Spo07972 (gene)

Overview
NameSpo07972
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionU6 snRNA-associated Sm-like protein LSm4
LocationSuper_scaffold_124 : 436693 .. 444026 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCTGTGCCAGCTCTTCTTTAGCCAAAATTACACTCATAACCTTTTGCCGGTTAGTTCCGCAAGTTACAGAATAGAGAGACAGTCAATTGATCTCTGACTTCTCTCACACAATAAGAAACCGAAAGAAAGAAGCTACTGCTCTTTCCAGTTTCCCACTTCTCTCCCCCCATTTTCTTAAGTAATTGTTTAATCTTCTCCTTTCTTTCCCCAACTTTTTTTTCTAGGGTTTTCGCAATTCACTTCAGTTCATACGCTCCCTACAGCCCTACTTGTCGCGCCTTCAAATTTTGAATTAGGGTTTTGCAATTGTTCATCTTTATTTACAGTTTCTTAACTTTTGATTTTTATTGTTTCGTTGCAGTTCGTTGTGATCAATTAATCTAACCTAGCTGAAAAATGGTAATTTATTTCTATCATATTCTTTATATTGATTTTCTGATTCGTGATTTGTATGATTTTGTTTTTTAATTATGTTTTTTGCTTGAAATTTTCAGCTTCCTTTATCACTGTTGAAGACTGCTCAGGGCCACCCCATGGTAAGAACGCTTGATTTTCATTTTTTTTTCCTGTTAAATTTTAGGGTTTTGATCTTTAAATTGAATTGTGTGACATACCAAAAATTGAATTCATGGTTTTTTTTGTTTCTCTTATAGTTGGTGGAATTGAAGAATGGGGAAACTTACAATGGGCATTTGGTTAACTGTGATACATGGATGAACATTCATCTTCGTGAAGTCATCTGTACCTCTAAGGTGAATTATTGCTGCCTTTCAATTGTTTATTTTACCTTACTCCTACTCTTGTTTGTGATATTGTGAATATGTTTTCTTTTTGTTTATCTTCTGTTTCATTATGCTCGGCTTTTGCTTTGTGAATTGTGAATAATTTGTGGCCTTAATGATGGCATTTATGTGCAGGATGGAGATAGGTTTTGGAGAATGCCTGAGTGTTATATCCGGGGAAATACTATCAAGTATCTAAGAGTGCCAGATGAGGTAAGATTTTAATTTGGTCTCTACTTTCTCTCTTTCTTAGGGTGTATTATATAACACATTGTAAACTTGTTGAATCTTCCCCCTTCCCTTTGTGTTCCTTTCCCCGGGTGTTGGGGTTGGGGAAATGTGTTTTTGTTGTGTGTCCTATAAGATTTATATAGGAAGTGATACTCCGTATATGGAACACTGAATGGAAGTTTAATATTAAATCTCCTGATTGCTCAGTTCCTAGAATGTTGTGAAGGCTAAAACTGCACTATTGTTGCATTGGAGCATCACTATTGGTGGAAGTTGGGGACTTCGGGACTTGAAAAACATAAAAATCATAGAAGTACTATTTTTATCTGCAAAGATGAGACCCAACATTGATTTAAATGATGCAATTCTCATTTGAACGGTTGAACCTTAAGAAGTCACTTCCCAATTATTACCGTGGGACGACTGGGACCTGTTGTACATGTAGAGAAAATGGTTATGGTATGCATTTTCAGAAGAGATGCTTTCTCAAGGTAGACTTCATTTTTGGGGGTTGTCTCCCATTTTAGAATCTCATGGGATGGAAGTTTGGTTTCGAAAAAGTCCCTTATTCTTTGAGAGGCTCTCTTACTCCTAGCATGGGTGCTATTAGGAGTTAGGATATAGCTCAGCTGTTTATGCTTCCTGAAGTTATGATATCCTCCTTTCTCTCAGTTGAGGGCATGCAACTGCGGCCTAAGGTATTAAGTGTCGGCCATTAGATAGAGTGTCTTGATTACCTTATGTGCCTGATAAAGCTCCAGGGAAATGCTAGAGCTAACCGCTAAAATTATATGCCTATGTCTGCATAAACACGTACGATTCTATATTTATTTTTATGATGGCAACAGACTAATATTCTATGGTACAGTTTGATAATTTTCCGATAAACTGTAAGTTATGGCAATAGAACATTAGGATATCAGTAGGTTCTTCCTGCACATCTGTGCTTATCTTGGACACAGTTCTTGAAGGTCTTAGATATTGTCTGACTTGATAACTACATCTTCAACACTATGAACATTTGACGTCTTGATTCTTTCATTATCTGTGTAGGTTATAAAATATTTGGTTTTCAGACCCCAAGTAGATATCGATAGAAGAATCATACTTATCTTTCTCAACGCTAGGGCATTGGTCTCTCTCCTGTTTTGTAGTCTGGCTGCGTTGTAATCAGCTAATGTATCCTTGTTTCCTCATACTGCTGTACATAATAGCCACAATAACATCTCTTGTATAGCAGCCTGTAGGGTTCTACTATATCCTAAGTGACCAGCGCTTTACAAAGATGCTCCAGACAATATCTAGAGAGGGGTGTTTTGGGTTTCCGTCAACCTCAAAAATAGCCTTTTATATCCCTCAAGTCTCCACAGAAAGAAGCCAAGGTTATTAATTTCCAATTGAAGAAGAACAATAGTCAGTAGAGAATAAGTTATTATCTCATAACCATCTTCTTAGCATTTAAGCACTTAACTCACTAGGAGACTAGGAATCCATATATCTCCACTCACTCAAGTAATACCATGTGAACATTCATTTGTTCTAACATGCTTTTTGACAAACTCACAAACACCAATATCAATAAATGCGTTTCCTAGTCTCCCACCTCTTTTTCTAAAGGCATGCTTCGATTGGAAGTATTGAATTAATGGGTCATTTGAAACAAGATACAAAGAACGAACATGGTGGAGGTGGTGGTAGATGCTAGGTAGTATAGAGTTAGGACTTAAGAGGGGGGAAGGATGGTGGAATTATTACTTTAATTTTGGGGATAGTAGTTCCCCACCAACATCCTAGGGTTATATCTTACCCGCATAATGAAGGTCGTAAGCCTTGGTAGACCCCAATATTCATCTTTGTATTCCCCATCTCTTTTTTACCCTATTTCGTTTTAAAAGGCGCGAGGAGCACCGAAGCGCAAAGGGTGTCTGGAGCCTGGACGCAAGGCTTTCGTAGGCAAGGCACACTTGTTCGTATAAATTCTTAAAATATGTTCTTATTAATAAAAACATTGTTGCTATAAAATTAATTAATACTTGTACCAAATGATTAATTTTACATCAATACTAATGCTGAAACGAAATAAAGCAACCACTTTACTTGGTTATTTACTTGGTTGCTTACCCCAGAAATTGGGGGAAGAAAACATGTTGCACTACAACAATAATTCAATACTTCTATAACAATAATTCAACACATAAATAAAATATAGCCCAAGTGTATGATGGGCTGATGAAGAAAACAATGAAAAGGGGGATAGGTTAACATAGCTTAACTCCTATTTACTGACAAAAAGAAAGGAAATATTAAAAAATATGATTGCGGTAGGATAATATAAACAAGAGGAAAATAGGAAAAGGTAACTGGCAAAAGAAAGAAAATGTTCAAAAATGACCTTTTAATCTCCTTTGAATCGGGTAAAAGGATTGTGGTGGGCCTAGTCACTTTCACCTTATTCTTTCAAACATTTTACCCAATCTCTCTCCCCGTTGGAAAACAGGTCCTCCCTCCGTATTAATTAAAGGATGCACTTTCCTTAATCAATCGTATTTTATTAAATGATGCACTTTTCATTTTTTGTACGTTTTCCTATTATTTTATCATTTTCTCCTTATCTCATGGGCCCACTCTCACGTATTTGATTAGTTATTCTGTACCTTTTACATTCTTTGAATACTAAATGTTTATTCCCCGTTTATTCTACTTTATCTTGTTTAATAAATTCAACTCACCATCCTTGAACTTTGTGCCAGTCAAAATGCACCATTTAATAAAATATTAAGGGAGTAGTAGTGCAGTACACCACATATTTGGTGACAACTTTGGTATCGATTTTGGCACGATAGTAATATTTGATTGTAAATCGAATAATTAGAATCGAGAACGGTTGATGCAATTGGCACGGAGGAAGAAAAGTGGGGAAAATAAAGGCGTGGCACGCATGAGACATTCTTATTTTATTTTACGGGGAAAAACAATAATATCACTAAAAATATGCATTATCACAGATTTAGATATAATACATAAGTGTTATAATCAAAATAATATTTATTCTCTCAGGTAGAGTGCAACTTGTACACGTCGCTTCTAGTTTGACGCAATCAATGATTTTTCGATGTCTTCGCATCTTTTCAAGTAGAGCCTTTGCAATCTGCCCACGAATTATTCCAATCAATGAGCCGATGATAAACTCTAAACTCATACAAAGATAGATCACCTTCCAATTGTTGAAACCCTAAAAATCAAATTCCAATTCATGGAAAAGAAACTCAAGAACCTAAAAAAATCTAGGAAAAGCCGAAGAATAAATTGGGAACAAACCTAAAAATCGGGAACAAACCATTTGAAAAGAAAACAAGAATGAAATTAGACTATTTCCGGCCTAAACGACCAAGGAAAAACCGAAATCTTAAAAGATGAGGAGAAGAGAGAGGAAGAAAAAGGAGAGAACCTGAAACCCTTTGACGTATGAACATAATGTAGAGTCATTTGACTAGAAGTCTCTTTTTTTCCTTCCGATTTTCGTATATTGCAGGTGTTAGGTTTTCAAAGTAAAAATGGTAAAGACCTCTATTTTCTCACAGTCGGTCAAACCATGTTACAAATGACCCCTCAACAATGAATAAAAAGCCACCCTAACAAAATATAAAGTCGCATGTGAACAAAAATTAGTGGCATGACTCACCTCACAACAATATATCACGGCTCGCCAAGAAACATGTACAAGCAGCGGGGTATTACGTCTTACCATTGTTGATGATTTTTTTTTTGGGTTAAGTTGATGATTTTTTTATATGTAGTTTTGACCTCCTATGTTTATTTCGGTCTCCGTTGCAATATGCCTTGTTCTTATTGAGTTGAGGTTAGTAGCAGTTCATCTTTCTGTACATATGTTACTACTTTTTCCCCGAAAGCAATTATATATTTATTCGACCAGGAATTATAACAAGGGGAAAGGGATACCGTATAAAATGTTTGGTCAACAATATAATGTTTGTTTTGAAGAATAATAACACAATAATTTCAAGTTAGTCCTGCTTGCCTAGTTCACTACCAAAACCTTCTTTTCTCCTCTATCTTCCTCCTTTTCCTGGCCGCTGCAAGCTAGCTGCTACCTTCCTCAATCTAAAGGAAATTTACAACTTGCAGTCATTGAATTGGGGAAATCCCCTAAACACTAGGGTCCTTCACTGTTGAGTAACTGTGTTGTCTCTAATGTATACTCCAACGAAGTGGTTACTCCCGCTTCTATGGATCGCCGGAGTTGAGGTTATCGACAGAAAAAAGAGGAGAGGCAATTTGCTTCAACGTTAAGGCTGAGTTGAGATCTGGAGAAGACGTTGCCTGACGTGGGAAGGGGAGAACCAGACGTCTATCACAAGGATGTAGTAGAGGGGTGGGGTATTTTTTTGTTTTTGTTATTTTAATATATTTGTGTAGATTCTTTCAACTATCCTTTCTATGTTGAGTGTAACTCTGTGTATGTGCTATAGTTGTGCTGTTTTGGGTTTGTATGAGTGAGCTTTAGATGTCTAAAACTCTAAAGTAAGGAATTTAAATACCCAGTTGTGGGGAGAGGTATGGGGAATCAGCAAAATTGCTTTTGGGTTGAACTGATTATGGAAAGGTAGGGAAAGGGAATGATATATATTGGAATGTAGAGGAGACAGAATTCCGTGTCTTGAGAACCTGTCATCAGAAAACTCTTGTACTTCCTCCGTTCCAAAAATATTAAAACTTTTGGACTTTCACGTTATTCACACTCTCATTGACCACCTATTGCGATTTATACGCAAGGGAAACTACTCATGTGAGATGATAGATTAGTCTCGCTATATACTTCAAAATATCTACTTTTAATTTTTTTTACTTATAGGTAACTATAGATACTAATGGCGCCTCTAAACGGGTGACATAGTGTCATGATTACTTTTGCTTCCTGGTCGATTTATTCAATAGATCATTTTTATTCAGAACATCAAACATTACCCCTTGTAGAATCTTGTTTTCTATGGGTAGGTATCTAATTTGCTTGTGGTTCTTTTGCTTGTAGGTCATTGATAAGGTCCAGGAGGAGAAGAGCCGCACAGGTATTATTCTTTAGAATAGCATTATGATAGGCTACACTTTTTTATTGTTATTATTTTGTTGCGAAATTGAATTTTTACATAATGTAGAAGAATCGTCATTTCTTTCGTTTCTCATTTCATGCATTTGCTCCTTTCAGACAGGAAGCCTCCTGGTGTAGGGCGTGGGAGAGGAAGAGGTAGAGAAGATGGTCCTGGGCGGCAGATAAAAGGCGTTGGACGCGGTATGGATGATGGAGGTAAAGGTGTTGGAGGCAGAGGTAGGGGTGGTCCTGGTGGGAAGCCTGGTGGGAAAGGTACAGTTTTTTTCCAATTAATTCTTTTATTTAGAATATAGTTTCCAGTCGGAAGAAATTTACACCAGTTGGACAAGTGGTTACCATGTAAATTGAGTTTGAGCATAACACTTGGATATCAAATGTCTAATTTACACCATCCTTGTGTTTTGTAGCAGTTGGAGGCCGAGGTCGATGAAGTGCATGCAGAATTGCAGATAGCGTTGAGCCGAGGACGGTACTTGCTGCGGTGGTGTTTTGCTGCTTTTGATGCATTTGCCACCGTTTGGATTTTTCATTTTGCCAAAAACAGGACAATCAGTGTGAGTTCGCGGGGTGATTAGAAAAAAGCAAGCTTATGGATTGGATTTTAGTTACCTAGTAAGATAATGTAATGTATGTTTTGGTAGGTTGTAAAACAGTTGAAGTTGTCCCTTGATTCTATTCGCGGGTGTGTTTTCATTGTGTTTCTTACTTGCTGCTCAAACTAATCATTGTGAAGGCCTAAAGCTAGTGATATATTTACAGAACTTGTTGATGTTTTATTCTAGTCAAAACCTACCAAATAATAGGGGATGTTGGTACACGAGCATTGCCTTACCAGAGTACTAATCTTCAGCCTACGCTGAACATCATCATAAGTCCATCATAAACATCAACTATGTTTGGTAGTAGCCACCAAAAACCAAAGAACTTGCCTATACCAACGTTGTCAAAAGGGAAAAGAAACATCCCTATAACAAAAGCCATTCCCAAAAGGGAAAAGAAACATCCCTATAACAAAAGCCATTCCCAAAAGGGAAAAGAAACATCCCTATAACAAAAGCCATTCCCACATTTTTTTTTTCTTGTCCACTTTCAGCACCTTATTATCATTACCTATAACAAAGTTACTCTATACTCTCCCTGTTTTTTTAGGAGTCACATGTTGACCGATACAAATATTAAGGAAATATAGTT

