Spo08065 (gene)

Overview
NameSpo08065
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSingle-stranded DNA-binding protein
Locationchr5 : 13691841 .. 13695871 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTAGGGTTTTACTCAGGTTTAAGCCCCAAAACCTTGCAATTCTCTCTCCCTCTCTCTGATCAAACTCTCCATCAATGGCTACCTCAAACTCAATGGCAGCAATTTCAAGAAGACTATATCGAAATCTCATCTCAAATAAAAAACCCTCTTGTTATCTTAATCACACTACCAATTCCTTCTTCTCCACTGGACCTTCAATTCCAGACGACAACTTGGATAAATTGCTAGACGAGTTACCAACTCTCGACTCGGACACTGAATCGACCGAGTTACCCCCTGATAACTCCACCGCTTCCTCCTCTGAGTTCTCCTCAACTTCCCCCAAATCGGCAGGACACCGTGCCTACAATCAGACGGTCCTTGAAGGTGGCTTAGACATCGGCATTTACAAGGTTCGTACATTTTAGTAAACAATTTATGGTCATGTACAAGTACTGGTCTCGAGTCGAGCCTTATTGGATATATGCTGTTTGAACATAGTAATTTAATGGAAATGGGTTGTTGTTGTTGAGATATTAGCAATTGTTTGATTGTTAATTGTGGAGATCTAAGTTGCTGGATTTGTCGAAAACTGCAAATATATGTGTGAGAATGTAAGATTGGAGGTTTTATGTGTGTTAATTGGATGATTAATTGAGTGCCAATTTCTGGAATTAGGCTATATTGGTTGGACAAGTAGGGCAGAGTCCTATGCAGAAGAGGCTGAAGAATGGGAAATTGATGACGCTTACTACTGTAGGAACGGGTGGGATTAGGAATGAGCGGATTCCATTTCCTAATGAAGAGCCGAGGGAGTATGCTGATCGTTGTAATGTTCAATGGCATCGGGTTGCTATCTATCCAGAACACTTGGGTGATGTTGTAATGAAGAATGCTCCACCTGGGTAACCTCCTTTTCTTGATCTCTATATCCTATTGTAGTGTTTACTAGTCATTTTGTCTGCTTGGTTGTGAATGATGAAACTTCTTAGTTCTTTTCTTCGGATAAGTTGTGTGTTAAGTCTTTAGCATGGTTGAACTTTTTTTGGGTTTTGCTGGTATTTTATGAGGGAGCGGAGTAAAGAATTTAGCTTTACGGTCATCAAACATTGAAATGAACTTCAATGTTTGTTTTCGAATGAGAACCAATGTGTGCTTAAATGAGAGTGTTCTAGATTTTTCCGGCATTCAACTACGGAGTATAAGAAATCAATTGTTGATTGCAGTGCAACATTTGTTCGTGTGGCTTTATCTAGCCTGAAAGTGTCCTGTAAAGGGGATTCATTCTGAGGTGCCAACATTTCATCCAAGCGTATTAAACCTTGAATTTCTAAATATATTAGAGTAAGATGTATAGAACTGCTAACCATACATAACATATGAAGAGTATATTCATCTTTTAATGCCCATACAGACTCGTTATTGAGTAGATCCTTAACCAATTAAAATAAATTACTTTCTACAACAAATTCGTTATGTCCTAACAAGTAAAAACAGGCATGAAGAATACCAAATTTGTAATCAACATTAAAATTATCAATTCTTGTCAACTATCTTGTTATCCTTGTCCATGTAATTATATTTTCCCTGTTACAAATTTCATTCTGCTGCACATCATATCAAAGCAGAGAAAGAAGGTTGCAAGAAGGTTTCATATAAGAACAATCATTCTGGTCCATCAGCCCCATCTTTGTGCTAATGATATGTATTCTTTATATCCATCCGCCTGTATAAGACCATTAAGGCATCAATTGGTACAAGCGTGCAACTAAATGAGTCATGGAGCGCATTGTCCATTTTGTCGGGCAACTCATCGTTTTGTGGAAGATTTTGTCCTTTGAAAGAATTACATCTATGTTAGTTTTCTGTGGAGTATTGTAAAGATGACATTAAGTCTAAGTCTTACCATTACAATTATCATTACCTCAGTGGGTATGTCAGATGATAATATGATATACACATTTCTTTTGATGGGCATATATTCACATTCTTTTTTTTTTGTCAATTAGATATACATACTCTTAACTCTATAATAAGACGAGTTTCTCTTTGGATCCTTGGTTTCTGAGGAGATTCACTGTCCCAATCCACAACCAAAAGAACGGTTAGGATCTTAGAATAGGTCGATAATACTTTTGATTTAGTCAGTTAGTCCACTACTATGCTTCCTGGACACAACAAAATTGCTCAGTACTCATCTTGTTACAACAAGGCATAACACCATTATGGGTATGAAATCTGGATCAGAATTTTCATTCAGTTAGACACGGATGGTAGGCCCTGTATGTCTGAATTAGCCACAAATTGAGGGGAGAAACCGGGAAGGAGGGGAAGAAAATTAGAGGGAGAGATCTGATTTGGATGCTGAGAATAGGGGTAGAGGAGACATCGATGGCCTGTTGGTTTTTCTGTGCTAGTAGTTGATGATGAGAGAGGAGGAAGATGACAGCCGAGGCCAATAGATGCTCAATTCATTTTTGCTCAGTTTCTCTCTTTTGTGCCATTCTTTTCTCTTTCGTCTTAACTCTTCCTGTTGCTTACATAGTTACACCCTAGAGTTTGGTATGTGTGACTAATATCTCTCTCTACACAAATACTCACATAGTCACATACACATACAATATGCTACCATATGTCTGAACTCTGAACAGAGTCCCCATGTCCTAAATTTTTTGTTACTGGACCCTTGGACACTTACCCATATCCAACACCCATGCCTAATGTTGAACAGATGCTTTGTTCCTTGACAAAGTTTGCTTCCCTATCTGAACTGGGTGGATTACTGTCTATTCTGTAATTATGAATTTGTGATGGCCTTTGGAGCTGCGTTTAGAATGTATTTGCTACTGTTGTATACTTCGTATATGTTTTATAATTTAGTGATATCCATGTTGCCAGTTTACTTTCTAGTGGTTATCATTATATCAACAATCATTAGAAGTATGTTTTTTTTTTTTTGAAAAAAATTTGGTTGTTGCTTTGACCTGTGGAAATCTTATCTTGTGATATTTTCTTACAAATAATATGCAATGCTTGGTTCTTGATGCAGTACAATACTTTATCTGGAGGGAAATCTGGAGACAAAAATCTTTACTGATCAAAATACAGGTCTTGTTAAGCGAATGAGGGAAATCGCGATTCGGCGAAATGGTATGTTTTTACTAGAATTACTACTATTACATTTATGATAATGACATAATATAAAAAAATTAGAGTGCTTCTGTTGTTGATATTTATCAAAATTTAATGTTCTAAACGTAACGTATTGGATCACTTGCCCCTGCATTTTGTTGGTCGTCTCTGAATATGATTGCCTGGCACTGAATGTATCCTGCAGAAGAGGCAGTGCTATGTTGATGCGTGTGATGTGTAGTGTGGCCGTGTGGGTGTGCTTATAAGTATATATTTGTATTATTTGGTTATTGCAGGGCGTGTTGTGTTTTTGGGAAATGGTGGTGATTTCAGTCAGCCATCTGCACATGAGCTCAAAGGTGTTGGCTATTTCTGAATCCCGAAGGACATCACTGTTCATTTCTCTCAGGCACATGATTCATGATTGGATCAGTCTTCAAGTCGACCTCAAAGGACCAGTGCTCATGTTTTCAAGCATCAATATGTAGGCCGCAAATCGGATTGCCAATATGCCATTTACAATAATCTAACAGAGACAGAGAGTTGTGCCTTAGAAACGTGAAGGATAGTAGCTTGTGTACAGCCTGTTTTCCGATTGCAAGTTCATTGATGGTACTTCCCTAACAAAGAATTACAGTAGATTTTGTTTTTTTGGTTGAGTTGGAAAGCACAAGTAGAGTTTGAAGTTGCAAACGTTGGTGTTGTTACTGCTATCATATGAGATATGACGGAAAATAAGTTGTTGAATAGACCTAAACATTTTTTAAAATAGGAAAGCTGACTGCCAAAAGGCCCAAAAGGCATTAACTGGAGTCGGGCTCTTTGGTCGGAAAATATTAAAATGTTTATATAAAAATTACTAAATGAATGATTTTGCTATGGCTACATTTAAATTGTAGCCATGGTAACTATCTCCGAT

