Spo07892 (gene)

Overview
NameSpo07892
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 38987266 .. 38992012 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACTCTATCCCCAAGATTGGCATCATCCCAATCATCAACTACTCATAAATATGTTATCACCGTCGAGGACCATAAAAAGGTGTCTACTAATTGGTTGCAAATTTTGAAAAATCAAGCTACGAGAATGAGAAAGAGGGATGAAACCATCTTATTCAGTATCCCAAAAAGGGTTTTTCTTAATGAACATGTGGTAGTGTTATGCTTGATTATGAGGACATCCTTGATTGGTGTTTCTAAGAAGAGATTGGAGCAACTCACTTGAATATTTGCATGAAGTAAGTACATTTCCGTTGTTATATCTCTAATTTGATTTAGAATTTCTTTGTTCATTAACTTATTTTATGTCCTACTTTTGATGGGAGAAGGCATTAGAAAGAAAGATGTTAAGACGAAGGAATTTTGAGTACGTATGGATTTTGCGATAGTAATGTTTTATCTGATCGATCTGAATGTTTAGCTCGTTTCTTTGGGTGTAGCGAGGGAAATAATCACATTGAACTATTCTTTGCACCTGGTAATGAGAAGTAGGTGCAATGTGAATTTTCTAACTTTATTTTCTTTTGATTCTGAAGATAGTTAAAGTGTTGAATTTTATTGATAGTTATTATTTCTCTTATAATTTGTGAACATTTGGAGCTGGATGTTAGCAACCATTAGCCCTTGGAATAGAGCAGTGCATGTATTAGTTGGATCCGACTGGTGCAAGAAAGGAGATCCTCGAGTTCACTAAAGCAGTTATCAATAAGTATGTATTATATCTTTCATTTTCCTTATCTTCTGATATCAACTTTTGCATTATTTGTTCATATTAAGATTTCCTAAAATGATACAAAGAGTATCCAAAGTAATGATTTGTGAACTTGTGAATTGCAAATTAATATGCCACAACTTTCTTACTAGTACTGCAGTATCTTTACATGTTCTAACACTACCAATCGCCATGCTTCGAATCCTTCCCGTCTTCCCGTTGACAGTCACTTTCAATATACCATTTTAAAACTGATTTGCTAATTTATGATGAAAACACATCTGTCTTGGTTTATACGTCATACACTACGCCATAAACGTCAATTAACAGCACCTAATTAATAGCGCTTTTTATAAAACACTATTATTTATATCAAATAACAGCGTTTTATTTTTTATTGCTGATAAAAAGCATCTTTCAATAAAACTGTAGCACTTTAATTTTATTTACGAATTGACATACACGACATTCCCAGTTCCAGACTTGCACTCCTTCCCACCCCTTTCTTCCTTCTATCTCCCACTACTTTCGGTTGGTTACACACTTACACCTTCCTTCTCATTCTCTCCACAATCTCAATTACTCAATCAAATTCATCAAACAAAAAAGAAAATGTCTCTCTCGAAAACTGCATCTGCATCTGATGCTTCCGTTCACTCCACTCTCTCTTCCAGATTTGTTCGGGCCTATCTACCCAGGTATTATTTTTTATCCATACAATCTGAAGATTATATCTCTATCGTTGATCATATTTGTGGTAAATTAATTTTGATTTTGATTTTGTAATTGGAAAATTGGTTAAGATTTCAGATAGATCGATACCGATGGAAGCAGCTTATCAAATCCAAGGTTGAATTTGGCTAAATTGAAGGATTTCCTTCAATCTAAAACTAGGGTTTCTTAATTGGGCTTCTTCTCTGTCGACTTCTACTTCTTATCTAGGGCACATAGTTCCCGACGGATGTGTGGTTGAATTATCAATTGTGAGTATGTATTTTAAATTAGCAATTTAATTTTTCTTTCCAGGTTTTTATCAATTGTAACTAATTTTTCTAGTTTCATATAACAATTTGATATCCTGGTTTACCATTCTTCACACTCGATGTTAGAGATTTGCTTGGTTTCTGATAATATGATTTCAGAAATATTCTTTTAGGAATTAGACCTTAACTATCAGTTGTTGTTGCAACTTTGTTGTTGTTGTAATTGTTGTGTTTGTTGTTAGTTGATGTTGTTGAAGGTGTCATTTTTCATATGTTTGTGTTATTGTGTAGTCACAACTCACAATTTCTTCTTGTTTCTCAGCTATCCAAGTGCTTAACGGTTGTGGATCAAAGGGAAATTAGCACTAACAATAAAATCTATGCTGACTAGTTTGGGGATTTCATATGATTGTAGGTGATAGATACACCAAGTAGCTTTTTGAGCAAAGAAGAATTCAAGAATACTATCTAATGTTTGACACTGAGTTTTTGTTCATGAGCTGGTGAGTGTTCTATCTTTGATTAGTGTTTATAATGTATTTGCCTCAAAACAAATAGCAGGTCCATGGTGGTTATTGCATATAGTTTTAACTTTTAAGATGGGTTTGAGGAACTCTAATGTATCCGGTTCCGAATATGATTGGGTTTGGATGAAGGATATTCTTTAATTTGTCTCATGTTAATACAAGATTGTCTGAATTGCATTTTTACATTTCAATCTGCCTAGTTTCTTCTCTAATTTTTTCTGCATTCCGTCTCTGTCTGACCCCTATTCTTCCAACCTTGAATTGAATGTTGCCTTTGTTACTTTTTGAGTTTTATATGAGTGGCAACTGGCAAGATGAACGTATAGTCGTTAGCGCTAGAATTTCCACTAACACAATACTGCAAACCTATATGTATGTGGTGGTGCAAGCTGTTTTAAGGAGCATATTTGAATTTTGCTATTTATGCTGAATTTGAGTCAAATTTTGAAATGTTGTATGTGGGTTAGATATTGAAACATTCACGATTCAGTAGTTCTGTATGTTATATAATGTGGGCAGCATGTCATTTTTTGCTGCTTCTTCCTCTGCAATGATTCTTTGGTTCTTCTAGGGTCCTACCTCAAAGGGAGAAATTTTACTAAGTAAATTTTTTTGTATAATACAATTATTGGTCTGTTTACTTTCATCTTAAGTGGTATACCTGTAGTGAGTCCATCTATAGTTCTGCATCACCTTCATGGGACGCTCTGATCCAAGTTCTTAAGAGATTCGTGTTTCTATTTTCTAGCCAAGAAAGGGTGCAACTTTAATTTGTTAACCATAGTCCATACAAGTTCCCTCCATAGATGTTGGTCTCTCGTACAATGAAAACATGGGTAAAAGGAGGGGATGTGGGTGTTGGGGCGGGGGGTGGTTAGCCACTTGCGGTGAGAGTCAATGCCAGAGATTTGAGGTCAACACTAGAAAACCGGAAAAATTTCCTTCCTTGCAACCAAAACCATTTATAAGGGCCTTAATTTGCCACCTTGTTTTTTACAGGGTCCTTTCTGACAAAAGTGTGTTTATAAAGGTCATATATGAGAAAGTTTCCTTAGAAAAAGATCTCTCATAGTTAACAAATTTAAAGGTAAACGATTTTCCCAACCCCTTCGGGATTCTCAAAAACTTAGATGTAATGATGAGGTGGAAAGCAGTAGTTTCGGAGTGATGGTAAATCATATCCAGAGTAACTGTTGTAGGTGTCAGAGGCTCAGAGCTGTGAGTTGTGTTTCCTTGCAAGTTTGGGGCACATGTATTAGTTTCGGGCACATGTATTAGTCATATTCAGTTTGAATAATTAAGTGGAGTTTCAGCCTCTCAGGTTCTCAGTATCATCTAAACCAGTTTAAATGAGGTCTTAATTCATTGCCTCCTAGATATTTTGTCCTTTGAATTTCCCAGGAAAATTCTTTTCTTCACACTTATTTTTTTTAAATGTCAAAGGTTGTTAGTCATACTTAGAAAACTTGAAGGGGTATGAATTTTAATTTGAAGGCATCAAGGGGTACCTGCAATTAAAACGATCTTAAGAACCAGTTTATTCAAAATAATTCAATAAGAAAGAAGCAAGACATTAGAGCATATACTGGAGAATCTTGGAATAGTTCGTTTCAGTTAGAAATGGATCTGAAAACAGTCTTCAGGCTATCTGACGTAAAACTTATTAAACTGTTTCAGGGTATAAGAACGGGGGAGTTAGATGCTGAAGGTCTTGAGCTGCTTCAGCAACGTCGTCGTTTCGAAGAGCCTTATGAGACGGTTGTGAGATTAATTCCAATAATATCAGATGTTTATCAAGTGATTATATGAGATTAAAAGGGTTGGGAGAAGAAACTATTGTTTATGAAGCCTTTGATAAAGGGAAGAAACCTTGGATTGATCAATTGAATCTTAGAATAGCACCCACTAAACTTCATTTGTAGCTAGGTACAAGGGTGATGCTACTAAAGAACTTAAGTCTGAAGGGCAGATTGGTGAATGGTACTACTGGTACAATTACAGGTTTTAAAAAGTCACGTAAGAGCGATGTTGCGAAGATATGTGAACATAAACTTTTGCCATTTTGTAATTTTAGTGTGTTAAATTTAAGTTAATAGAATTATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTCACGCATGCCAATGCACAACTTTGATCATTTATATCTTAAATTCTCTTTATGCAAAAATTATAAAAAGTTAATATTTTGAAAATACACGTTGAGACGAATCTAACAAGATCTCACATGACTATGTTTTATCTTATATAAAAAGCACTAAGAATAGTCAAAGTAGATTATATGAATAGTGGCAAAAGTCCAAACGTTGCGAGTATTAAAAGACGGAGGAAGTATAACATTTATAGTTCTTTGTTTTTTTCGAAGATAATAGATTGTTGTATATTATTTTTAAGTTATGAGACAGTGAGACGCACATTTGATATGATAGAAATGAAATTAGACCGTATATATCA

