Spo07784 (gene)

Overview
NameSpo07784
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSAUR-like auxin-responsive family protein
Locationchr1 : 45724429 .. 45724815 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAGCCGGAAAATTAACGAAGCTGAGGTCAGCATTGAAGAAGATGAACTCCTTTAGTAAGCTGCGACGAGAGAACAGCATAAACTGTACACCCGCACCCTCTGATGACTTCCACGTGTCATCAACTAATAATCATAACAATGTTGGTGGGCTACTTCACACAGTCTACGTTGGGAAGTCTCTTCGCCGTTACCAGGTGACGTCAGAGGTGCTTGATAATCCTGTGATTCAAGAGCTTGTTGATAGATCAAACGGCTGTGATGAAGAGACCACAGTAATTGGTTGTGAGGTCGTTTTATTCGAACATTTGTTATGGATGTTGCAGAATATTGACTCGCAATCTGAGTCTCTCGAAGAATTGGTTGGCTTGTATGCTTATTAA

mRNA sequence

ATGGCGAAAGCCGGAAAATTAACGAAGCTGAGGTCAGCATTGAAGAAGATGAACTCCTTTAGTAAGCTGCGACGAGAGAACAGCATAAACTGTACACCCGCACCCTCTGATGACTTCCACGTGTCATCAACTAATAATCATAACAATGTTGGTGGGCTACTTCACACAGTCTACGTTGGGAAGTCTCTTCGCCGTTACCAGGTGACGTCAGAGGTGCTTGATAATCCTGTGATTCAAGAGCTTGTTGATAGATCAAACGGCTGTGATGAAGAGACCACAGTAATTGGTTGTGAGGTCGTTTTATTCGAACATTTGTTATGGATGTTGCAGAATATTGACTCGCAATCTGAGTCTCTCGAAGAATTGGTTGGCTTGTATGCTTATTAA

Coding sequence (CDS)

ATGGCGAAAGCCGGAAAATTAACGAAGCTGAGGTCAGCATTGAAGAAGATGAACTCCTTTAGTAAGCTGCGACGAGAGAACAGCATAAACTGTACACCCGCACCCTCTGATGACTTCCACGTGTCATCAACTAATAATCATAACAATGTTGGTGGGCTACTTCACACAGTCTACGTTGGGAAGTCTCTTCGCCGTTACCAGGTGACGTCAGAGGTGCTTGATAATCCTGTGATTCAAGAGCTTGTTGATAGATCAAACGGCTGTGATGAAGAGACCACAGTAATTGGTTGTGAGGTCGTTTTATTCGAACATTTGTTATGGATGTTGCAGAATATTGACTCGCAATCTGAGTCTCTCGAAGAATTGGTTGGCTTGTATGCTTATTAA

Protein sequence

MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVGKSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLEELVGLYAY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07784.1Spo07784.1mRNA


Homology
[Close]
BLAST of Spo07784.1 vs. NCBI nr
Match: gi|902091086|gb|KNA03323.1| (hypothetical protein SOVF_210310 [Spinacia oleracea])

HSP 1 Score: 255.4 bits (651), Expect = 5.400e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG
Sbjct: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120
           KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE
Sbjct: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120

Query: 121 ELVGLYAY 129
           ELVGLYAY
Sbjct: 121 ELVGLYAY 128
[Close]
BLAST of Spo07784.1 vs. NCBI nr
Match: gi|731349677|ref|XP_010686117.1| (PREDICTED: uncharacterized protein LOC104900399 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 213.0 bits (541), Expect = 3.100e-52
Identity = 108/128 (84.38%), Postives = 120/128 (93.75%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAKAGKLTKLRSALKKMNSF KLRRENS+NCTPAPSD+ HVS  N++NN+G  LHTVYVG
Sbjct: 1   MAKAGKLTKLRSALKKMNSFGKLRRENSVNCTPAPSDECHVS--NHNNNIG--LHTVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120
           KSLRRYQVTSEVLD+P+I+ELVD+S+GCD+ TTVIGCEVVLFEHLLWMLQNIDSQSESLE
Sbjct: 61  KSLRRYQVTSEVLDHPLIKELVDKSDGCDDHTTVIGCEVVLFEHLLWMLQNIDSQSESLE 120

