Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCATCATCATAATTACAACTTTTATTATTTGACTTTTTTTTTTTTTTTGTTGATATTGATTGCTTAGTCTAACCAAACAAACAGTCACCTTCCTTTAGCCCATTAGAAGAATGTATATAAATTGCACCACTTTGCCTTAAAAATGATCAAAGCCAACACCAAAGTCCACCTCAACAAGGGTTTTTTCTACTAGCTTACTCTTACAGTCTAATAATATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGTAAGGTTTCTACTAATTAGGGCGATAATTATGTTGATCATACTAACTTGTGATTGATTTCTTGTTTATTGTTGATGAACTAATTATAGTTAGTATTTGTGATTTTCTAGGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGTATATTTTCATTCACACATTCTCTATTGTTGTCAGACTGATTTACTATGTTTCAATTCCCTGCTTTTTAGGCCTTGTTTGTTTTATACTTCGCATCAAAAACTGAAACTGAGAGTAATATCAAACATGCCATCAATTTGAATTTATACTAGAAATTAAGTGTGCGTTCTATTCACCTGATTTTCACTTATTTTTCCTGAACTTATCTTAAACATGTCATGTCATCATTGTACACAGCTTAAAGGTCGCATGTAGCGACCTTTATCATTTTCGATCTGAATCTATCTGAACTTGTTTGAACTTATCAAAACTTATTTTAGTTATAGATTGTATTTGGTCAACCCTTATTTTTCATGAACTTATCTTATCTGAACTTATTTTTTCCTGAAATAAGTGGAAATAAGGTGAACAGAACAAAGCATAAGTTTTATAAGTTGACAATAAAATCAAACTGAAAATTGAGAGTAATATCAAACACGCCATCAATTTGAATTTATACTAGAAATTGAGTTTTATAAGTTGGCAATAATATCAAACTGAAAACTGACAGCAATATCAAACTGAAAACTGACAGCAATATCAAACTGACAGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAGTTTGAATGTTTGAGATGCATCCACGAGATGGTCCATGATATACTTCTAGCTTAGGAAGTATATATATTTTCATATGTATACTAATAATTTGTCGTACCACGTGATTTAGTAAGAACGATTGTACGTACGCAGTAGTATATGTAACGTAGTGATTTTTGTTACCACTAATATTATCATGTATGGTAATGCCTAGATACTAATATGTAGCATATGTACGTGTGTAAATATATGAAGTGATAGATATTAGGGAAATGCTATTACTTAATTATCAGCATATAATTGTTGCTGGTCGAGTCTAGCAAAGATATGTACTTGTTATCACAAGGTTATATAAACTTGTGCTGCTTTATTTGTTTGTTATCATAACTCATAAGCTATGAGAATTTTGTAATTGTTGCTTCATTTTATTGACAAA TCATCATCATAATTACAACTTTTATTATTTGACTTTTTTTTTTTTTTTGTTGATATTGATTGCTTAGTCTAACCAAACAAACAGTCACCTTCCTTTAGCCCATTAGAAGAATGTATATAAATTGCACCACTTTGCCTTAAAAATGATCAAAGCCAACACCAAAGTCCACCTCAACAAGGGTTTTTTCTACTAGCTTACTCTTACAGTCTAATAATATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAGTTTGAATGTTTGAGATGCATCCACGAGATGGTCCATGATATACTTCTAGCTTAGGAAGTATATATATTTTCATATGTATACTAATAATTTGTCGTACCACGTGATTTAGTAAGAACGATTGTACGTACGCAGTAGTATATGTAACGTAGTGATTTTTGTTACCACTAATATTATCATGTATGGTAATGCCTAGATACTAATATGTAGCATATGTACGTGTGTAAATATATGAAGTGATAGATATTAGGGAAATGCTATTACTTAATTATCAGCATATAATTGTTGCTGGTCGAGTCTAGCAAAGATATGTACTTGTTATCACAAGGTTATATAAACTTGTGCTGCTTTATTTGTTTGTTATCATAACTCATAAGCTATGAGAATTTTGTAATTGTTGCTTCATTTTATTGACAAA ATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAG MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQERTFMEQRKLADVQLEDYPGSGANNRHTPARP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|902228453|gb|KNA21107.1| (hypothetical protein SOVF_046290 [Spinacia oleracea]) HSP 1 Score: 177.2 bits (448), Expect = 1.300e-41 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|731335001|ref|XP_010678508.1| (PREDICTED: uncharacterized protein LOC104894040 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 106.7 bits (265), Expect = 2.200e-20 Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|645269296|ref|XP_008239934.1| (PREDICTED: uncharacterized protein LOC103338502 [Prunus mume]) HSP 1 Score: 63.2 bits (152), Expect = 2.800e-7 Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|703074802|ref|XP_010089913.1| (hypothetical protein L484_008601 [Morus notabilis]) HSP 1 Score: 61.6 bits (148), Expect = 8.100e-7 Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|823145167|ref|XP_012472456.1| (PREDICTED: uncharacterized protein LOC105789633 [Gossypium raimondii]) HSP 1 Score: 59.7 bits (143), Expect = 3.100e-6 Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQK7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046290 PE=4 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 9.200e-42 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F4Q4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114650 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 1.500e-20 Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: W9QJD5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008601 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 5.600e-7 Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QQW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G097700 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 2.100e-6 Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08177.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 4
BLAST of Spo08177.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo08177.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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