mRNA sequence

ATGACCACTCTATCCCCAAGATTGGCATCATCCCAATCATCAACTACTCATAAATATGTTATCACCGTCGAGGACCATAAAAAGTTCCAGACTTGCACTCCTTCCCACCCCTTTCTTCCTTCTATCTCCCACTACTTTCGGTTGGTTACACACTTACACCTTCCTTCTCATTCTCTCCACAATCTCAATTACTCAATCAAATTCATCAAACAAAAAAGAAAATGTCTCTCTCGAAAACTGCATCTGCATCTGATGCTTCCGTTCACTCCACTCTCTCTTCCAGATTTGTTCGGGCCTATCTACCCAGTTTTTGTTCATGAGCTGGGTATAAGAACGGGGGAGTTAGATGCTGAAGGTCTTGAGCTGCTTCAGCAACGTCGTCGTTTCGAAGAGCCTTATGAGACGGTTGTGAGATTAATTCCAATAATATCAGATGTTTATCAAGTGATTATATGAGATTAAAAGGGTTGGGAGAAGAAACTATTGTTTATGAAGCCTTTGATAAAGGGAAGAAACCTTGGATTGATCAATTGAATCTTAGAATAGCACCCACTAAACTTCATTTGTAGCTAGGTACAAGGGTGATGCTACTAAAGAACTTAAGTCTGAAGGGCAGATTGGTGAATGGTACTACTGGTACAATTACAGGTTTTAAAAAGTCACGTAAGAGCGATGTTGCGAAGATATGTGAACATAAACTTTTGCCATTTTGTAATTTTAGTGTGTTAAATTTAAGTTAATAGAATTATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTCACGCATGCCAATGCACAACTTTGATCATTTATATCTTAAATTCTCTTTATGCAAAAATTATAAAAAGTTAATATTTTGAAAATACACGTTGAGACGAATCTAACAAGATCTCACATGACTATGTTTTATCTTATATAAAAAGCACTAAGAATAGTCAAAGTAGATTATATGAATAGTGGCAAAAGTCCAAACGTTGCGAGTATTAAAAGACGGAGGAAGTATAACATTTATAGTTCTTTGTTTTTTTCGAAGATAATAGATTGTTGTATATTATTTTTAAGTTATGAGACAGTGAGACGCACATTTGATATGATAGAAATGAAATTAGACCGTATATATCA