Query: 121 ELVGLYAY 129
           +LVG YAY
Sbjct: 121 DLVGFYAY 124
[Close]
BLAST of Spo07784.1 vs. NCBI nr
Match: gi|595821107|ref|XP_007204762.1| (hypothetical protein PRUPE_ppa013393mg [Prunus persica])

HSP 1 Score: 130.2 bits (326), Expect = 2.600e-27
Identity = 70/127 (55.12%), Postives = 84/127 (66.14%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAK GKLTKL+S LKK NSFSK     S+N   +P DDF  S       +   L  VYVG
Sbjct: 1   MAKGGKLTKLKSVLKKWNSFSKQNSRPSLNSVVSPDDDFSSSPAV----ISADLRPVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120
           KS RRY V S+V+D+P+ +EL DRS   D+ T  + CEVVLFEHLLWML+N D Q ES++
Sbjct: 61  KSRRRYLVNSDVVDHPLFKELADRSGDSDDHTINVACEVVLFEHLLWMLENADPQPESMD 120

Query: 121 ELVGLYA 128
           ELV  YA
Sbjct: 121 ELVEFYA 123
[Close]
BLAST of Spo07784.1 vs. NCBI nr
Match: gi|1000973166|ref|XP_015572926.1| (PREDICTED: auxin-responsive protein SAUR72 [Ricinus communis])

HSP 1 Score: 126.7 bits (317), Expect = 2.900e-26
Identity = 69/127 (54.33%), Postives = 94/127 (74.02%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAK GKLTKL+S LKK+NSF+  +   S +   A +DD   SST++++   G LH VYVG
Sbjct: 1   MAKGGKLTKLKSVLKKLNSFNSKQSRPSGSSIAATADD---SSTSSYS--VGDLHPVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120
           KS RRY ++S+++D+P+ +EL +RS+  D+ T  I CEVVLFEHLLWML+N D+Q+ESL+
Sbjct: 61  KSRRRYLISSDIIDHPLFRELAERSSESDDHTISIACEVVLFEHLLWMLENGDTQAESLD 120

Query: 121 ELVGLYA 128
           ELV  YA
Sbjct: 121 ELVEFYA 122
[Close]
BLAST of Spo07784.1 vs. NCBI nr
Match: gi|694431967|ref|XP_009343359.1| (PREDICTED: uncharacterized protein LOC103935323 [Pyrus x bretschneideri])

HSP 1 Score: 126.3 bits (316), Expect = 3.800e-26
Identity = 69/127 (54.33%), Postives = 87/127 (68.50%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAK GKLTKL+S LKK NSFSK     S+N   + +DD + +       + G LH VYVG
Sbjct: 1   MAKGGKLTKLKSVLKKWNSFSKQNSRRSLNSVVSAADDDYSTDVI----ISGDLHPVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120
           KS RRY V S+V+D+P+ +EL DRS   D++T  + CEVVLFEHLLWML+N D Q ES++
Sbjct: 61  KSRRRYLVASDVVDHPLFKELADRS---DDDTINVACEVVLFEHLLWMLENADPQPESMD 120

Query: 121 ELVGLYA 128
           ELV  YA
Sbjct: 121 ELVEFYA 120
[Close]
BLAST of Spo07784.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9F5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_210310 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.700e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG
Sbjct: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120
           KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE
Sbjct: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120

Query: 121 ELVGLYAY 129
           ELVGLYAY
Sbjct: 121 ELVGLYAY 128
[Close]
BLAST of Spo07784.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EP37_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g169500 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.100e-52
Identity = 108/128 (84.38%), Postives = 120/128 (93.75%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAKAGKLTKLRSALKKMNSF KLRRENS+NCTPAPSD+ HVS  N++NN+G  LHTVYVG
Sbjct: 1   MAKAGKLTKLRSALKKMNSFGKLRRENSVNCTPAPSDECHVS--NHNNNIG--LHTVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120
           KSLRRYQVTSEVLD+P+I+ELVD+S+GCD+ TTVIGCEVVLFEHLLWMLQNIDSQSESLE
Sbjct: 61  KSLRRYQVTSEVLDHPLIKELVDKSDGCDDHTTVIGCEVVLFEHLLWMLQNIDSQSESLE 120

