Spo08172 (gene)

Overview
NameSpo08172
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L34, putative
Locationchr5 : 10692612 .. 10696386 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAGTAAATAAAAAGAAGGGAAACGTGGCAACATCTCAACCGTCAAAAAGGGGCTCGTGGTATAAACCATTAGATCTAGGGTTACTCAAAAACAGGGAAGGGTTTTAATTTGATAGCCTCCGCAAAGCATCAAAACCTCTGCTGTCGCCCCATCTCCAGAGTAAGAGAGAGAAAGGAGACTGAGACGACGAAGAGCGGTAAGAGGAAGAGAGAGAAAATTACTCAAAAATGGTGATGCGTCTCACTTACCGTACACGGCATAGCTATGCCACCAAATCCAACCAACACCGCATCGTCAAAACCCCTGGTATTCCCTCAATTTACCCCATTTCTCGCATTTCTTTGTTAATTATTGGGGTGTTACCATAATGTTCTTGTGATTTTTTGGTTTCTCATTTGGATTTTTTGTTTATTATTATTGGGTATTTGGTTATAATGGTAGGATTGTAAATTGATAATGTTGATGGTGATTATTTAAGGTGGAAAGTTGGTTTACCAGACTACAAAGAAGAGAGCCAGTGGTCCTAAGTGCCCTGTCACTGGAAAGAGAATCCAAGGGGTATGCTGATTTATCTCTTTCTTTGTGTTTTTTGAATCTTCGCAATGTCGATTGTTAATTTTTATTTTACGTTCTGAATTTGTTTGGAATTAATTTAATTGTTGCGTGGATATTGTAATACGAACTAGTAGTGTGATCGACTAATTGCAGACGGAGGGATTGAGTTGTATGTTTCTGTTGATGTTTGTGAAATGTAGTATTGTAATACGTTTGCCTATTGAATTGTGTATTATGTTAATTAACGTATTGATTAGATGAACATTAAGCAATTGGTGATCGTAAATGAATGGAAGGCGCCATTTTTGAGGTGTATGTTTGTGTTAATCTGTGTGGAATGTGGTATTGCGGTATTTGAAGGGATATGCTTAGCGTGTTAGTTTTAATCGTTTAAATGGTTGAATTGTGTATTATGTTGAGCAAAACATTGATTAGGTGATTATTCTGCAATTGGTGATTGAAAATGAATGGAAGGCTCCATTTTTGTTATAAAAATGTTCATACTAGTCTTGTAGATGGTATTTGTTGATGGTTGTTGATTTTTGAAATTTTGTTGAAATGGTGTCGGATATTTTGTTTCACAATTTTATACTCCTCCTGCAATAGCCGCGATAGAATAAGTCATATCATAGTTTTAGTTCTAAGTTAACAATTACTCCCTAATCCCTATTAGGAGTTCCTGAGGAGTTTGGTGAAGTTGTGAAGGGTTTGTACAGTGAAAGTAGCTGTCCTCAAAAGTAAGGTGAATTTTGGAAGGTAAAGTTGCTAAAGCTTACGGAGTTGTAGTATTACATCGGGTTGTGCTGTTTCCTTGAATGATCCTAAATCAAAGGCAGCCTCATCATTTAGGGAGTAGTACTAGAGGAAATGTGTCTCAGCTGCAGAGTTACTATGAGCTGTTGATTTACCCATCATCTTAGCAGCATATTTTTGGTAAATGTGTAGAACTGTGTAGTATGGATGGATGGTGAAGTTGTTGCACTGGTTTAATTGCCATGTGGTGCAGATACAGTTAAAGTTTGATACTGTAACATGTTTGAGTTATGGGTTAGTTAGAAGCAAGCTGTGGCACTTTCAATCTTGTTATGTTTCTTAGTATGAGCTAATCTCTGGTGATTCTTTTGGGGATTGAGGTTAGCCCAGCCATGATTGTCAAATCTTGTTACTTTTCTTATTATGAGCCCATCTCCAGTGATTCTTTTGGGTATATTGAGGTATTGAGGTTAGCCCAGCCATGATTATCCTTTTGGGAGTTTTTTGTTTCTATCTCTGAGGATCTTCTACATAATTTTCTATTTCTAGTGTTATTTTAGGCTAGGTTGTGACAGCAAACTTGATATTGTTTGCGACTCTGGTCGTCGATGTGTAGTTGGGTATGAAATTTAGTTATTGGCTTTGGAGTATGGATGGGGTAGTTGTTGCAACGGTTTAACTGCTGTGTGGTGCAGATACAGTTCGATACAGCAACAGGTTTGAGTTTATGGGTTTGTTAGAACGTAGAACCAAGATGTGGCACTCTCAATCTTGTTACTTGCCTTATTATTAGCTTATTTCTGGTGATTCTTTTGGGGGGTAAGGTATTGAGGTTAGCCCACCCTTGATTGTCAACCATGTTTTTCTTTTGGAAAATATGTTTTTTGTTTTCATCTCTGAGGATCTTCTGCATTTATTTCTGTGTTATGTTAGGCTAGGTTGTGTCAGAGCGAACTTGATATGGTTTGTGACTCTGGCCGTTAGGGTGTGTAGTTAGGTATGAAATGTATGTAATTATTGGCTTTCCATTTCTCTCCATTTACAAGTAGTAATTGGTTTCTTATATTTCCATTACAATTTGGTACTCCCTCTACCGCTAGGTCACAATATAGTTTTAGTTCGTAAGTTAATAATTACTCCTTAGTCGTATATCTCTAGTAGTTCCTAAGAAGTTGGTAAGGTGAAGTTGTGAAAGTTTTGTATAGTGAAGGAAGCTGGCCTATTCATAACGGGACCACAAAATTAAGGTGAATTTAGTAAGGTGAAGTTGTGAAAGGTTATAGAGTTGTAGTATTACATTGATAACTTGAATGACCCTAAATCAAAGGCGGTCTTATCATTTAGGGATTGAGGTAGTACTAGAAGAAATGTGTGTCTTGATCAGTCACCAACTTACTGTCAGCTGTTGATTTTATTTACGATATCTCTTAGCAACATGCTTTTGGTTAATCTGTAGACCTTTAGAGTATGAATGGTGTAGATGTTGGTCTGGTTTAATTGCCATGCAGACACAGTTTGATAATGTAATCGCTTTGAATTTATGGGTTTGTAAGGTTCAAGATGTGGCACCCTTTAACTTTGTTGCTTTTCTAATTTTGAGTTAATTTGTGGTGCTTTTTTTTGAGGATTGAGTTATTGAGTTGGAACCATTCATGATTGCTCCATGTTTTCTATTTGGGAATTAGTGATTCTATTTCCATCTCTGAGGATCTTTCACATAAAGTTCTACTTCTAGTGTTATTTTAGTCTCGGTTGTGTCAGAATGAACTTGACATGGTTTATTCTGGTCACTAAGACAGTAGGATGTGTAATTAGGTATGAAATCTAGTCATTGGCTTTCCGTTTCTCTCCATTACAAGTAGTAATTTCCTTATTTCAGTCAAGTTTTAAAGATATAAGGTTCCCGACAAAGTTGCCTATCATTGCATCTTCTGCAAGGAATATATATTTGATTAGTAGTTCTGTATCTTATATTCAACAGCTGGTTTATGTTTATCTTTTATGTCTGGTATTTAATTAGACATTTGTTGTGTTTTATTTGTATGATCGATTTCATCTGTTTTGGCACTTGGTGCAAGTCCTTATTTGTTGAGGGATTGTATGTGCAATTTTTTTATTGGTTTCCTTGCGACTTTTTTGCAGATTCCTCATCTGAGGCCTACTGAGTACAAGAGAAGCAGATTGCCCAGGAACAGGCGCACCGTCAACCGCCCATATGGAGGTGTTCTATCTGGCAGTGCTGTCCGTGAAAGGTTTGTTGTTAACTTTCATGAAAACATTGATATGCAATCTTTCTTTAGTTGGTGCTTCACATGCCCACATACTTCCAATTCTGATGCGATTTCCTTGTGTTTCTCTTTATCCAATCAGAATCATCCGAGCTTTCTTGATTGAAGAGCAGAAGATCGTGAAAAAGGTTTTGAAGATTCAGAAAACTAAAGAAAAGGCAAACAAGAGCTAG