Coding sequence (CDS)

ATGACCACTCTATCCCCAAGATTGGCATCATCCCAATCATCAACTACTCATAAATATGTTATCACCGTCGAGGACCATAAAAAGTTCCAGACTTGCACTCCTTCCCACCCCTTTCTTCCTTCTATCTCCCACTACTTTCGGTTGGTTACACACTTACACCTTCCTTCTCATTCTCTCCACAATCTCAATTACTCAATCAAATTCATCAAACAAAAAAGAAAATGTCTCTCTCGAAAACTGCATCTGCATCTGATGCTTCCGTTCACTCCACTCTCTCTTCCAGATTTGTTCGGGCCTATCTACCCAGTTTTTGTTCATGAGCTGGGTATAAGAACGGGGGAGTTAGATGCTGAAGGTCTTGAGCTGCTTCAGCAACGTCGTCGTTTCGAAGAGCCTTATGAGACGGTTGTGAGATTAATTCCAATAATATCAGATGTTTATCAAGTGATTATATGA

Protein sequence

MTTLSPRLASSQSSTTHKYVITVEDHKKFQTCTPSHPFLPSISHYFRLVTHLHLPSHSLHNLNYSIKFIKQKRKCLSRKLHLHLMLPFTPLSLPDLFGPIYPVFVHELGIRTGELDAEGLELLQQRRRFEEPYETVVRLIPIISDVYQVII
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07892.1Spo07892.1mRNA


Homology
[Close]
BLAST of Spo07892.1 vs. NCBI nr
Match: gi|902166639|gb|KNA07259.1| (hypothetical protein SOVF_173520 [Spinacia oleracea])

HSP 1 Score: 65.5 bits (158), Expect = 9.300e-8
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1 

		  

Query: 109 GIRTGELDAEGLELLQQRRRFEEPYETVVRLIPIISDVYQV 150
           GIRTGELDAEGLELLQQRR FEEP ETVVRL P I+DV +V
Sbjct: 268 GIRTGELDAEGLELLQQRRCFEEPDETVVRLFPRIADVNRV 308
[Close]
BLAST of Spo07892.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJ30_SPIOL (ATP-dependent DNA helicase OS=Spinacia oleracea GN=SOVF_173520 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.500e-8
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1 

		  