mRNA sequence

CCTAGGGTTTTACTCAGGTTTAAGCCCCAAAACCTTGCAATTCTCTCTCCCTCTCTCTGATCAAACTCTCCATCAATGGCTACCTCAAACTCAATGGCAGCAATTTCAAGAAGACTATATCGAAATCTCATCTCAAATAAAAAACCCTCTTGTTATCTTAATCACACTACCAATTCCTTCTTCTCCACTGGACCTTCAATTCCAGACGACAACTTGGATAAATTGCTAGACGAGTTACCAACTCTCGACTCGGACACTGAATCGACCGAGTTACCCCCTGATAACTCCACCGCTTCCTCCTCTGAGTTCTCCTCAACTTCCCCCAAATCGGCAGGACACCGTGCCTACAATCAGACGGTCCTTGAAGGTGGCTTAGACATCGGCATTTACAAGGCTATATTGGTTGGACAAGTAGGGCAGAGTCCTATGCAGAAGAGGCTGAAGAATGGGAAATTGATGACGCTTACTACTGTAGGAACGGGTGGGATTAGGAATGAGCGGATTCCATTTCCTAATGAAGAGCCGAGGGAGTATGCTGATCGTTGTAATGTTCAATGGCATCGGGTTGCTATCTATCCAGAACACTTGGGTGATGTTGTAATGAAGAATGCTCCACCTGGTACAATACTTTATCTGGAGGGAAATCTGGAGACAAAAATCTTTACTGATCAAAATACAGGTCTTGTTAAGCGAATGAGGGAAATCGCGATTCGGCGAAATGGGCGTGTTGTGTTTTTGGGAAATGGTGGTGATTTCAGTCAGCCATCTGCACATGAGCTCAAAGGTGTTGGCTATTTCTGAATCCCGAAGGACATCACTGTTCATTTCTCTCAGGCACATGATTCATGATTGGATCAGTCTTCAAGTCGACCTCAAAGGACCAGTGCTCATGTTTTCAAGCATCAATATGTAGGCCGCAAATCGGATTGCCAATATGCCATTTACAATAATCTAACAGAGACAGAGAGTTGTGCCTTAGAAACGTGAAGGATAGTAGCTTGTGTACAGCCTGTTTTCCGATTGCAAGTTCATTGATGGTACTTCCCTAACAAAGAATTACAGTAGATTTTGTTTTTTTGGTTGAGTTGGAAAGCACAAGTAGAGTTTGAAGTTGCAAACGTTGGTGTTGTTACTGCTATCATATGAGATATGACGGAAAATAAGTTGTTGAATAGACCTAAACATTTTTTAAAATAGGAAAGCTGACTGCCAAAAGGCCCAAAAGGCATTAACTGGAGTCGGGCTCTTTGGTCGGAAAATATTAAAATGTTTATATAAAAATTACTAAATGAATGATTTTGCTATGGCTACATTTAAATTGTAGCCATGGTAACTATCTCCGAT