Query: 121 ELVGLYAY 129
           +LVG YAY
Sbjct: 121 DLVGFYAY 124
[Close]
BLAST of Spo07784.1 vs. UniProtKB/TrEMBL
Match: K4DC17_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.800e-28
Identity = 74/129 (57.36%), Postives = 91/129 (70.54%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVS--STNNHNNVGGLLHTVY 60
           M K GKLTK++S LKKM SF KL R NSIN T    ++ + S    NN+NN    LH VY
Sbjct: 1   MTKGGKLTKIKSVLKKMQSF-KLGRVNSINNTIMLENNAYNSYEDDNNNNNNDDNLHPVY 60

Query: 61  VGKSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSES 120
           VGKS RRY VTS+V+D+P+ +EL++R  G  EE   +GCEVVLFEHLLWMLQN D Q ES
Sbjct: 61  VGKSRRRYLVTSDVIDHPLFRELIERRRGDSEEYVSVGCEVVLFEHLLWMLQNADPQPES 120

Query: 121 LEELVGLYA 128
           ++ELV  Y+
Sbjct: 121 MDELVEFYS 128
[Close]
BLAST of Spo07784.1 vs. UniProtKB/TrEMBL
Match: M5VXZ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013393mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.800e-27
Identity = 70/127 (55.12%), Postives = 84/127 (66.14%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAK GKLTKL+S LKK NSFSK     S+N   +P DDF  S       +   L  VYVG
Sbjct: 1   MAKGGKLTKLKSVLKKWNSFSKQNSRPSLNSVVSPDDDFSSSPAV----ISADLRPVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESLE 120
           KS RRY V S+V+D+P+ +EL DRS   D+ T  + CEVVLFEHLLWML+N D Q ES++
Sbjct: 61  KSRRRYLVNSDVVDHPLFKELADRSGDSDDHTINVACEVVLFEHLLWMLENADPQPESMD 120

Query: 121 ELVGLYA 128
           ELV  YA
Sbjct: 121 ELVEFYA 123
[Close]
BLAST of Spo07784.1 vs. UniProtKB/TrEMBL
Match: M0ZT41_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400002896 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.100e-27
Identity = 71/128 (55.47%), Postives = 90/128 (70.31%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVS-STNNHNNVGGLLHTVYV 60
           M K GKLTK++S LKKM SF K+ R NSIN T    ++ + S   +N+NN    LH VYV
Sbjct: 1   MTKGGKLTKIKSVLKKMQSF-KIGRVNSINNTNMLENNAYNSFEDDNNNNNNNNLHPVYV 60

Query: 61  GKSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIGCEVVLFEHLLWMLQNIDSQSESL 120
           GKS RRY VTS+V+D+P+ +EL++R     EE   +GCEVVLFEHLLWMLQN D Q ES+
Sbjct: 61  GKSRRRYLVTSDVIDHPLFRELIERRTSDSEEYVSVGCEVVLFEHLLWMLQNADPQPESM 120

Query: 121 EELVGLYA 128
           +ELV  Y+
Sbjct: 121 DELVEFYS 127
[Close]
BLAST of Spo07784.1 vs. TAIR (Arabidopsis)
Match: AT1G72430.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-19
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MAK GKLTKL+SA+KK  SF+K    ++ +   A SD+  +S  NN       LH VYVG
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAKNHHHSTSSA--AVSDE--LSEDNN-------LHVVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGC---DEETTVIGCEVVLFEHLLWMLQNIDSQSE 120
           ++ R Y +  +++ +P+ QELVDRS+      +   V+ CEVVLFEHLLWML++   +  
Sbjct: 61  QTRRPYMLRPDIISHPLFQELVDRSSSRSIEQDREIVVACEVVLFEHLLWMLKS-GQEGG 119

Query: 121 SLEELVGLYAY 129
           S+EEL   Y Y
Sbjct: 121 SVEELAEFYTY 119
[Close]
BLAST of Spo07784.1 vs. TAIR (Arabidopsis)
Match: AT1G17345.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 92.8 bits (229), Expect = 1.600e-19
Identity = 62/141 (43.97%), Postives = 83/141 (58.87%), Query Frame = 1 

		  

