Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAATCAAACTCCCACTTTCTACGTGTATAAATTGATATGTTGAGCATGCAACTCAACCACAACACAAACCAAAATAAAAACAAACACACTTATTTGCATCTTATTTTCGGCGTAAGAAATGGCTCAAGCAATCGTAAAGGTGTGTCTTCATTGTTTACGCGTCACTAATATATAAATTAACTCTTACATACCATTTTTTACTTTTAATTATGTCATTTAAGTTATTTGGTTATCTTAATTAAGTTACTTAATTAATTGGGACTTACTATTTTATTTTTTATTTTTTGCTTAATTTTATAGAACCAAGAGGTTGAATACTACGGACCTTATGGTTCTAAGCTCCCAGAAAACTATCGCATGCAACTTGTTAATGGAGAACGTTTCAAAGAAGTTACAGTAAGGCATGGGGACGTAGTGGACGCATTGAGGTTCGTGGTAGCTAAGCCAGATGGGACTACCAACACTTACCAGTTTGGTGGAAACACCGGCGCTGTAAGCAAGGTTAGACTAACATGTACTAATATATATATAGTAACGTATACATCTTTAAATCTTCATTTTTAGTGAGTTAATATATATTTTCCTACAAGTCATTTAACATATAATTATTCCTCCGATTTTTTTCCCTTAAAATGCATATCTAAAGATAGCGCTCAAGGATGGCGAGTACTTGACAAAAATCAGTGGTACTTCTGGAAACTACACATACCAAGGTAATAATGTGATGATTGCTACAGTGAAGATACACACCAACTTAAATCCGAATGGATATGGACCATTTGGAACCGGTAGATTCGTCAAAAATATGGAGAAATTTTCATCACCGGACAAGAATAATTTACCTATTGTTGGATTTATGGGGAGGAACGGCACATATGTCGAGTCGGTTGGAATCATGATCTCAAAGGTAACATATACGTAGTACAAGTAGTACTTACCAAATACTTCAATTTAATCAAGGTTAATTGAGTGATTAAACTTGAGTGAATCACTACGTATGATCTTAATCCCCCTTTTAAATATTTCCACTTGCTTCTCATTTTTTCTAGCTTATTGTTTAATATTTCAGCTTTAACTTTAATCGTATTTACAAAGTCACTATAGGTTAATTTAAAATAAACCTGGCAATAATTTATTTACAAAGATTAGCTTGTATTTTGACATGTGAGGATGAAAAAACTTGAAAATTAAGATGACTAGCTTATCTAGTAGTACGAAATCCAAAATAATTTATACGTCTCGTACTGATTATCATATTTTGTTTATGATGTTGGTAGGCACCAGAGATTGAAATTTTTGGGCCTTATGGTTCTAAGCTCCCACAAAACTATGACCAACAACTTGAAGACGGGGAACGTTACAAAGAAATTACAGTAACACATGGGTCTATAGTGGATTCACTCGGATTCGTGGTAGCTAAGCGAGATGGGAGTACTGCCACTTATCAGTTTGGTGGCAAAGGCGCACATGTAGGCAAGGTTAGACCGACATATGTGCATGTTTAATCTTCATTTTTTTCCGAATAATACTATACTTAATTTCAAGTCCTTTAACGTGCAATAACGCCCCGTTCTTTTTTTCTTAAAATACATATCTAAAGATAATACTCAAAGATGGAGAATACCCAACAGCAATTAGTGGAACATCTGGCAACTATAAATATCAAAGTGATAATGGTGTGTTGATTGCTACTATGAAAATACACACTAATATGAATACGAATGGATACGGACCATTTGGAAAAGGTATTGACGTCCAAAATGTGGAGAAATTTTCATCACCAAACATGATTAGTAGTCCTATTATTGGATTTTTTGGAAGGAATGGCAGGTATCTCGAGGCCGCAGGAGTCCTGGTCCAAAAGGTAAGACATATACTAATTACCAAATACTTCAATTTAATCAAGGCTCAACACTATATATGTTTTTTTTATTCAAACAACACTATATATGTGCTAATGCTTCTTTGTATTTCAAATATAGGGATCCCCTCCAAAGAATTAAACGCAAGGTGATGGATGACGTATGAGTAAATACGTTCATTATGTGTACTTTCTATTTTCTAATAAGCCACATTAATTTATATATTATGAGTGAGTGGCCTCTCAAGAGTGATTGTAATCATAAACTTGAGTGAATGTTGTATTGTATTTTCCTAATTTACGCTATGTATTGTCTTATCTAAGATAATATAAAGTCTCATTTCCCCTTTTCAATATTTTCGCGAGTTAAGTTAAAGAATGGGGTCTCATCTTTCACATTTAATCAAATTAAATAATGACTAGTTTAGGGCCCG TAAAATCAAACTCCCACTTTCTACGTGTATAAATTGATATGTTGAGCATGCAACTCAACCACAACACAAACCAAAATAAAAACAAACACACTTATTTGCATCTTATTTTCGGCGTAAGAAATGGCTCAAGCAATCGTAAAGAACCAAGAGGTTGAATACTACGGACCTTATGGTTCTAAGCTCCCAGAAAACTATCGCATGCAACTTGTTAATGGAGAACGTTTCAAAGAAGTTACAGTAAGGCATGGGGACGTAGTGGACGCATTGAGGTTCGTGGTAGCTAAGCCAGATGGGACTACCAACACTTACCAGTTTGGTGGAAACACCGGCGCTGTAAGCAAGATAGCGCTCAAGGATGGCGAGTACTTGACAAAAATCAGTGGTACTTCTGGAAACTACACATACCAAGGTAATAATGTGATGATTGCTACAGTGAAGATACACACCAACTTAAATCCGAATGGATATGGACCATTTGGAACCGGTAGATTCGTCAAAAATATGGAGAAATTTTCATCACCGGACAAGAATAATTTACCTATTGTTGGATTTATGGGGAGGAACGGCACATATGTCGAGTCGGTTGGAATCATGATCTCAAAGGCACCAGAGATTGAAATTTTTGGGCCTTATGGTTCTAAGCTCCCACAAAACTATGACCAACAACTTGAAGACGGGGAACGTTACAAAGAAATTACAGTAACACATGGGTCTATAGTGGATTCACTCGGATTCGTGGTAGCTAAGCGAGATGGGAGTACTGCCACTTATCAGTTTGGTGGCAAAGGCGCACATGTAGGCAAGATAATACTCAAAGATGGAGAATACCCAACAGCAATTAGTGGAACATCTGGCAACTATAAATATCAAAGTGATAATGGTGTGTTGATTGCTACTATGAAAATACACACTAATATGAATACGAATGGATACGGACCATTTGGAAAAGGTATTGACGTCCAAAATGTGGAGAAATTTTCATCACCAAACATGATTAGTAGTCCTATTATTGGATTTTTTGGAAGGAATGGCAGGGATCCCCTCCAAAGAATTAAACGCAAGGTGATGGATGACGTATGAGTAAATACGTTCATTATGTGTACTTTCTATTTTCTAATAAGCCACATTAATTTATATATTATGAGTGAGTGGCCTCTCAAGAGTGATTGTAATCATAAACTTGAGTGAATGTTGTATTGTATTTTCCTAATTTACGCTATGTATTGTCTTATCTAAGATAATATAAAGTCTCATTTCCCCTTTTCAATATTTTCGCGAGTTAAGTTAAAGAATGGGGTCTCATCTTTCACATTTAATCAAATTAAATAATGACTAGTTTAGGGCCCG ATGGCTCAAGCAATCGTAAAGAACCAAGAGGTTGAATACTACGGACCTTATGGTTCTAAGCTCCCAGAAAACTATCGCATGCAACTTGTTAATGGAGAACGTTTCAAAGAAGTTACAGTAAGGCATGGGGACGTAGTGGACGCATTGAGGTTCGTGGTAGCTAAGCCAGATGGGACTACCAACACTTACCAGTTTGGTGGAAACACCGGCGCTGTAAGCAAGATAGCGCTCAAGGATGGCGAGTACTTGACAAAAATCAGTGGTACTTCTGGAAACTACACATACCAAGGTAATAATGTGATGATTGCTACAGTGAAGATACACACCAACTTAAATCCGAATGGATATGGACCATTTGGAACCGGTAGATTCGTCAAAAATATGGAGAAATTTTCATCACCGGACAAGAATAATTTACCTATTGTTGGATTTATGGGGAGGAACGGCACATATGTCGAGTCGGTTGGAATCATGATCTCAAAGGCACCAGAGATTGAAATTTTTGGGCCTTATGGTTCTAAGCTCCCACAAAACTATGACCAACAACTTGAAGACGGGGAACGTTACAAAGAAATTACAGTAACACATGGGTCTATAGTGGATTCACTCGGATTCGTGGTAGCTAAGCGAGATGGGAGTACTGCCACTTATCAGTTTGGTGGCAAAGGCGCACATGTAGGCAAGATAATACTCAAAGATGGAGAATACCCAACAGCAATTAGTGGAACATCTGGCAACTATAAATATCAAAGTGATAATGGTGTGTTGATTGCTACTATGAAAATACACACTAATATGAATACGAATGGATACGGACCATTTGGAAAAGGTATTGACGTCCAAAATGTGGAGAAATTTTCATCACCAAACATGATTAGTAGTCCTATTATTGGATTTTTTGGAAGGAATGGCAGGGATCCCCTCCAAAGAATTAAACGCAAGGTGATGGATGACGTATGA MAQAIVKNQEVEYYGPYGSKLPENYRMQLVNGERFKEVTVRHGDVVDALRFVVAKPDGTTNTYQFGGNTGAVSKIALKDGEYLTKISGTSGNYTYQGNNVMIATVKIHTNLNPNGYGPFGTGRFVKNMEKFSSPDKNNLPIVGFMGRNGTYVESVGIMISKAPEIEIFGPYGSKLPQNYDQQLEDGERYKEITVTHGSIVDSLGFVVAKRDGSTATYQFGGKGAHVGKIILKDGEYPTAISGTSGNYKYQSDNGVLIATMKIHTNMNTNGYGPFGKGIDVQNVEKFSSPNMISSPIIGFFGRNGRDPLQRIKRKVMDDV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo07872.1 vs. NCBI nr
Match: gi|902116757|gb|KNA03916.1| (hypothetical protein SOVF_204650 [Spinacia oleracea]) HSP 1 Score: 627.9 bits (1618), Expect = 9.900e-177 Identity = 304/305 (99.67%), Postives = 305/305 (100.00%), Query Frame = 1
BLAST of Spo07872.1 vs. NCBI nr
Match: gi|902197517|gb|KNA13444.1| (hypothetical protein SOVF_116660 [Spinacia oleracea]) HSP 1 Score: 406.0 bits (1042), Expect = 6.100e-110 Identity = 203/307 (66.12%), Postives = 235/307 (76.55%), Query Frame = 1
BLAST of Spo07872.1 vs. NCBI nr
Match: gi|902204590|gb|KNA14922.1| (hypothetical protein SOVF_102940 [Spinacia oleracea]) HSP 1 Score: 322.4 bits (825), Expect = 8.900e-85 Identity = 156/223 (69.96%), Postives = 185/223 (82.96%), Query Frame = 1
BLAST of Spo07872.1 vs. NCBI nr
Match: gi|731329754|ref|XP_010675763.1| (PREDICTED: uncharacterized protein LOC104891724 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 298.9 bits (764), Expect = 1.100e-77 Identity = 152/304 (50.00%), Postives = 196/304 (64.47%), Query Frame = 1