Coding sequence (CDS)

ATGGCTACCTCAAACTCAATGGCAGCAATTTCAAGAAGACTATATCGAAATCTCATCTCAAATAAAAAACCCTCTTGTTATCTTAATCACACTACCAATTCCTTCTTCTCCACTGGACCTTCAATTCCAGACGACAACTTGGATAAATTGCTAGACGAGTTACCAACTCTCGACTCGGACACTGAATCGACCGAGTTACCCCCTGATAACTCCACCGCTTCCTCCTCTGAGTTCTCCTCAACTTCCCCCAAATCGGCAGGACACCGTGCCTACAATCAGACGGTCCTTGAAGGTGGCTTAGACATCGGCATTTACAAGGCTATATTGGTTGGACAAGTAGGGCAGAGTCCTATGCAGAAGAGGCTGAAGAATGGGAAATTGATGACGCTTACTACTGTAGGAACGGGTGGGATTAGGAATGAGCGGATTCCATTTCCTAATGAAGAGCCGAGGGAGTATGCTGATCGTTGTAATGTTCAATGGCATCGGGTTGCTATCTATCCAGAACACTTGGGTGATGTTGTAATGAAGAATGCTCCACCTGGTACAATACTTTATCTGGAGGGAAATCTGGAGACAAAAATCTTTACTGATCAAAATACAGGTCTTGTTAAGCGAATGAGGGAAATCGCGATTCGGCGAAATGGGCGTGTTGTGTTTTTGGGAAATGGTGGTGATTTCAGTCAGCCATCTGCACATGAGCTCAAAGGTGTTGGCTATTTCTGA

Protein sequence

MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSDTESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQKRLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAPPGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGYF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08065.1Spo08065.1mRNA


Homology
[Close]
BLAST of Spo08065.1 vs. NCBI nr
Match: gi|902152158|gb|KNA05586.1| (hypothetical protein SOVF_188820 [Spinacia oleracea])

HSP 1 Score: 484.2 bits (1245), Expect = 1.300e-133
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1 

		  

Query: 1   MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSD 60
           MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSD
Sbjct: 1   MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSD 60

Query: 61  TESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQK 120
           TESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQK
Sbjct: 61  TESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQK 120

Query: 121 RLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAP 180
           RLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAP
Sbjct: 121 RLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAP 180

Query: 181 PGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGY 240
           PGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGY
Sbjct: 181 PGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGY 240

Query: 241 F 242
           F
Sbjct: 241 F 241
[Close]
BLAST of Spo08065.1 vs. NCBI nr
Match: gi|731367438|ref|XP_010695611.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 334.3 bits (856), Expect = 1.700e-88
Identity = 170/241 (70.54%), Postives = 201/241 (83.40%), Query Frame = 1 

		  

Query: 1   MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSD 60
           MA+SNS+AAISRRLYRNL+SN K   +   ++ SFFST P  PD   D LLDELPTL+S+
Sbjct: 1   MASSNSLAAISRRLYRNLLSNSKNPYFHQQSSKSFFSTEPLTPDS--DTLLDELPTLNSE 60

Query: 61  TESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQK 120
           +E+ E   DNS ASSS+  ST P+S   RA ++  LEGGLDIGIYKAILVGQVGQ P+QK
Sbjct: 61  SETNESTHDNSAASSSDSFSTPPESPVRRAASEFSLEGGLDIGIYKAILVGQVGQIPVQK 120

Query: 121 RLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAP 180
           RLKNG ++TLTT+GTGGI+NER+PFPNEEPREYADRCNVQWHRVAIYPE LG++VMK+A 
Sbjct: 121 RLKNGMVVTLTTLGTGGIKNERVPFPNEEPREYADRCNVQWHRVAIYPEKLGEIVMKHAQ 180

Query: 181 PGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGY 240
           PG++LYLEGNLE KIFT+  TGL+KR+REIA+RR+GRVVFLGN  DF+QPS  ELKGVGY
Sbjct: 181 PGSLLYLEGNLERKIFTEPLTGLLKRVREIAVRRDGRVVFLGNSSDFNQPSRDELKGVGY 239