mRNA sequence

TCCCTGTGCCAGCTCTTCTTTAGCCAAAATTACACTCATAACCTTTTGCCGGTTAGTTCCGCAAGTTACAGAATAGAGAGACAGTCAATTGATCTCTGACTTCTCTCACACAATAAGAAACCGAAAGAAAGAAGCTACTGCTCTTTCCAGTTTCCCACTTCTCTCCCCCCATTTTCTTAATTCGTTGTGATCAATTAATCTAACCTAGCTGAAAAATGCTTCCTTTATCACTGTTGAAGACTGCTCAGGGCCACCCCATGTTGGTGGAATTGAAGAATGGGGAAACTTACAATGGGCATTTGGTTAACTGTGATACATGGATGAACATTCATCTTCGTGAAGTCATCTGTACCTCTAAGGATGGAGATAGGTTTTGGAGAATGCCTGAGTGTTATATCCGGGGAAATACTATCAAGTATCTAAGAGTGCCAGATGAGGTCATTGATAAGGTCCAGGAGGAGAAGAGCCGCACAGACAGGAAGCCTCCTGGTGTAGGGCGTGGGAGAGGAAGAGGTAGAGAAGATGGTCCTGGGCGGCAGATAAAAGGCGTTGGACGCGGTATGGATGATGGAGGTAAAGGTGTTGGAGGCAGAGGTAGGGGTGGTCCTGGTGGGAAGCCTGGTGGGAAAGTTGGAGGCCGAGGTCGATGAAGTGCATGCAGAATTGCAGATAGCGTTGAGCCGAGGACGGTACTTGCTGCGGTGGTGTTTTGCTGCTTTTGATGCATTTGCCACCGTTTGGATTTTTCATTTTGCCAAAAACAGGACAATCAGTGTGAGTTCGCGGGGTGATTAGAAAAAAGCAAGCTTATGGATTGGATTTTAGTTACCTAGTAAGATAATGTAATGTATGTTTTGGTAGGTTGTAAAACAGTTGAAGTTGTCCCTTGATTCTATTCGCGGGTGTGTTTTCATTGTGTTTCTTACTTGCTGCTCAAACTAATCATTGTGAAGGCCTAAAGCTAGTGATATATTTACAGAACTTGTTGATGTTTTATTCTAGTCAAAACCTACCAAATAATAGGGGATGTTGGTACACGAGCATTGCCTTACCAGAGTACTAATCTTCAGCCTACGCTGAACATCATCATAAGTCCATCATAAACATCAACTATGTTTGGTAGTAGCCACCAAAAACCAAAGAACTTGCCTATACCAACGTTGTCAAAAGGGAAAAGAAACATCCCTATAACAAAAGCCATTCCCAAAAGGGAAAAGAAACATCCCTATAACAAAAGCCATTCCCAAAAGGGAAAAGAAACATCCCTATAACAAAAGCCATTCCCACATTTTTTTTTTCTTGTCCACTTTCAGCACCTTATTATCATTACCTATAACAAAGTTACTCTATACTCTCCCTGTTTTTTTAGGAGTCACATGTTGACCGATACAAATATTAAGGAAATATAGTT

Coding sequence (CDS)

ATGCTTCCTTTATCACTGTTGAAGACTGCTCAGGGCCACCCCATGTTGGTGGAATTGAAGAATGGGGAAACTTACAATGGGCATTTGGTTAACTGTGATACATGGATGAACATTCATCTTCGTGAAGTCATCTGTACCTCTAAGGATGGAGATAGGTTTTGGAGAATGCCTGAGTGTTATATCCGGGGAAATACTATCAAGTATCTAAGAGTGCCAGATGAGGTCATTGATAAGGTCCAGGAGGAGAAGAGCCGCACAGACAGGAAGCCTCCTGGTGTAGGGCGTGGGAGAGGAAGAGGTAGAGAAGATGGTCCTGGGCGGCAGATAAAAGGCGTTGGACGCGGTATGGATGATGGAGGTAAAGGTGTTGGAGGCAGAGGTAGGGGTGGTCCTGGTGGGAAGCCTGGTGGGAAAGTTGGAGGCCGAGGTCGATGA

Protein sequence

MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGGKGVGGRGRGGPGGKPGGKVGGRGR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07972.1Spo07972.1mRNA


Homology
[Close]
BLAST of Spo07972.1 vs. NCBI nr
Match: gi|902226914|gb|KNA20524.1| (hypothetical protein SOVF_051390 isoform A [Spinacia oleracea])

HSP 1 Score: 287.0 bits (733), Expect = 1.900e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120

Query: 121 KGVGGRGRGGPGGKPGGKVGGRGR 145
           KGVGGRGRGGPGGKPGGKVGGRGR
Sbjct: 121 KGVGGRGRGGPGGKPGGKVGGRGR 144
[Close]
BLAST of Spo07972.1 vs. NCBI nr
Match: gi|902226915|gb|KNA20525.1| (hypothetical protein SOVF_051390 isoform B [Spinacia oleracea])

