Spo08182 (gene)

Overview
NameSpo08182
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 10938683 .. 10939610 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAGCTGGGGATCCGGGAGCCAAACTGTTTGTTGGGAAAGTGAGGAGCAGTTTCATATTGGCCATATGTCCATGCTTCGGTATTTCTACTGTCCATTCTTCCTACAAATTGATTTTCTTCTACAAATTGATTTTCTTTTATCCTTTAATAAGTTGTAATTCTGGAGATAGATATCAGGTTACTGGAGATACATTTTGTGCCATTTGAGTGATGATTGTTGCTGGAGATAGATATCAAGTTACTGGATGATTTAGTGAGTTATTGGATTTTGCAGGAAAGCAGTGATGCTCTAGACTGATTTGGTGTGTTATTGGAGTTCGTGTTTATTTTACAGGATGCATGTGTATGTGATGACTAATTAGTTCAAAAGAAACTAATTTCTTTGATTGATTAAGTGTTCCTAAGGTTTAATTCAGTTAGTTTGTTATGAATTATGTTTCTTCTGTGCAGACATAGCACCAGTAAAAAATCCAGCCAAACTACAAAAAAAAAAGACCACCTGCAGACAGAGACAGACAGCAACAGCAACAGCAACAGAGAATAGAGAACGGCAACTGAGTGATTTTTCAAGGGATTTTGACTTTTCAGTAGTACTGTATGGACCTTTACTTTATTTAAACGGAACAATTGTTTTGTTTTTCTTAGTTTGATTACGAATTAATTATGAATATTGAATTATTAGTGTTATGGAATTAACTATTTAGATCCCGTGAAAATGCACACGGTGTAAAATTTTTCTTTAGATGAACTTTGTGAACAAATTTTGTGGCATGTTATTTTTGGTGATTAGTTGCAATAAAATAATTTAAAGTTCTGAAATATCTCGCGTGCATATAAGACCCCTCATGATTGCTTTAATGAGATTTAATATATTACTCATAACAACAAGACGCGTCTTTCTTTTAAGGAGCTAATTTCCTAA

mRNA sequence

ATGGCAGAAGCTGGGGATCCGGGAGCCAAACTGTTTGTTGGGAAAGTGAGGAGCAGTTTCATATTGGCCATATGTCCATGCTTCGACATAGCACCAGTAAAAAATCCAGCCAAACTACAAAAAAAAAAGACCACCTGCAGACAGAGACAGACAGCAACAGCAACAGCAACAGAGAATAGAGAACGGCAACTGAGTGATTTTTCAAGGGATTTTGACTTTTCAGTAGTACTGTATGGACCTTTACTTTATTTAAACGGAACAATTGTTTTGTTTTTCTTAGTTTGATTACGAATTAATTATGAATATTGAATTATTAGTGTTATGGAATTAACTATTTAGATCCCGTGAAAATGCACACGGTGTAAAATTTTTCTTTAGATGAACTTTGTGAACAAATTTTGTGGCATGTTATTTTTGGTGATTAGTTGCAATAAAATAATTTAAAGTTCTGAAATATCTCGCGTGCATATAAGACCCCTCATGATTGCTTTAATGAGATTTAATATATTACTCATAACAACAAGACGCGTCTTTCTTTTAAGGAGCTAATTTCCTAA

Coding sequence (CDS)

ATGGCAGAAGCTGGGGATCCGGGAGCCAAACTGTTTGTTGGGAAAGTGAGGAGCAGTTTCATATTGGCCATATGTCCATGCTTCGACATAGCACCAGTAAAAAATCCAGCCAAACTACAAAAAAAAAAGACCACCTGCAGACAGAGACAGACAGCAACAGCAACAGCAACAGAGAATAGAGAACGGCAACTGAGTGATTTTTCAAGGGATTTTGACTTTTCAGTAGTACTGTATGGACCTTTACTTTATTTAAACGGAACAATTGTTTTGTTTTTCTTAGTTTGA