mRNA sequence

AAAAAAAAGTAAATAAAAAGAAGGGAAACGTGGCAACATCTCAACCGTCAAAAAGGGGCTCGTGGTATAAACCATTAGATCTAGGGTTACTCAAAAACAGGGAAGGGTTTTAATTTGATAGCCTCCGCAAAGCATCAAAACCTCTGCTGTCGCCCCATCTCCAGAGTAAGAGAGAGAAAGGAGACTGAGACGACGAAGAGCGGTAAGAGGAAGAGAGAGAAAATTACTCAAAAATGGTGATGCGTCTCACTTACCGTACACGGCATAGCTATGCCACCAAATCCAACCAACACCGCATCGTCAAAACCCCTGGTGGAAAGTTGGTTTACCAGACTACAAAGAAGAGAGCCAGTGGTCCTAAGTGCCCTGTCACTGGAAAGAGAATCCAAGGGATTCCTCATCTGAGGCCTACTGAGTACAAGAGAAGCAGATTGCCCAGGAACAGGCGCACCGTCAACCGCCCATATGGAGGTGTTCTATCTGGCAGTGCTGTCCGTGAAAGAATCATCCGAGCTTTCTTGATTGAAGAGCAGAAGATCGTGAAAAAGGTTTTGAAGATTCAGAAAACTAAAGAAAAGGCAAACAAGAGCTAG

Coding sequence (CDS)

ATGGTGATGCGTCTCACTTACCGTACACGGCATAGCTATGCCACCAAATCCAACCAACACCGCATCGTCAAAACCCCTGGTGGAAAGTTGGTTTACCAGACTACAAAGAAGAGAGCCAGTGGTCCTAAGTGCCCTGTCACTGGAAAGAGAATCCAAGGGATTCCTCATCTGAGGCCTACTGAGTACAAGAGAAGCAGATTGCCCAGGAACAGGCGCACCGTCAACCGCCCATATGGAGGTGTTCTATCTGGCAGTGCTGTCCGTGAAAGAATCATCCGAGCTTTCTTGATTGAAGAGCAGAAGATCGTGAAAAAGGTTTTGAAGATTCAGAAAACTAAAGAAAAGGCAAACAAGAGCTAG

Protein sequence

MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEKANKS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08172.1Spo08172.1mRNA


Homology
[Close]
BLAST of Spo08172.1 vs. NCBI nr
Match: gi|902211220|gb|KNA16653.1| (hypothetical protein SOVF_087240 [Spinacia oleracea])