BLAST of Spo07872.1 vs. NCBI nr
Match: gi|731329758|ref|XP_010675764.1| (PREDICTED: uncharacterized protein LOC104891724 isoform X3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 298.9 bits (764), Expect = 1.100e-77 Identity = 152/304 (50.00%), Postives = 196/304 (64.47%), Query Frame = 1
BLAST of Spo07872.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBJ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_204650 PE=4 SV=1) HSP 1 Score: 627.9 bits (1618), Expect = 6.900e-177 Identity = 304/305 (99.67%), Postives = 305/305 (100.00%), Query Frame = 1
BLAST of Spo07872.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3C7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_116660 PE=4 SV=1) HSP 1 Score: 406.0 bits (1042), Expect = 4.300e-110 Identity = 203/307 (66.12%), Postives = 235/307 (76.55%), Query Frame = 1
BLAST of Spo07872.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7Z8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_102940 PE=4 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 6.200e-85 Identity = 156/223 (69.96%), Postives = 185/223 (82.96%), Query Frame = 1
BLAST of Spo07872.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CG81_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g088840 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 7.400e-78 Identity = 152/304 (50.00%), Postives = 196/304 (64.47%), Query Frame = 1
BLAST of Spo07872.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CL65_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g088880 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 6.400e-74 Identity = 151/298 (50.67%), Postives = 192/298 (64.43%), Query Frame = 1
BLAST of Spo07872.1 vs. ExPASy Swiss-Prot
Match: LEC_PARPC (Mannose/glucose-specific lectin (Fragment) OS=Parkia platycephala PE=1 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.300e-15 Identity = 94/307 (30.62%), Postives = 145/307 (47.23%), Query Frame = 1
BLAST of Spo07872.1 vs. ExPASy Swiss-Prot
Match: JAL3_ARATH (Jacalin-related lectin 3 OS=Arabidopsis thaliana GN=JAL3 PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.800e-8 Identity = 56/238 (23.53%), Postives = 103/238 (43.28%), Query Frame = 1
BLAST of Spo07872.1 vs. ExPASy Swiss-Prot
Match: LECA_CASCR (Agglutinin OS=Castanea crenata PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.200e-7 Identity = 76/296 (25.68%), Postives = 128/296 (43.24%), Query Frame = 1
BLAST of Spo07872.1 vs. TAIR (Arabidopsis)
Match: AT1G19715.3 (Mannose-binding lectin superfamily protein) HSP 1 Score: 61.6 bits (148), Expect = 1.000e-9 Identity = 56/238 (23.53%), Postives = 103/238 (43.28%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo07872.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo07872.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo07872.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo07872.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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