Protein sequence

MAEAGDPGAKLFVGKVRSSFILAICPCFDIAPVKNPAKLQKKKTTCRQRQTATATATENRERQLSDFSRDFDFSVVLYGPLLYLNGTIVLFFLV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08182.1Spo08182.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo08182.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08182.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08182.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08182.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0045010 actin nucleation
biological_process GO:0048451 petal formation
biological_process GO:0048453 sepal formation
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0006457 protein folding
biological_process GO:0016573 histone acetylation
biological_process GO:0006364 rRNA processing
biological_process GO:0048767 root hair elongation
biological_process GO:0009561 megagametogenesis
biological_process GO:0016998 cell wall macromolecule catabolic process
biological_process GO:0007020 microtubule nucleation
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0046838 phosphorylated carbohydrate dephosphorylation
biological_process GO:0006281 DNA repair
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016049 cell growth
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006598 polyamine catabolic process
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0005983 starch catabolic process
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0008152 metabolic process
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0009698 phenylpropanoid metabolic process
biological_process GO:0019530 taurine metabolic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0061025 membrane fusion
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0000902 cell morphogenesis
biological_process GO:0071554 cell wall organization or biogenesis
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0007267 cell-cell signaling
biological_process GO:0042398 cellular modified amino acid biosynthetic process
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0016020 membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0044424 intracellular part
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000785 chromatin
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0044446 intracellular organelle part
cellular_component GO:0005829 cytosol
cellular_component GO:0005884 actin filament
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0048046 apoplast
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0050308 sugar-phosphatase activity
molecular_function GO:2001070 starch binding
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005179 hormone activity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0003779 actin binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0047800 cysteamine dioxygenase activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0019003 GDP binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo218330.79Barchart | Table
Spo244300.76Barchart | Table
Spo232370.75Barchart | Table
Spo181300.75Barchart | Table
Spo189430.75Barchart | Table
Spo041040.74Barchart | Table
Spo137830.74Barchart | Table
Spo255730.73Barchart | Table
Spo068110.73Barchart | Table
Spo084350.73Barchart | Table
Spo104440.72Barchart | Table
Spo192100.71Barchart | Table
Spo052690.71Barchart | Table
Spo182230.71Barchart | Table
Spo256330.71Barchart | Table
Spo162180.71Barchart | Table
Spo191230.71Barchart | Table
Spo236860.71Barchart | Table
Spo022310.70Barchart | Table
Spo105680.70Barchart | Table
Spo168040.70Barchart | Table
Spo228960.70Barchart | Table
Spo145890.70Barchart | Table
Spo002830.70Barchart | Table
Spo263550.70Barchart | Table
Spo134920.70Barchart | Table
Spo232860.70Barchart | Table
Spo233800.70Barchart | Table
Spo053070.69Barchart | Table
Spo173860.69Barchart | Table
Spo114490.69Barchart | Table
Spo196900.69Barchart | Table
Spo172090.69Barchart | Table
Spo168440.69Barchart | Table
Spo248410.69Barchart | Table
Spo165840.69Barchart | Table
Spo216000.69Barchart | Table
Spo146300.69Barchart | Table
Spo093870.69Barchart | Table
Spo272390.69Barchart | Table
Spo020690.69Barchart | Table
Spo182850.69Barchart | Table
Spo081470.69Barchart | Table
Spo144030.69Barchart | Table
Spo005260.68Barchart | Table
Spo002050.68Barchart | Table
Spo065800.68Barchart | Table
Spo070790.68Barchart | Table
Spo078700.68Barchart | Table
Spo262140.68Barchart | Table
Spo009430.68Barchart | Table
Spo035050.68Barchart | Table
Spo272030.68Barchart | Table
Spo144520.68Barchart | Table
Spo163610.68Barchart | Table
Spo007930.67Barchart | Table
Spo121300.67Barchart | Table
Spo131610.67Barchart | Table
Spo169090.67Barchart | Table
Spo026480.67Barchart | Table
Spo092140.67Barchart | Table
Spo024780.67Barchart | Table
Spo268580.67Barchart | Table
Spo041420.67Barchart | Table
Spo056400.67Barchart | Table
Spo237570.67Barchart | Table
Spo039840.67Barchart | Table
Spo224360.67Barchart | Table
Spo221670.67Barchart | Table
Spo190350.67Barchart | Table
Spo245900.67Barchart | Table
Spo249350.67Barchart | Table
Spo011870.67Barchart | Table
Spo199360.67Barchart | Table
Spo108950.67Barchart | Table
Spo115090.67Barchart | Table
Spo273520.66Barchart | Table
Spo006530.66Barchart | Table
Spo011960.66Barchart | Table
Spo015110.66Barchart | Table
Spo020650.66Barchart | Table
Spo027180.66Barchart | Table
Spo028950.66Barchart | Table
Spo034160.66Barchart | Table
Spo038650.66Barchart | Table
Spo044330.66Barchart | Table
Spo055290.66Barchart | Table
Spo056660.66Barchart | Table
Spo063270.66Barchart | Table
Spo063350.66Barchart | Table
Spo091450.66Barchart | Table
Spo093670.66Barchart | Table
Spo096840.66Barchart | Table
Spo105120.66Barchart | Table
Spo112030.66Barchart | Table
Spo113840.66Barchart | Table
Spo132810.66Barchart | Table
Spo142400.66Barchart | Table
Spo149950.66Barchart | Table
Spo161700.66Barchart | Table
Spo179790.66Barchart | Table
Spo198250.66Barchart | Table
Spo209300.66Barchart | Table
Spo001730.66Barchart | Table
Spo240650.65Barchart | Table
Spo243350.65Barchart | Table
Spo214220.65Barchart | Table
Spo211580.65Barchart | Table
Spo209120.65Barchart | Table
Spo204970.65Barchart | Table
Spo202640.65Barchart | Table
Spo116880.65Barchart | Table
Spo105000.65Barchart | Table
Spo085220.65Barchart | Table
Spo085210.65Barchart | Table
Spo037350.65Barchart | Table
Spo018010.65Barchart | Table
Spo233820.65Barchart | Table