Query: 241 F 242
           F
Sbjct: 241 F 239
[Close]
BLAST of Spo08065.1 vs. NCBI nr
Match: gi|567197507|ref|XP_006406590.1| (hypothetical protein EUTSA_v10021489mg [Eutrema salsugineum])

HSP 1 Score: 244.6 bits (623), Expect = 1.800e-61
Identity = 137/239 (57.32%), Postives = 171/239 (71.55%), Query Frame = 1 

		  

Query: 4   SNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSDTES 63
           +NSMA +SRRLYR+L+SN +     + ++ SF S   SI  D     LDEL + +SDTES
Sbjct: 2   ANSMATLSRRLYRSLLSNPR----FSQSSMSFCSN--SISSD-----LDEL-SANSDTES 61

Query: 64  TELPPDNSTASSSEFSSTSPKSAGH-RAYNQTVLEGGLDIGIYKAILVGQVGQSPMQKRL 123
                       S++S    + +G  R   +  LE GLD GIYKAILVGQVGQ P+QK+L
Sbjct: 62  P---------LESKYSDPMSRVSGEERVMEEHPLENGLDAGIYKAILVGQVGQLPLQKKL 121

Query: 124 KNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAPPG 183
           K+G+ +TL +VGTGGIRN R P  NE+PREYA+R  VQWHRV++YPE L D+V+KN  PG
Sbjct: 122 KSGRTVTLFSVGTGGIRNNRRPMINEDPREYANRSAVQWHRVSVYPERLADLVLKNVEPG 181

Query: 184 TILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGYF 242
           TI+YLEGNLETKIFTD  TGLV+R+RE+AIRRNGRVVFLG  GD  QPS+ EL+GVGY+
Sbjct: 182 TIVYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSSELRGVGYY 219
[Close]
BLAST of Spo08065.1 vs. NCBI nr
Match: gi|674926664|emb|CDY06744.1| (BnaA10g05230D [Brassica napus])

HSP 1 Score: 243.4 bits (620), Expect = 4.000e-61
Identity = 134/238 (56.30%), Postives = 166/238 (69.75%), Query Frame = 1 

		  

Query: 4   SNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSDTES 63
           +NSMA +SRRLYR+L+SN +            FS  P     N +  +DEL +  SDTES
Sbjct: 2   ANSMATLSRRLYRSLLSNPR------------FSQSPRSLCTNNN--VDELSSSISDTES 61

Query: 64  TELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQKRLK 123
              P  N++  +  FS         R   +  LE GLD GI+KAILVGQVGQ P+QK+LK
Sbjct: 62  PHQP--NASDRNHRFSGED------RVMEERPLENGLDAGIFKAILVGQVGQLPLQKKLK 121

Query: 124 NGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAPPGT 183
           +G+ +TL +VGTGGIRN R P  NE+PREYA+R  VQWHRV++YPE L D+V+KN  PGT
Sbjct: 122 SGRTVTLFSVGTGGIRNNRRPLINEDPREYANRSAVQWHRVSVYPERLADLVLKNVEPGT 181

Query: 184 ILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGYF 242
           I+YLEGNLETKIFTD  TGLV+R+RE+AIRRNGRVVFLG  GD  QPS+ EL+GVGY+
Sbjct: 182 IVYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSSELRGVGYY 217
[Close]
BLAST of Spo08065.1 vs. NCBI nr
Match: gi|922412521|ref|XP_013639035.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Brassica oleracea var. oleracea])

HSP 1 Score: 243.0 bits (619), Expect = 5.200e-61
Identity = 134/238 (56.30%), Postives = 165/238 (69.33%), Query Frame = 1 

		  

Query: 4   SNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSDTES 63
           +NSMA +SRRLYR+L+SN +            FS  P     N +  +DEL +  SDTES
Sbjct: 2   ANSMATLSRRLYRSLLSNPR------------FSQSPRSLCTNNN--VDELSSSISDTES 61

Query: 64  TELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQKRLK 123
              P  N++  +  FS         R   +  LE GLD GI+KAILVGQVGQ P+QK+LK
Sbjct: 62  PHQP--NASDRNHRFSGED------RVMEERPLENGLDAGIFKAILVGQVGQLPLQKKLK 121

Query: 124 NGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAPPGT 183
           +G+ +TL +VGTGGIRN R P  NE+PREYA R  VQWHRV++YPE L D+V+KN  PGT
Sbjct: 122 SGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGT 181

Query: 184 ILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGYF 242
           I+YLEGNLETKIFTD  TGLV+R+RE+AIRRNGRVVFLG  GD  QPS+ EL+GVGY+
Sbjct: 182 IVYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSSELRGVGYY 217
[Close]
BLAST of Spo08065.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGA8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188820 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 9.300e-134
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1 

		  

Query: 1   MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSD 60
           MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSD
Sbjct: 1   MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSD 60

Query: 61  TESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQK 120
           TESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQK
Sbjct: 61  TESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQK 120

Query: 121 RLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAP 180
           RLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAP
Sbjct: 121 RLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAP 180

Query: 181 PGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGY 240
           PGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGY
Sbjct: 181 PGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGY 240

Query: 241 F 242
           F
Sbjct: 241 F 241
[Close]
BLAST of Spo08065.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBZ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g125990 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.200e-88
Identity = 170/241 (70.54%), Postives = 201/241 (83.40%), Query Frame = 1 

