Spo07829 (gene)

Overview
NameSpo07829
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00153 : 597673 .. 599800 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCACTGACTAATTTTTTCTGTTTTCTTTTTTATTATTGTATTCCCTAATCACTCTCATGTCTGCTTCTCGGTGTTTCCTCTCCAGCCTTCCTTCCCTTTCTCTCTCCTCCCCCATCCTCTATGTCCTATAAGCTTGAACCCTGAAAATGGCCGACTTCTTCTTCAAGACCAAGAAAGTCAAGGTTGTTCTCCAAAGACTCCCATCTCTCTACTGGTTACGATTTATCCAGGTTTCTCTCTCCTCTCTAGAACATTCTAAAGTTACCACTTACCACTACTTGAAACATACCAACTATTCAAATTGAAACCCAGTTTCTTAAATCTACGAAATTGCATCTGCGAAATTGTTGGGAAGCTTTGGTTCCTACTGATTTGAGTATTGTTGTTCTTCGATCAAGGAACATATGCCCAATTTGGTATGTTTTCTCTCTTATTTGATGTTCCAGAAATTACCCAGTAATTTGATTGAGGAAATCGTATTTGTTCCTTGTTTTTCTTTGAAGCATTTGGTCAAACACATTGTGTGCATGTATTGATTTTTTGTCCGAATATTGAGGCAAACATTTTTATCTCAATTGTGATTTATATTAGGAAATTGTTGTCAAATTTTGGTAGATAATACCGAGTATTATATTGGATCATCACCCGCAATATGGTATATGGTGATTTGCACTCATCTTTTGTGTAATTTCTTTCGCTAAACTTCATCATTAATTTGATGAGAAATGTCTACAGAAAGTCTGTTATATTGATGAAATGCTAGAGAGATGAGCTTTTTAAAACTTTGAACCAACGAATTATTGTAACTATATGAAAATAAAGCAGGTTAATTGAAAATCTAAAGAATGAATCCGACCTTATTTTAGAACATTGGGAATAGATGAATTTGGCTTTGATCTTTTCCTTGTTATTTGATCGGCCATACTTGATGGACCTAGCTTGGAAGAACGAATAAGACCTTCATTAATGTAAGCAATGTCCATATTCTGTGGTAAAGAATCGACTTGATATTGATAGATGGCTTGACTCCCCCGCCACTTCTACAGGACACTCCTGTTGAACCACAACGTTATTATAAGCTCTTGGAGAAGGATACAATACAATTTGTAATAGCACGTAAGTGTAGTTTGGTTTCTGAAGCATCCATTCGGTCCATTCCCAGTAGCCCCTCTGCATCGTTTATTCATTAAATTTTATTTTCGGAAAATGTTTGTTTCATGATCTAATACATGGGTTTCTACAGTCGAGAATATTTGCTGCTGCATGAGAACTCCAATACCAAATCAACCTCAGCTACCAGACTCATAGTTGTCGTTGATGGCGCGAGAATATGCATAAGGATTCTTGCAGGATTTTCTTCAATCTTGCGAATGTGTTGCAAGTTCAACTTGCGAATGTGTTGCTCGTGTTGCTGATCTCTTAAACTTGTAAGTTGCTTGTTCTCGAAGTTAAAAGATCATTCATTTAGAGCTTATGTGTCAAGGTGGACCTTTTATTATTGTTTTTCCCTTCAGGTATGACTATGTACTGTGTTGTGGACTTTTGGCCTAATAGTTGTCATTGAACAACTTAATATTGAAAAATATGAATCAGTATACTTTGGACTTTGGAGTGTTATACCTAAAACTATGTATACAAGTCACTGGCTTCTTTTGTGTATGTGGCTCGATCTATCACTCTGTATTGATGTCAGCGAGGTTTATTAGAGGTGGGTTAATAGCCTACAAATTGTGCAAACCTGAAATACCTGCGTGCAAATTACAGTTTTTGTTTCTACTTGTGGAGTGTTTTTAAGAACATGTGAGTTATCATCATTTAGTGATTGAGTTGGGACTTGAGAGAGGATAAACGATTCATGATATTTTGTTCTGACTACTTCCCTTTTGGGCAATAGAATCTCAAGAATTTAGAGTGAAGTTCCTAATGCTAATACAAATATTTGGACACTACTAGAGAGACTAAGAAATGAAGCTCTAAGTTGTAGTTTATCTTGCTTAATTGTGTTCACAGATCACCCCATATTTCTATTTCACTTAAGTCTCCCCTCCCCCTCCCCCTCCCCCTTTCTCTTCCAATTTGATTACTGGCATACTATTGGGGACTTATGCAATCAGTATAAACTATGA