HSP 1 Score: 231.1 bits (588), Expect = 1.000e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEKANKS 120
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEKANKS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEKANKS 119
[Close]
BLAST of Spo08172.1 vs. NCBI nr
Match: gi|731363081|ref|XP_010693235.1| (PREDICTED: 60S ribosomal protein L34 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 219.5 bits (558), Expect = 3.000e-54
Identity = 115/120 (95.83%), Postives = 116/120 (96.67%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK-ANKS 120
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFL+EEQKIVKKVLKIQKTKEK A KS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAGKS 120
[Close]
BLAST of Spo08172.1 vs. NCBI nr
Match: gi|731344027|ref|XP_010683191.1| (PREDICTED: 60S ribosomal protein L34 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 219.5 bits (558), Expect = 3.000e-54
Identity = 115/120 (95.83%), Postives = 116/120 (96.67%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK-ANKS 120
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFL+EEQKIVKKVLKIQKTKEK A KS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAGKS 120
[Close]
BLAST of Spo08172.1 vs. NCBI nr
Match: gi|731335043|ref|XP_010678528.1| (PREDICTED: 60S ribosomal protein L34-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 218.4 bits (555), Expect = 6.800e-54
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHRIVKTPGG+LVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRIVKTPGGRLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFL+EEQKIVKKVLKIQKTKEK
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKTKEK 115
[Close]
BLAST of Spo08172.1 vs. NCBI nr
Match: gi|902232968|gb|KNA22879.1| (hypothetical protein SOVF_029870 [Spinacia oleracea])

HSP 1 Score: 218.0 bits (554), Expect = 8.800e-54
Identity = 115/120 (95.83%), Postives = 115/120 (95.83%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK-ANKS 120
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQK KEK A KS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKAKEKVAGKS 120
[Close]
BLAST of Spo08172.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAX1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_087240 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.000e-58
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEKANKS 120
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEKANKS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEKANKS 119
[Close]
BLAST of Spo08172.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4E0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153960 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.100e-54
Identity = 115/120 (95.83%), Postives = 116/120 (96.67%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK-ANKS 120
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFL+EEQKIVKKVLKIQKTKEK A KS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAGKS 120
[Close]
BLAST of Spo08172.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGP5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g046660 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.100e-54
Identity = 115/120 (95.83%), Postives = 116/120 (96.67%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK-ANKS 120
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFL+EEQKIVKKVLKIQKTKEK A KS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAGKS 120
[Close]
BLAST of Spo08172.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAN2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114840 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.700e-54
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHRIVKTPGG+LVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRIVKTPGGRLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFL+EEQKIVKKVLKIQKTKEK
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKTKEK 115
[Close]
BLAST of Spo08172.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVD6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029870 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.200e-54
Identity = 115/120 (95.83%), Postives = 115/120 (95.83%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK-ANKS 120
           EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQK KEK A KS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKAKEKVAGKS 120
[Close]
BLAST of Spo08172.1 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.200e-54
Identity = 108/115 (93.91%), Postives = 110/115 (95.65%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRL RNRRTVNR YGGVLSG AVRERIIRAFL+EEQKIVKKVLKIQKTKEK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEK 115
[Close]
BLAST of Spo08172.1 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.600e-53
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RLTYR RHSYATKSNQHR+VKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRL RNRRTVNR YGGVLSGSAVRERIIRAFL+EEQKIVKKVLKIQK KEK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115
[Close]
BLAST of Spo08172.1 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.700e-53
Identity = 106/115 (92.17%), Postives = 109/115 (94.78%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RL YR+RHSYATKSNQHRIVKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRL RNRRTVNR YGGVLSGSAVRERIIRAFL+EEQKIVKKVLK+QK KEK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEK 115
[Close]
BLAST of Spo08172.1 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.700e-53
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RL YR+RHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRL RNRRTVNR YGGVLSGSAVRERIIRAFL+EEQKIVKKVLK+QK KEK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEK 115
[Close]
BLAST of Spo08172.1 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-50
Identity = 101/115 (87.83%), Postives = 105/115 (91.30%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RL YR+RHSYATKSNQHRIVKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRL RN RTVNR YGGVLSG AVRERI+RAFL+EEQKIVKKVLK+QK KEK
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEK 115
[Close]
BLAST of Spo08172.1 vs. TAIR (Arabidopsis)
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein)

HSP 1 Score: 208.0 bits (528), Expect = 3.200e-54
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RL YR+RHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRL RNRRTVNR YGGVLSGSAVRERIIRAFL+EEQKIVKKVLK+QK KEK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEK 115
[Close]
BLAST of Spo08172.1 vs. TAIR (Arabidopsis)
Match: AT1G69620.1 (ribosomal protein L34)