		  

Query: 1   MATSNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSD 60
           MA+SNS+AAISRRLYRNL+SN K   +   ++ SFFST P  PD   D LLDELPTL+S+
Sbjct: 1   MASSNSLAAISRRLYRNLLSNSKNPYFHQQSSKSFFSTEPLTPDS--DTLLDELPTLNSE 60

Query: 61  TESTELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQK 120
           +E+ E   DNS ASSS+  ST P+S   RA ++  LEGGLDIGIYKAILVGQVGQ P+QK
Sbjct: 61  SETNESTHDNSAASSSDSFSTPPESPVRRAASEFSLEGGLDIGIYKAILVGQVGQIPVQK 120

Query: 121 RLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAP 180
           RLKNG ++TLTT+GTGGI+NER+PFPNEEPREYADRCNVQWHRVAIYPE LG++VMK+A 
Sbjct: 121 RLKNGMVVTLTTLGTGGIKNERVPFPNEEPREYADRCNVQWHRVAIYPEKLGEIVMKHAQ 180

Query: 181 PGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGY 240
           PG++LYLEGNLE KIFT+  TGL+KR+REIA+RR+GRVVFLGN  DF+QPS  ELKGVGY
Sbjct: 181 PGSLLYLEGNLERKIFTEPLTGLLKRVREIAVRRDGRVVFLGNSSDFNQPSRDELKGVGY 239

Query: 241 F 242
           F
Sbjct: 241 F 239
[Close]
BLAST of Spo08065.1 vs. UniProtKB/TrEMBL
Match: V4M6U7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021489mg PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.200e-61
Identity = 137/239 (57.32%), Postives = 171/239 (71.55%), Query Frame = 1 

		  

Query: 4   SNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSDTES 63
           +NSMA +SRRLYR+L+SN +     + ++ SF S   SI  D     LDEL + +SDTES
Sbjct: 2   ANSMATLSRRLYRSLLSNPR----FSQSSMSFCSN--SISSD-----LDEL-SANSDTES 61

Query: 64  TELPPDNSTASSSEFSSTSPKSAGH-RAYNQTVLEGGLDIGIYKAILVGQVGQSPMQKRL 123
                       S++S    + +G  R   +  LE GLD GIYKAILVGQVGQ P+QK+L
Sbjct: 62  P---------LESKYSDPMSRVSGEERVMEEHPLENGLDAGIYKAILVGQVGQLPLQKKL 121

Query: 124 KNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAPPG 183
           K+G+ +TL +VGTGGIRN R P  NE+PREYA+R  VQWHRV++YPE L D+V+KN  PG
Sbjct: 122 KSGRTVTLFSVGTGGIRNNRRPMINEDPREYANRSAVQWHRVSVYPERLADLVLKNVEPG 181

Query: 184 TILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGYF 242
           TI+YLEGNLETKIFTD  TGLV+R+RE+AIRRNGRVVFLG  GD  QPS+ EL+GVGY+
Sbjct: 182 TIVYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSSELRGVGYY 219
[Close]
BLAST of Spo08065.1 vs. UniProtKB/TrEMBL
Match: A0A078F1K6_BRANA (BnaA10g05230D protein OS=Brassica napus GN=BnaA10g05230D PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.800e-61
Identity = 134/238 (56.30%), Postives = 166/238 (69.75%), Query Frame = 1 

		  

Query: 4   SNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSDTES 63
           +NSMA +SRRLYR+L+SN +            FS  P     N +  +DEL +  SDTES
Sbjct: 2   ANSMATLSRRLYRSLLSNPR------------FSQSPRSLCTNNN--VDELSSSISDTES 61

Query: 64  TELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQKRLK 123
              P  N++  +  FS         R   +  LE GLD GI+KAILVGQVGQ P+QK+LK
Sbjct: 62  PHQP--NASDRNHRFSGED------RVMEERPLENGLDAGIFKAILVGQVGQLPLQKKLK 121

Query: 124 NGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAPPGT 183
           +G+ +TL +VGTGGIRN R P  NE+PREYA+R  VQWHRV++YPE L D+V+KN  PGT
Sbjct: 122 SGRTVTLFSVGTGGIRNNRRPLINEDPREYANRSAVQWHRVSVYPERLADLVLKNVEPGT 181

Query: 184 ILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGYF 242
           I+YLEGNLETKIFTD  TGLV+R+RE+AIRRNGRVVFLG  GD  QPS+ EL+GVGY+
Sbjct: 182 IVYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSSELRGVGYY 217
[Close]
BLAST of Spo08065.1 vs. UniProtKB/TrEMBL
Match: A0A0D3ACJ2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.600e-61
Identity = 134/238 (56.30%), Postives = 165/238 (69.33%), Query Frame = 1 

		  

Query: 4   SNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSDTES 63
           +NSMA +SRRLYR+L+SN +            FS  P     N +  +DEL +  SDTES
Sbjct: 2   ANSMATLSRRLYRSLLSNPR------------FSQSPRSLCTNNN--VDELSSSISDTES 61

Query: 64  TELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQKRLK 123
              P  N++  +  FS         R   +  LE GLD GI+KAILVGQVGQ P+QK+LK
Sbjct: 62  PHQP--NASDRNHRFSGED------RVMEERPLENGLDAGIFKAILVGQVGQLPLQKKLK 121