Query: 1   MAKAGKLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYVG 60
           MA  GKLTKL+SA+KK  S +K    +S  CT + +    VS  +   +    LH VYVG
Sbjct: 1   MAIFGKLTKLKSAIKKWPSLTK--NHHSTMCTASTA----VSEVSKCED----LHVVYVG 60

Query: 61  KSLRRYQVTSEVLDNPVIQELVDRSNGC-----DEETTVIGCEVVLFEHLLWMLQNI--- 120
           KS R Y ++S V+ +P+ QEL+DRS+       D+ET ++ CEVVLFEHLLWML+N    
Sbjct: 61  KSRRPYMLSSHVIAHPLFQELLDRSSRFIEERHDQETVLVACEVVLFEHLLWMLKNSSSD 120

Query: 121 -----DSQSESLEELVGLYAY 129
                D +  S+EEL   Y Y
Sbjct: 121 HGDEDDRERGSVEELAEFYTY 131
[Close]
BLAST of Spo07784.1 vs. TAIR (Arabidopsis)
Match: AT5G20820.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 88.2 bits (217), Expect = 4.000e-18
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 1 

		  

Query: 1   MAKAG-KLTKLRSALKKMNSFSKLRRENSINCTPAPSDDFHVSSTNNHNNVGGLLHTVYV 60
           MAK G KL KL+S LKK+NSF+        N  PA ++    S+ +   +    L TVYV
Sbjct: 1   MAKGGNKLMKLKSVLKKLNSFN-----TKPNQPPAQTNHSRSSAVSAFPSED--LQTVYV 60

Query: 61  GKSLRRYQVTSEVLDNPVIQELVDRSNGCDEE--TTVIGCEVVLFEHLLWMLQNID---S 120
           G++ R Y V+S+V+ +P+ Q+L     GC  E  +  + CEVVLFEHLLWML+N D   S
Sbjct: 61  GRTRRTYHVSSDVVSHPLFQQLAAVDGGCGSEDGSISVSCEVVLFEHLLWMLENADADES 120

Query: 121 QSESLEELVGLYA 128
           + ES+ ELV  YA
Sbjct: 121 RPESVYELVEFYA 126
[Close]
BLAST of Spo07784.1 vs. TAIR (Arabidopsis)
Match: AT3G12955.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.0 bits (123), Expect = 3.200e-7
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1 

		  

Query: 53  LLHTVYVGKSLRRYQVTSEVLDNPVIQELVDRSNGCDEETTVIG-------CEVVLFEHL 112
           +  TV VG++ + Y ++ + L +P++  LV++    +E+    G       CEVVLF+HL
Sbjct: 54  MYQTVLVGRTKKPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHL 113