HSP 1 Score: 282.3 bits (721), Expect = 4.600e-73
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120

Query: 121 KGVGGRGRGGPGGKPGGK-VGGRGR 145
           KGVGGRGRGGPGGKPGGK VGGRGR
Sbjct: 121 KGVGGRGRGGPGGKPGGKAVGGRGR 145
[Close]
BLAST of Spo07972.1 vs. NCBI nr
Match: gi|731346590|ref|XP_010684532.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 273.5 bits (698), Expect = 2.100e-70
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQ KG+GRG+DDGG
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQTKGIGRGIDDGG 120

Query: 121 KGVGGRGRGGPGGKPGGKV-GGRGR 145
           +G GGRGR GPGGKPGGKV GGRGR
Sbjct: 121 RGAGGRGRSGPGGKPGGKVPGGRGR 145
[Close]
BLAST of Spo07972.1 vs. NCBI nr
Match: gi|571480722|ref|XP_006588395.1| (PREDICTED: uncharacterized protein LOC100500134 isoform X1 [Glycine max])

HSP 1 Score: 256.5 bits (654), Expect = 2.700e-65
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPPGVGRGRGRGREDGP-GRQIKGVGRGMDD 120
           IRGNTIKYLRVPDEVIDKVQEE KSRTDRKPPGVGRGRGRGREDGP GRQ KG+GRG+D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 121 GG-KGVGGRGRGGPGGKPGG-KVGGRGR 145
           GG KG GGRGRGGPGGKPGG + GGRGR
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRGGGRGR 148
[Close]
BLAST of Spo07972.1 vs. NCBI nr
Match: gi|470108982|ref|XP_004290781.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Fragaria vesca subsp. vesca])

HSP 1 Score: 251.9 bits (642), Expect = 6.700e-64
Identity = 133/147 (90.48%), Postives = 136/147 (92.52%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGR-GREDGP-GRQIKGVGRGMDD 120
           IRGNTIKYLRVPDEVIDKVQEE  RTDRKPPGVGRGRGR GRED P GRQ KG+GRG+DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKRTDRKPPGVGRGRGRGGREDAPGGRQPKGIGRGLDD 120

Query: 121 GGKGV-GGRGRGGPGGKPGGKVGGRGR 145
           G KG  GGRGRGGPGGK GG+ GGRGR
Sbjct: 121 GAKGAGGGRGRGGPGGKAGGRGGGRGR 147
[Close]
BLAST of Spo07972.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNM4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_051390 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.300e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120

Query: 121 KGVGGRGRGGPGGKPGGKVGGRGR 145
           KGVGGRGRGGPGGKPGGKVGGRGR
Sbjct: 121 KGVGGRGRGGPGGKPGGKVGGRGR 144
[Close]
BLAST of Spo07972.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLZ5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_051390 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.200e-73
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120

Query: 121 KGVGGRGRGGPGGKPGGK-VGGRGR 145
           KGVGGRGRGGPGGKPGGK VGGRGR
Sbjct: 121 KGVGGRGRGGPGGKPGGKAVGGRGR 145
[Close]
BLAST of Spo07972.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BWV8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g164860 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.500e-70
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQ KG+GRG+DDGG
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQTKGIGRGIDDGG 120

Query: 121 KGVGGRGRGGPGGKPGGKV-GGRGR 145
           +G GGRGR GPGGKPGGKV GGRGR
Sbjct: 121 RGAGGRGRSGPGGKPGGKVPGGRGR 145
[Close]
BLAST of Spo07972.1 vs. UniProtKB/TrEMBL
Match: A0A0B2P7T6_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010957 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.900e-65
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPPGVGRGRGRGREDGP-GRQIKGVGRGMDD 120
           IRGNTIKYLRVPDEVIDKVQEE KSRTDRKPPGVGRGRGRGREDGP GRQ KG+GRG+D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 121 GG-KGVGGRGRGGPGGKPGG-KVGGRGR 145
           GG KG GGRGRGGPGGKPGG + GGRGR
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRGGGRGR 148
[Close]
BLAST of Spo07972.1 vs. UniProtKB/TrEMBL
Match: A0A0R4J488_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G019100 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.900e-65
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPPGVGRGRGRGREDGP-GRQIKGVGRGMDD 120
           IRGNTIKYLRVPDEVIDKVQEE KSRTDRKPPGVGRGRGRGREDGP GRQ KG+GRG+D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 121 GG-KGVGGRGRGGPGGKPGG-KVGGRGR 145
           GG KG GGRGRGGPGGKPGG + GGRGR
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRGGGRGR 148
[Close]
BLAST of Spo07972.1 vs. ExPASy Swiss-Prot
Match: LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.500e-60
Identity = 125/147 (85.03%), Postives = 129/147 (87.76%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPPGVGRGRGRGRED--GPGRQIKGVGRGMD 120
           +RGNTIKYLRVPDEVIDKVQEE KSRTDRKPPGVGR R RG  D    GRQ KG+GRGMD
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 121 DGGKGVGGRGRGGPGGKPGGKVGGRGR 145
           DG  G  GRG+GGP  K GG+ GGRGR
Sbjct: 121 DG--GAKGRGKGGPSAKSGGRGGGRGR 145
[Close]
BLAST of Spo07972.1 vs. ExPASy Swiss-Prot
Match: LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.500e-59
Identity = 125/147 (85.03%), Postives = 131/147 (89.12%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEE--KSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDD 120
           IRGNTIKYLRVPDEVIDKVQEE  KSR+DR+PPGVGRGRGRG + G     +G+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRG-DIGTKPGGRGIGRGQDD 120

Query: 121 GG-KGVGGRGRGGPGGKPGGKVGGRGR 145
           GG KG GGRGRGG GGK G K GGRGR
Sbjct: 121 GGSKGGGGRGRGGIGGKGGIKGGGRGR 146
[Close]
BLAST of Spo07972.1 vs. ExPASy Swiss-Prot
Match: LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.300e-55
Identity = 121/148 (81.76%), Postives = 127/148 (85.81%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPPGVGRGRGRGREDGPG-RQIKGVGRG--M 120
           IRGNTIKYLRVPDEVIDKVQEE KSR DRKPPGVGRGRGRGRE+G G RQ++G GR   M
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 121 DDGGKGVGGRGRGGPGGKPGGKVGGRGR 145
                 V  RGRG   GK GG+ GGRGR
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGR-GGRGR 147
[Close]
BLAST of Spo07972.1 vs. ExPASy Swiss-Prot
Match: LSM4_ARATH (Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.200e-54
Identity = 116/145 (80.00%), Postives = 118/145 (81.38%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRGNTIKYLRVPDEVIDKVQEEK+RTDRKPPGVGRGRGRG +DG                
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGVDDG---------------- 120

Query: 121 KGVGGRGRGGPGGKPGGKVG-GRGR 145
            G  GRGRG   GK GG  G GRGR
Sbjct: 121 -GARGRGRGTSMGKMGGNRGAGRGR 128
[Close]
BLAST of Spo07972.1 vs. ExPASy Swiss-Prot
Match: LSM4_MOUSE (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.700e-41
Identity = 98/149 (65.77%), Postives = 111/149 (74.50%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRG+TIKYLR+PDE+ID V+EE            +GRGRG   GP +Q +  GRGM   G
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREE----------AAKGRGRG---GP-QQKQQKGRGMGGAG 120

Query: 121 KGV-GGRGRGG--------PGGKPGGKVG 141
           +GV GGRGRGG        P  KPG + G
Sbjct: 121 RGVFGGRGRGGIPGAGRGQPEKKPGRQAG 135
[Close]
BLAST of Spo07972.1 vs. TAIR (Arabidopsis)
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 213.0 bits (541), Expect = 1.200e-55
Identity = 116/145 (80.00%), Postives = 118/145 (81.38%), Query Frame = 1 

		  

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG 120
           IRGNTIKYLRVPDEVIDKVQEEK+RTDRKPPGVGRGRGRG +DG                
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGVDDG---------------- 120

Query: 121 KGVGGRGRGGPGGKPGGKVG-GRGR 145
            G  GRGRG   GK GG  G GRGR
Sbjct: 121 -GARGRGRGTSMGKMGGNRGAGRGR 128
[Close]
BLAST of Spo07972.1 vs. TAIR (Arabidopsis)
Match: AT1G76300.1 (snRNP core protein SMD3)