Query: 124 NGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAPPGT 183
           +G+ +TL +VGTGGIRN R P  NE+PREYA R  VQWHRV++YPE L D+V+KN  PGT
Sbjct: 122 SGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGT 181

Query: 184 ILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGYF 242
           I+YLEGNLETKIFTD  TGLV+R+RE+AIRRNGRVVFLG  GD  QPS+ EL+GVGY+
Sbjct: 182 IVYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSSELRGVGYY 217
[Close]
BLAST of Spo08065.1 vs. ExPASy Swiss-Prot
Match: SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.800e-21
Identity = 65/205 (31.71%), Postives = 111/205 (54.15%), Query Frame = 1 

		  

Query: 32  TNSFFSTGPSIPDDNLDKLLDELPTLDSDTESTELPPDNSTASSSEFSSTSPKSAGHRAY 91
           + S+FSTGP   D+ +++  +E     + TE  EL P               K  G R  
Sbjct: 28  SKSWFSTGPI--DEGVEEDFEE-----NVTERPELQPHGVDPR---------KGWGFR-- 87

Query: 92  NQTVLEGGLDIGIYKAILVGQVGQSPMQKRLKNGKLMTLTTVGTGGIRNERIPFPNEEPR 151
                      G+++AI+ G+VGQ+P+QK L+NG+ +T+ TVGTGG+ ++R+     +P+
Sbjct: 88  -----------GVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK 147

Query: 152 EYADRCNVQWHRVAIYPEHLGDVVMKNAPPGTILYLEGNLETKIFTDQNTGLVKRMREIA 211
                   QWHR+A++ E LG   ++     + +Y+EG++ET+++ D  +  VK + EI 
Sbjct: 148 P------AQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEIC 197

Query: 212 IRRNGRVVFLGNGGDFSQPSAHELK 237
           +RR+G++  +  G   S+ S  ELK
Sbjct: 208 VRRDGKIRMIKYGESISKISFDELK 197
[Close]
BLAST of Spo08065.1 vs. ExPASy Swiss-Prot
Match: SSB_WIGBR (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis GN=ssb PE=3 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-10
Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 1 

		  

Query: 103 GIYKAILVGQVGQSPMQKRLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWH 162
           GI K IL+G +GQ P  + + NG  +T  ++ T     ++    ++E  E        WH
Sbjct: 5   GINKVILIGNLGQDPEVRYIPNGNAITNLSLATSENWRDKNTGESKEKTE--------WH 64

Query: 163 RVAIYPEHLGDVVMKNAPPGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLG 222
           RV ++ + L +V  +    G+ +Y+EGNL+T+ + DQN G  + + EI +  NG +  LG
Sbjct: 65  RVILFGK-LAEVAGEYLKKGSQVYIEGNLQTRKWQDQN-GQDRYITEIVVGINGCMQMLG 124

Query: 223 NGG--DFSQPSAHE 235
           N    D+++P A E
Sbjct: 125 NRASYDYTKPEAKE 128
[Close]
BLAST of Spo08065.1 vs. ExPASy Swiss-Prot
Match: SSB2_SALTY (Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ssb2 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.700e-8
Identity = 42/131 (32.06%), Postives = 65/131 (49.62%), Query Frame = 1 

		  

Query: 103 GIYKAILVGQVGQSPMQKRLKNGKL---MTLTTVGTGGIRNERIPFPNEEPREYADRCNV 162
           G+ K ILVG +GQ P  + + NG     +TL T  T  +R +       E RE+ +    
Sbjct: 5   GVNKVILVGHIGQDPEVRYMPNGGAVANLTLATSETWRVRQDG------EMREHTE---- 64

Query: 163 QWHRVAIYPEHLGDVVMKNAPPGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVV 222
            WHRV ++ + L ++  +    G  +Y+EG L T+ +TDQ +G  K   E+ +   G + 
Sbjct: 65  -WHRVVVFGK-LAEIASEYLRKGAQVYIEGQLRTRKWTDQ-SGQDKYTTEVIVNVGGTMQ 120

Query: 223 FLGNGGDFSQP 231
            LG     SQP
Sbjct: 125 MLGRHN--SQP 120
[Close]
BLAST of Spo08065.1 vs. ExPASy Swiss-Prot
Match: SSB_ECOLI (Single-stranded DNA-binding protein OS=Escherichia coli (strain K12) GN=ssb PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.500e-7
Identity = 37/135 (27.41%), Postives = 63/135 (46.67%), Query Frame = 1 

		  

Query: 103 GIYKAILVGQVGQSPMQKRLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWH 162
           G+ K ILVG +GQ P  + + NG  +   T+ T     ++     +E  E        WH
Sbjct: 5   GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 64

Query: 163 RVAIYPEHLGDVVMKNAPPGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLG 222
           RV ++ + L +V  +    G+ +Y+EG L T+ +TDQ +G  +   E+ +   G +  LG
Sbjct: 65  RVVLFGK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQMLG 124