Query: 113 LWMLQNIDSQS--ESLEELVGLY 127
           LWML+  D     ESL++   LY
Sbjct: 114 LWMLEYGDEVHILESLDDFAHLY 136
The following BLAST results are available for this feature:
BLAST of Spo07784.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902091086|gb|KNA03323.1|5.4e-65100.hypothetical protein SOVF_2103... [more]
gi|731349677|ref|XP_010686117.1|3.1e-5284.3PREDICTED: uncharacterized pro... [more]
gi|595821107|ref|XP_007204762.1|2.6e-2755.1hypothetical protein PRUPE_ppa... [more]
gi|1000973166|ref|XP_015572926.1|2.9e-2654.3PREDICTED: auxin-responsive pr... [more]
gi|694431967|ref|XP_009343359.1|3.8e-2654.3PREDICTED: uncharacterized pro... [more]
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BLAST of Spo07784.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q9F5_SPIOL3.7e-65100.Uncharacterized protein OS=Spi... [more]
A0A0J8EP37_BETVU2.1e-5284.3Uncharacterized protein OS=Bet... [more]
K4DC17_SOLLC2.8e-2857.3Uncharacterized protein OS=Sol... [more]
M5VXZ9_PRUPE1.8e-2755.1Uncharacterized protein OS=Pru... [more]
M0ZT41_SOLTU3.1e-2755.4Uncharacterized protein OS=Sol... [more]
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BLAST of Spo07784.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07784.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT1G72430.11.2e-1944.2SAUR-like auxin-responsive pro... [more]
AT1G17345.11.6e-1943.9SAUR-like auxin-responsive pro... [more]
AT5G20820.14.0e-1844.3SAUR-like auxin-responsive pro... [more]
AT3G12955.13.2e-734.9SAUR-like auxin-responsive pro... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 27..109
score: 2.0
NoneNo IPR availablePANTHERPTHR31374FAMILY NOT NAMEDcoord: 1..127
score: 1.2
NoneNo IPR availablePANTHERPTHR31374:SF5SUBFAMILY NOT NAMEDcoord: 1..127
score: 1.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:2000038 regulation of stomatal complex development
biological_process GO:2000037 regulation of stomatal complex patterning
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009409 response to cold
biological_process GO:0006857 oligopeptide transport
biological_process GO:0010224 response to UV-B
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process GO:0030001 metal ion transport
biological_process GO:0008152 metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006073 cellular glucan metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0006468 protein phosphorylation
biological_process GO:0043900 regulation of multi-organism process
biological_process GO:0001666 response to hypoxia
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0050832 defense response to fungus
biological_process GO:0016310 phosphorylation
biological_process GO:0080136 priming of cellular response to stress
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0000169 activation of MAPK activity involved in osmosensory signaling pathway
biological_process GO:0010120 camalexin biosynthetic process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009741 response to brassinosteroid
biological_process GO:0009595 detection of biotic stimulus
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0048481 plant ovule development
biological_process GO:0010229 inflorescence development
cellular_component GO:0005834 heterotrimeric G-protein complex
cellular_component GO:0005618 cell wall
cellular_component GO:0016020 membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
cellular_component GO:0048046 apoplast
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0016762 xyloglucan:xyloglucosyl transferase activity
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004707 MAP kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo031840.82Barchart | Table
Spo041290.82Barchart | Table
Spo084190.81Barchart | Table
Spo198880.81Barchart | Table
Spo268990.79Barchart | Table
Spo006110.79Barchart | Table
Spo108260.78Barchart | Table
Spo020910.78Barchart | Table
Spo165870.78Barchart | Table
Spo215090.77Barchart | Table
Spo238420.77Barchart | Table
Spo238430.76Barchart | Table
Spo253500.75Barchart | Table
Spo217850.75Barchart | Table
Spo201740.75Barchart | Table
Spo097610.75Barchart | Table
Spo177130.75Barchart | Table
Spo096360.74Barchart | Table
Spo166480.74Barchart | Table
Spo198680.74Barchart | Table
Spo035580.73Barchart | Table
Spo072150.72Barchart | Table
Spo091860.72Barchart | Table
Spo123280.72Barchart | Table
Spo025480.71Barchart | Table
Spo230360.71Barchart | Table
Spo177250.71Barchart | Table
Spo271650.71Barchart | Table
Spo158660.71Barchart | Table
Spo074840.71Barchart | Table
Spo006180.71Barchart | Table
Spo027320.69Barchart | Table
Spo087690.69Barchart | Table
Spo104850.69Barchart | Table
Spo142940.69Barchart | Table
Spo142950.69Barchart | Table
Spo146820.69Barchart | Table
Spo042010.69Barchart | Table
Spo207290.68Barchart | Table
Spo083250.68Barchart | Table
Spo117250.68Barchart | Table
Spo260130.68Barchart | Table
Spo058420.68Barchart | Table
Spo237700.68Barchart | Table
Spo270310.68Barchart | Table
Spo127120.68Barchart | Table
Spo134990.67Barchart | Table
Spo172410.67Barchart | Table
Spo109070.67Barchart | Table
Spo177530.67Barchart | Table
Spo183830.67Barchart | Table
Spo093330.67Barchart | Table
Spo216760.67Barchart | Table
Spo096350.67Barchart | Table
Spo121640.67Barchart | Table
Spo266780.67Barchart | Table
Spo058140.66Barchart | Table
Spo107370.66Barchart | Table
Spo043790.66Barchart | Table
Spo121450.66Barchart | Table
Spo087450.66Barchart | Table
Spo001960.66Barchart | Table
Spo166400.66Barchart | Table
Spo007820.66Barchart | Table
Spo093340.65Barchart | Table
Spo221640.65Barchart | Table
Spo024810.65Barchart | Table
Spo247690.65Barchart | Table
Spo032030.65Barchart | Table