Query: 109 GIRTGELDAEGLELLQQRRRFEEPYETVVRLIPIISDVYQV 150
           GIRTGELDAEGLELLQQRR FEEP ETVVRL P I+DV +V
Sbjct: 268 GIRTGELDAEGLELLQQRRCFEEPDETVVRLFPRIADVNRV 308
The following BLAST results are available for this feature:
BLAST of Spo07892.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902166639|gb|KNA07259.1|9.3e-882.9hypothetical protein SOVF_1735... [more]
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BLAST of Spo07892.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QJ30_SPIOL6.5e-882.9ATP-dependent DNA helicase OS=... [more]
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BLAST of Spo07892.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07892.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009553 embryo sac development
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0006474 N-terminal protein amino acid acetylation
biological_process GO:0006468 protein phosphorylation
biological_process GO:0008612 peptidyl-lysine modification to peptidyl-hypusine
biological_process GO:0050983 obsolete deoxyhypusine biosynthetic process from spermidine
biological_process GO:0006816 calcium ion transport
biological_process GO:0052542 defense response by callose deposition
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0008152 metabolic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0010200 response to chitin
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0071805 potassium ion transmembrane transport
biological_process GO:0006486 protein glycosylation
biological_process GO:0009630 gravitropism
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005634 nucleus
cellular_component GO:0031248 protein acetyltransferase complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0004596 peptide alpha-N-acetyltransferase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0034038 deoxyhypusine synthase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008022 protein C-terminus binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0015079 potassium ion transmembrane transporter activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo177260.78Barchart | Table
Spo112850.75Barchart | Table
Spo027490.74Barchart | Table
Spo247360.74Barchart | Table
Spo007480.73Barchart | Table
Spo081140.73Barchart | Table
Spo019250.73Barchart | Table
Spo201870.73Barchart | Table
Spo213230.72Barchart | Table
Spo088500.72Barchart | Table
Spo008780.72Barchart | Table
Spo148260.72Barchart | Table
Spo076850.71Barchart | Table
Spo214940.71Barchart | Table
Spo168010.71Barchart | Table
Spo082450.71Barchart | Table
Spo005260.71Barchart | Table
Spo041790.70Barchart | Table
Spo266880.70Barchart | Table
Spo161860.70Barchart | Table
Spo149420.70Barchart | Table
Spo123760.70Barchart | Table
Spo034420.70Barchart | Table
Spo267890.70Barchart | Table
Spo238560.70Barchart | Table
Spo056210.70Barchart | Table
Spo243310.70Barchart | Table
Spo170240.69Barchart | Table
Spo057810.69Barchart | Table
Spo032850.69Barchart | Table
Spo209120.69Barchart | Table
Spo251070.69Barchart | Table
Spo089970.69Barchart | Table
Spo125430.68Barchart | Table
Spo054500.68Barchart | Table
Spo224360.68Barchart | Table
Spo091620.68Barchart | Table
Spo018400.68Barchart | Table
Spo096710.68Barchart | Table
Spo131710.68Barchart | Table
Spo253900.68Barchart | Table
Spo154470.68Barchart | Table
Spo246130.68Barchart | Table
Spo051950.68Barchart | Table
Spo246670.68Barchart | Table
Spo049850.68Barchart | Table
Spo256530.68Barchart | Table
Spo149110.68Barchart | Table
Spo149530.67Barchart | Table
Spo031990.67Barchart | Table
Spo179080.67Barchart | Table
Spo183140.67Barchart | Table
Spo198360.67Barchart | Table
Spo206950.67Barchart | Table
Spo228110.67Barchart | Table
Spo221120.67Barchart | Table
Spo259810.67Barchart | Table
Spo016280.67Barchart | Table
Spo059280.67Barchart | Table
Spo016860.67Barchart | Table
Spo109650.67Barchart | Table
Spo124230.67Barchart | Table
Spo132810.67Barchart | Table
Spo146300.67Barchart | Table
Spo240180.67Barchart | Table
Spo245490.67Barchart | Table
Spo162400.67Barchart | Table
Spo173860.66Barchart | Table
Spo008630.66Barchart | Table
Spo009270.66Barchart | Table
Spo018410.66Barchart | Table
Spo031070.66Barchart | Table
Spo043160.66Barchart | Table
Spo054440.66Barchart | Table
Spo059150.66Barchart | Table
Spo060220.66Barchart | Table
Spo092140.66Barchart | Table
Spo100310.66Barchart | Table
Spo129540.66Barchart | Table
Spo146670.66Barchart | Table
Spo172200.66Barchart | Table
Spo174470.66Barchart | Table
Spo185420.66Barchart | Table
Spo188750.66Barchart | Table
Spo223960.66Barchart | Table
Spo240400.66Barchart | Table
Spo259450.66Barchart | Table
Spo263520.66Barchart | Table
Spo269900.66Barchart | Table
Spo002470.65Barchart | Table
Spo048850.65Barchart | Table
Spo170320.65Barchart | Table
Spo155290.65Barchart | Table
Spo245910.65Barchart | Table
Spo142400.65Barchart | Table
Spo139050.65Barchart | Table
Spo126880.65Barchart | Table
Spo248860.65Barchart | Table
Spo126590.65Barchart | Table
Spo101860.65Barchart | Table
Spo078020.65Barchart | Table
Spo013440.65Barchart | Table
Spo054050.65Barchart | Table
Spo300130.65Barchart | Table
Spo212540.65Barchart | Table
Spo232190.65Barchart | Table
Spo233820.65Barchart | Table
Spo192170.65Barchart | Table