Query: 223 NGGDFSQPSAHELKG 238
                  P+   + G
Sbjct: 125 GRQGGGAPAGGNIGG 129
[Close]
BLAST of Spo08065.1 vs. ExPASy Swiss-Prot
Match: SSB_ECOL6 (Single-stranded DNA-binding protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ssb PE=3 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.500e-7
Identity = 37/135 (27.41%), Postives = 63/135 (46.67%), Query Frame = 1 

		  

Query: 103 GIYKAILVGQVGQSPMQKRLKNGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWH 162
           G+ K ILVG +GQ P  + + NG  +   T+ T     ++     +E  E        WH
Sbjct: 5   GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 64

Query: 163 RVAIYPEHLGDVVMKNAPPGTILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLG 222
           RV ++ + L +V  +    G+ +Y+EG L T+ +TDQ +G  +   E+ +   G +  LG
Sbjct: 65  RVVLFGK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQMLG 124

Query: 223 NGGDFSQPSAHELKG 238
                  P+   + G
Sbjct: 125 GRQGGGAPAGGNIGG 129
[Close]
BLAST of Spo08065.1 vs. TAIR (Arabidopsis)
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 238.0 bits (606), Expect = 5.900e-63
Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 1 

		  

Query: 4   SNSMAAISRRLYRNLISNKKPSCYLNHTTNSFFSTGPSIPDDNLDKLLDELPTLDSDTES 63
           +NSMA +SRRLYR+L+SN +    ++  + SF +   + P+D             SD + 
Sbjct: 2   ANSMATLSRRLYRSLLSNPR----ISQASMSFCTNNITSPED-------------SDFDE 61

Query: 64  TELPPDNSTASSSEFSSTSPKSAGHRAYNQTVLEGGLDIGIYKAILVGQVGQSPMQKRLK 123
            E P +   +        S  S   R   +  LE GLD GI+KAILVGQVGQ P+QK+LK
Sbjct: 62  LESPIEPKASDP-----VSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLK 121

Query: 124 NGKLMTLTTVGTGGIRNERIPFPNEEPREYADRCNVQWHRVAIYPEHLGDVVMKNAPPGT 183
           +G+ +TL +VGTGGIRN R P  NE+PREYA R  VQWHRV++YPE L D+V+KN  PGT
Sbjct: 122 SGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGT 181

Query: 184 ILYLEGNLETKIFTDQNTGLVKRMREIAIRRNGRVVFLGNGGDFSQPSAHELKGVGYF 242
           ++YLEGNLETKIFTD  TGLV+R+RE+AIRRNGRVVFLG  GD  QPS+ EL+GVGY+
Sbjct: 182 VIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSAELRGVGYY 217
[Close]
BLAST of Spo08065.1 vs. TAIR (Arabidopsis)
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein)

HSP 1 Score: 104.4 bits (259), Expect = 1.000e-22
Identity = 65/205 (31.71%), Postives = 111/205 (54.15%), Query Frame = 1 

		  

Query: 32  TNSFFSTGPSIPDDNLDKLLDELPTLDSDTESTELPPDNSTASSSEFSSTSPKSAGHRAY 91
           + S+FSTGP   D+ +++  +E     + TE  EL P               K  G R  
Sbjct: 28  SKSWFSTGPI--DEGVEEDFEE-----NVTERPELQPHGVDPR---------KGWGFR-- 87

Query: 92  NQTVLEGGLDIGIYKAILVGQVGQSPMQKRLKNGKLMTLTTVGTGGIRNERIPFPNEEPR 151
                      G+++AI+ G+VGQ+P+QK L+NG+ +T+ TVGTGG+ ++R+     +P+
Sbjct: 88  -----------GVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK 147

Query: 152 EYADRCNVQWHRVAIYPEHLGDVVMKNAPPGTILYLEGNLETKIFTDQNTGLVKRMREIA 211
                   QWHR+A++ E LG   ++     + +Y+EG++ET+++ D  +  VK + EI 
Sbjct: 148 P------AQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEIC 197