HSP 1 Score: 208.0 bits (528), Expect = 3.200e-54
Identity = 106/115 (92.17%), Postives = 109/115 (94.78%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RL YR+RHSYATKSNQHRIVKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRL RNRRTVNR YGGVLSGSAVRERIIRAFL+EEQKIVKKVLK+QK KEK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEK 115
[Close]
BLAST of Spo08172.1 vs. TAIR (Arabidopsis)
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 1.100e-51
Identity = 101/115 (87.83%), Postives = 105/115 (91.30%), Query Frame = 1 

		  

Query: 1   MVMRLTYRTRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
           MV RL YR+RHSYATKSNQHRIVKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKEK 116
           EYKRSRL RN RTVNR YGGVLSG AVRERI+RAFL+EEQKIVKKVLK+QK KEK
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEK 115
The following BLAST results are available for this feature:
BLAST of Spo08172.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902211220|gb|KNA16653.1|1.0e-57100.hypothetical protein SOVF_0872... [more]
gi|731363081|ref|XP_010693235.1|3.0e-5495.8PREDICTED: 60S ribosomal prote... [more]
gi|731344027|ref|XP_010683191.1|3.0e-5495.8PREDICTED: 60S ribosomal prote... [more]
gi|731335043|ref|XP_010678528.1|6.8e-5496.5PREDICTED: 60S ribosomal prote... [more]
gi|902232968|gb|KNA22879.1|8.8e-5495.8hypothetical protein SOVF_0298... [more]
back to top
BLAST of Spo08172.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RAX1_SPIOL7.0e-58100.Uncharacterized protein OS=Spi... [more]
A0A0J8C4E0_BETVU2.1e-5495.8Uncharacterized protein OS=Bet... [more]
A0A0J8BGP5_BETVU2.1e-5495.8Uncharacterized protein OS=Bet... [more]
A0A0J8CAN2_BETVU4.7e-5496.5Uncharacterized protein OS=Bet... [more]
A0A0K9RVD6_SPIOL6.2e-5495.8Uncharacterized protein OS=Spi... [more]
back to top
BLAST of Spo08172.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL34_PEA5.2e-5493.960S ribosomal protein L34 OS=P... [more]
RL34_TOBAC2.6e-5392.160S ribosomal protein L34 OS=N... [more]
RL342_ARATH5.7e-5392.160S ribosomal protein L34-2 OS... [more]
RL341_ARATH5.7e-5392.160S ribosomal protein L34-1 OS... [more]
RL343_ARATH2.0e-5087.860S ribosomal protein L34-3 OS... [more]
back to top
BLAST of Spo08172.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G26880.13.2e-5492.1Ribosomal protein L34e superfa... [more]
AT1G69620.13.2e-5492.1ribosomal protein L34[more]
AT3G28900.11.1e-5187.8Ribosomal protein L34e superfa... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePRINTSPR01250RIBOSOMALL34coord: 44..54
score: 2.1E-29coord: 66..88
score: 2.1E-29coord: 26..43
score: 2.1E-29coord: 13..26
score: 2.1
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..115
score: 3.1
IPR008195Ribosomal protein L34AePFAMPF01199Ribosomal_L34ecoord: 1..96
score: 2.1
IPR018065Ribosomal protein L34e, conserved sitePROSITEPS01145RIBOSOMAL_L34Ecoord: 15..28
scor
NoneNo IPR availablePANTHERPTHR10759:SF13SUBFAMILY NOT NAMEDcoord: 1..115
score: 3.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006544 glycine metabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0006412 translation
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0071806 protein transmembrane transport
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006414 translational elongation
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003723 RNA binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004073 aspartate-semialdehyde dehydrogenase activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0050661 NADP binding
molecular_function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity
RNA-Seq Expression