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-11
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 1 

		  

Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGGK 121
           RG+ +++L +PD + +    +  R   K   +G GRGR    G   + KG GRG   GG+
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGR----GAAMRAKGTGRG-TGGGR 121

Query: 122 G 123
           G
Sbjct: 127 G 121
[Close]
BLAST of Spo07972.1 vs. TAIR (Arabidopsis)
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 64.7 bits (156), Expect = 5.300e-11
Identity = 43/125 (34.40%), Postives = 70/125 (56.00%), Query Frame = 1 

		  

Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPDEV----IDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMD 121
           RG+ ++++ +PD +    + K  + + +      GVGRGRG  R    G+   G GRG  
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRGAMR----GKPAAGPGRG-- 124

Query: 122 DGGKG 123
            GG+G
Sbjct: 127 TGGRG 124
[Close]
BLAST of Spo07972.1 vs. TAIR (Arabidopsis)
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 47.4 bits (111), Expect = 8.800e-6
Identity = 36/109 (33.03%), Postives = 50/109 (45.87%), Query Frame = 1 

		  

Query: 17  VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 76
           +ELKNG   +G + +           D  MN HL+ V  T K G     +    +RGN I
Sbjct: 17  IELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 76

Query: 77  KYLRVPD---------EVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPG 107
           +Y  +PD         E   +++ +K    + P G GRGRGRGR  G G
Sbjct: 77  RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 124
The following BLAST results are available for this feature:
BLAST of Spo07972.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902226914|gb|KNA20524.1|1.9e-74100.hypothetical protein SOVF_0513... [more]
gi|902226915|gb|KNA20525.1|4.6e-7399.3hypothetical protein SOVF_0513... [more]
gi|731346590|ref|XP_010684532.1|2.1e-7095.1PREDICTED: probable U6 snRNA-a... [more]
gi|571480722|ref|XP_006588395.1|2.7e-6592.5PREDICTED: uncharacterized pro... [more]
gi|470108982|ref|XP_004290781.1|6.7e-6490.4PREDICTED: probable U6 snRNA-a... [more]
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BLAST of Spo07972.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RNM4_SPIOL1.3e-74100.Uncharacterized protein OS=Spi... [more]
A0A0K9RLZ5_SPIOL3.2e-7399.3Uncharacterized protein OS=Spi... [more]
A0A0J8BWV8_BETVU1.5e-7095.1Uncharacterized protein OS=Bet... [more]
A0A0B2P7T6_GLYSO1.9e-6592.5Putative U6 snRNA-associated S... [more]
A0A0R4J488_SOYBN1.9e-6592.5Uncharacterized protein OS=Gly... [more]
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BLAST of Spo07972.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM4_TOBAC1.5e-6085.0Probable U6 snRNA-associated S... [more]
LSM4_ORYSJ6.5e-5985.0Probable U6 snRNA-associated S... [more]
LSM4_FAGSY4.3e-5581.7Probable U6 snRNA-associated S... [more]
LSM4_ARATH2.2e-5480.0Sm-like protein LSM4 OS=Arabid... [more]
LSM4_MOUSE2.7e-4165.7U6 snRNA-associated Sm-like pr... [more]
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BLAST of Spo07972.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT5G27720.11.2e-5580.0Small nuclear ribonucleoprotei... [more]
AT1G76300.12.4e-1133.8snRNP core protein SMD3[more]
AT1G20580.15.3e-1134.4Small nuclear ribonucleoprotei... [more]
AT4G02840.28.8e-633.0Small nuclear ribonucleoprotei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..70
score: 5.7
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..71
score: 1.4
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 3..130
score: 3.78
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..144
score: 2.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..73
score: 8.7
NoneNo IPR availablePANTHERPTHR23338:SF24SUBFAMILY NOT NAMEDcoord: 1..144
score: 2.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016043 cellular component organization
biological_process GO:0009987 cellular process
biological_process GO:0006396 RNA processing
cellular_component GO:0005634 nucleus
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo149420.68Barchart | Table
Spo151740.68Barchart | Table
Spo252300.68Barchart | Table
Spo027490.67Barchart | Table
Spo005360.66Barchart | Table
Spo267890.66Barchart | Table