Query: 212 IRRNGRVVFLGNGGDFSQPSAHELK 237
           +RR+G++  +  G   S+ S  ELK
Sbjct: 208 VRRDGKIRMIKYGESISKISFDELK 197
The following BLAST results are available for this feature:
BLAST of Spo08065.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902152158|gb|KNA05586.1|1.3e-133100.hypothetical protein SOVF_1888... [more]
gi|731367438|ref|XP_010695611.1|1.7e-8870.5PREDICTED: single-stranded DNA... [more]
gi|567197507|ref|XP_006406590.1|1.8e-6157.3hypothetical protein EUTSA_v10... [more]
gi|674926664|emb|CDY06744.1|4.0e-6156.3BnaA10g05230D [Brassica napus][more]
gi|922412521|ref|XP_013639035.1|5.2e-6156.3PREDICTED: single-stranded DNA... [more]
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BLAST of Spo08065.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QGA8_SPIOL9.3e-134100.Uncharacterized protein OS=Spi... [more]
A0A0J8BBZ0_BETVU1.2e-8870.5Uncharacterized protein OS=Bet... [more]
V4M6U7_EUTSA1.2e-6157.3Uncharacterized protein OS=Eut... [more]
A0A078F1K6_BRANA2.8e-6156.3BnaA10g05230D protein OS=Brass... [more]
A0A0D3ACJ2_BRAOL3.6e-6156.3Uncharacterized protein OS=Bra... [more]
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BLAST of Spo08065.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SSBP_ARATH1.8e-2131.7Single-stranded DNA-binding pr... [more]
SSB_WIGBR1.1e-1032.0Single-stranded DNA-binding pr... [more]
SSB2_SALTY8.7e-832.0Single-stranded DNA-binding pr... [more]
SSB_ECOLI1.5e-727.4Single-stranded DNA-binding pr... [more]
SSB_ECOL61.5e-727.4Single-stranded DNA-binding pr... [more]
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BLAST of Spo08065.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G18580.15.9e-6353.3Nucleic acid-binding, OB-fold-... [more]
AT4G11060.11.0e-2231.7mitochondrially targeted singl... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000424Primosome PriB/single-strand DNA-bindingPFAMPF00436SSBcoord: 106..213
score: 7.7
IPR000424Primosome PriB/single-strand DNA-bindingPROFILEPS50935SSBcoord: 104..219
score: 11
IPR011344Single-stranded DNA-binding proteinPANTHERPTHR10302SINGLE-STRANDED DNA-BINDING PROTEINcoord: 6..229
score: 1.1
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 103..222
score: 9.6
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 103..214
score: 1.65
NoneNo IPR availablePANTHERPTHR10302:SF3SINGLE-STRANDED DNA-BINDING PROTEINcoord: 6..229
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
biological_process GO:0006450 regulation of translational fidelity
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006412 translation
biological_process GO:0006334 nucleosome assembly
biological_process GO:0009658 chloroplast organization
biological_process GO:0048481 plant ovule development
biological_process GO:0006457 protein folding
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0010157 response to chlorate
biological_process GO:0009651 response to salt stress
biological_process GO:0009414 response to water deprivation
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006429 leucyl-tRNA aminoacylation
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0006397 mRNA processing
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006364 rRNA processing
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006479 protein methylation
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006950 response to stress
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0034969 histone arginine methylation
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009704 de-etiolation
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0032502 developmental process
biological_process GO:0016458 gene silencing
biological_process GO:0043414 macromolecule methylation
biological_process GO:0007275 multicellular organism development
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0006325 chromatin organization
biological_process GO:0009553 embryo sac development
biological_process GO:0006554 lysine catabolic process
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0051301 cell division
biological_process GO:0022402 cell cycle process
biological_process GO:0010468 regulation of gene expression
biological_process GO:0050794 regulation of cellular process
biological_process GO:0006996 organelle organization
biological_process GO:0048856 anatomical structure development
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:1903047 mitotic cell cycle process
cellular_component GO:0044446 intracellular organelle part
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0005777 peroxisome
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0009506 plasmodesma
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005618 cell wall
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0019843 rRNA binding
molecular_function GO:0043021 ribonucleoprotein complex binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0004427 inorganic diphosphatase activity
molecular_function GO:0042393 histone binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0005488 binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0002161 aminoacyl-tRNA editing activity
molecular_function GO:0004823 leucine-tRNA ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008469 histone-arginine N-methyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo041170.73Barchart | Table
Spo175130.73Barchart | Table
Spo074230.73Barchart | Table
Spo156050.73Barchart | Table
Spo143230.73Barchart | Table
Spo132410.72Barchart | Table
Spo110720.72Barchart | Table
Spo226380.71Barchart | Table
Spo243950.71Barchart | Table
Spo189370.71Barchart | Table
Spo099590.71Barchart | Table
Spo070750.71Barchart | Table
Spo049750.70Barchart | Table
Spo011300.70Barchart | Table
Spo170650.70Barchart | Table
Spo264880.70Barchart | Table
Spo258410.69Barchart | Table
Spo226800.69Barchart | Table
Spo103370.69Barchart | Table
Spo239760.69Barchart | Table
Spo005040.69Barchart | Table
Spo247500.69Barchart | Table
Spo264520.68Barchart | Table
Spo164600.68Barchart | Table
Spo148840.68Barchart | Table
Spo141390.68Barchart | Table
Spo148230.68Barchart | Table
Spo012360.68Barchart | Table
Spo047550.68Barchart | Table
Spo009200.68Barchart | Table
Spo082850.68Barchart | Table
Spo225350.68Barchart | Table
Spo086640.68Barchart | Table
Spo197990.68Barchart | Table
Spo108820.68Barchart | Table
Spo109810.68Barchart | Table
Spo121930.68Barchart | Table
Spo212780.67Barchart | Table
Spo020450.67Barchart | Table
Spo029310.67Barchart | Table
Spo039640.67Barchart | Table
Spo045010.67Barchart | Table
Spo058910.67Barchart | Table
Spo064930.67Barchart | Table
Spo118700.67Barchart | Table
Spo128740.67Barchart | Table
Spo136510.67Barchart | Table
Spo137320.67Barchart | Table
Spo157110.67Barchart | Table
Spo246740.67Barchart | Table
Spo271000.67Barchart | Table
Spo052100.66Barchart | Table
Spo183930.66Barchart | Table
Spo257490.66Barchart | Table
Spo094230.66Barchart | Table
Spo031890.66Barchart | Table
Spo132040.66Barchart | Table
Spo089310.66Barchart | Table
Spo152350.66Barchart | Table
Spo100240.66Barchart | Table
Spo088160.66Barchart | Table
Spo222910.66Barchart | Table
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