mRNA sequence

TATCACTGACTAATTTTTTCTGTTTTCTTTTTTATTATTGTATTCCCTAATCACTCTCATGTCTGCTTCTCGGTGTTTCCTCTCCAGCCTTCCTTCCCTTTCTCTCTCCTCCCCCATCCTCTATGTCCTATAAGCTTGAACCCTGAAAATGGCCGACTTCTTCTTCAAGACCAAGAAAGTCAAGGTTGTTCTCCAAAGACTCCCATCTCTCTACTGGTTACGATTTATCCAGGTTTCTCTCTCCTCTCTAGAACATTCTAAAGTTACCACTTACCACTACTTGAAACATACCAACTATTCAAATTGAAACCCAGTTTCTTAAATCTACGAAATTGCATCTGCGAAATTGTTGGGAAGCTTTGGTTCCTACTGATTTGAGTATTGTTGTTCTTCGATCAAGGAACATATGCCCAATTTGGACACTCCTGTTGAACCACAACGTTATTATAAGCTCTTGGAGAAGGATACAATACAATTTGTAATAGCACAGAGACTAAGAAATGAAGCTCTAAGTTGTAGTTTATCTTGCTTAATTGTGTTCACAGATCACCCCATATTTCTATTTCACTTAAGTCTCCCCTCCCCCTCCCCCTCCCCCTTTCTCTTCCAATTTGATTACTGGCATACTATTGGGGACTTATGCAATCAGTATAAACTATGA

Coding sequence (CDS)

ATGCCCAATTTGGACACTCCTGTTGAACCACAACGTTATTATAAGCTCTTGGAGAAGGATACAATACAATTTGTAATAGCACAGAGACTAAGAAATGAAGCTCTAAGTTGTAGTTTATCTTGCTTAATTGTGTTCACAGATCACCCCATATTTCTATTTCACTTAAGTCTCCCCTCCCCCTCCCCCTCCCCCTTTCTCTTCCAATTTGATTACTGGCATACTATTGGGGACTTATGCAATCAGTATAAACTATGA

Protein sequence

MPNLDTPVEPQRYYKLLEKDTIQFVIAQRLRNEALSCSLSCLIVFTDHPIFLFHLSLPSPSPSPFLFQFDYWHTIGDLCNQYKL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07829.1Spo07829.1mRNA


Homology
[Close]
BLAST of Spo07829.1 vs. NCBI nr
Match: gi|902201715|gb|KNA14046.1| (hypothetical protein SOVF_110980 [Spinacia oleracea])

HSP 1 Score: 58.9 bits (141), Expect = 4.800e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 

		  

Query: 1  MPNLDTPVEPQRYYKLLEKDTIQFVIA 28
          MPNLDTPVEPQRYYKLLEKDTIQFVIA
Sbjct: 1  MPNLDTPVEPQRYYKLLEKDTIQFVIA 27
[Close]
BLAST of Spo07829.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3F7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_110980 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.400e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 

		  

Query: 1  MPNLDTPVEPQRYYKLLEKDTIQFVIA 28
          MPNLDTPVEPQRYYKLLEKDTIQFVIA
Sbjct: 1  MPNLDTPVEPQRYYKLLEKDTIQFVIA 27
The following BLAST results are available for this feature:
BLAST of Spo07829.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902201715|gb|KNA14046.1|4.8e-6100.hypothetical protein SOVF_1109... [more]
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BLAST of Spo07829.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R3F7_SPIOL3.4e-6100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo07829.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07829.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0008612 peptidyl-lysine modification to peptidyl-hypusine
biological_process GO:0050983 obsolete deoxyhypusine biosynthetic process from spermidine
biological_process GO:0009553 embryo sac development
biological_process GO:0009651 response to salt stress
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0008152 metabolic process
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0043090 amino acid import
biological_process GO:0007165 signal transduction
biological_process GO:0006952 defense response
biological_process GO:0071310 cellular response to organic substance
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0042908 xenobiotic transport
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0000325 plant-type vacuole
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0034038 deoxyhypusine synthase activity
RNA-Seq Expression