (44.08%), Postives = 211/397 (53.15%), Query Frame = 1
BLAST of Spo07772.1 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2) HSP 1 Score: 124.4 bits (311), Expect = 2.700e-27 Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 1
BLAST of Spo07772.1 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 3.700e-24 Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1
BLAST of Spo07772.1 vs. TAIR (Arabidopsis)
Match: AT3G14230.1 (related to AP2 2) HSP 1 Score: 247.3 bits (630), Expect = 1.600e-65 Identity = 178/415 (42.89%), Postives = 229/415 (55.18%), Query Frame = 1
BLAST of Spo07772.1 vs. TAIR (Arabidopsis)
Match: AT1G53910.1 (related to AP2 12) HSP 1 Score: 241.9 bits (616), Expect = 6.600e-64 Identity = 180/416 (43.27%), Postives = 222/416 (53.37%), Query Frame = 1
BLAST of Spo07772.1 vs. TAIR (Arabidopsis)
Match: AT3G16770.1 (ethylene-responsive element binding protein) HSP 1 Score: 124.4 bits (311), Expect = 1.500e-28 Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 1
BLAST of Spo07772.1 vs. TAIR (Arabidopsis)
Match: AT2G47520.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 114.0 bits (284), Expect = 2.100e-25 Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1
BLAST of Spo07772.1 vs. TAIR (Arabidopsis)
Match: AT1G72360.2 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 110.5 bits (275), Expect = 2.300e-24 Identity = 83/210 (39.52%), Postives = 107/210 (50.95%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo07772.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo07772.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo07772.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo07772.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|