Spo08183 (gene) | SpinachBase

Overview


Name	Spo08183
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	(Type II chlorophyll a /b-binding protein) (Precursor)
Location	chr5 : 10968377 .. 10969799 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAGTTACAACACAGGCATCGATCGCCGGATTCCGTCCATGCGCATCGAAACCGAGGTTTTTGACTGGTGTTCCAGGTAAGCTTAACAAGGAATCAAGTGGTGTTAGGCTACCATCAACTTCATCAACTACTTCTTTCAAGGTTGAAGCTAAGAAGGGTGAATGGTTGCCTGGTTTGGCTTCTCCTGGCTACCTTACTGGCAGGTAATTACACTTTTATCCCCCTTTTTTTTAATGTAAAATCTTTAACTTATTATTAGTGGATCAATATTTCTAATCCAATAAAAATATAACCATATAGAGTAACAGAGGAATACTAGTTTAGAATGTCCGGAAAAAGTTCCTGGCTTTCCTAAAGAAATTTAAGTGATGATTAATGATTGAGTTTTCTACTATAACCCTTATTTAATTATTTAAATTATGTGATGGGATTCACACAATTATTATGCACATATTTGTGTAGTATCACATGATCCTATACTTTGTATAGTTATATTTGAGGTTTGAGACAATGTAAGAACTGATGTCGAACTTGGTTAATGTGATTAGCTATGCTAAAATCATGAATGAAACTGAAAATTGAGAATTGAGAATTGAGAATTGAGAATTGTGGCTTTTGTTTAATCACCCCCAATTGATTGAGATGGAGAAAAGCAAATGACATTTTAGTGAAGTAAAACAGACCTTTATGTATAAATTATCTACTAATTGTAAAGAGAAGTTGACACTTTTCTTTGTGTACCATATTATGAACCATACAGTCTTCCAGGAGACAATGGATTTGATCCCTTGGCATTAGCAGAGGACCCAGAAAACTTGAGGTGGTTTGTGCAAGCCGAGCTGGTGAATGGGCGGTGGGCGATGCTTGGTGTTGCCGGAATGTTGCTACCGGAGGTGTTCACAAGTATCGGAATCATTGACGTACCAAAATGGTATGATGCAGGGAAATCAGAGTACTTCGCATCATCATCAACCTTGTTTGTGATTGAATTCATCTTGTTCCATTATGTTGAGATAAGAAGATGGCAAGACATTAAGAACCCTGGTTGTGTTAACCAAGACCCTATTTTCAAGCAATACAGTTTGCCTCCTAATGAATGTGGTTACCCTGGTGGCATATTTAACCCTCTCAACTTTGCACCTACTACTGAGGCCAAGGAGAAAGAGCTTGCTAATGGTAATTACTAATTAGTTAACCTTAATTACAATCTGCAACTCTTTTTCTTTTCTTTAATTACCTCTTACTGATTTTTACTGTGTTTTTTTGTTGTAATTTGGCAGGGAGATTGGCTATGTTGGCATTCTTAGGGTTCATTGTGCAACACAATGTGACTGGAAAGGGGCCTTTTGACAACCTTCAGCAGCATCTATCAGACCCATGGCACAACACCATTATCCAGACATTTGGTGGTAACTAA

mRNA sequence

ATGGCAGCAGTTACAACACAGGCATCGATCGCCGGATTCCGTCCATGCGCATCGAAACCGAGGTTTTTGACTGGTGTTCCAGGTAAGCTTAACAAGGAATCAAGTGGTGTTAGGCTACCATCAACTTCATCAACTACTTCTTTCAAGGTTGAAGCTAAGAAGGGTGAATGGTTGCCTGGTTTGGCTTCTCCTGGCTACCTTACTGGCAGTCTTCCAGGAGACAATGGATTTGATCCCTTGGCATTAGCAGAGGACCCAGAAAACTTGAGGTGGTTTGTGCAAGCCGAGCTGGTGAATGGGCGGTGGGCGATGCTTGGTGTTGCCGGAATGTTGCTACCGGAGGTGTTCACAAGTATCGGAATCATTGACGTACCAAAATGGTATGATGCAGGGAAATCAGAGTACTTCGCATCATCATCAACCTTGTTTGTGATTGAATTCATCTTGTTCCATTATGTTGAGATAAGAAGATGGCAAGACATTAAGAACCCTGGTTGTGTTAACCAAGACCCTATTTTCAAGCAATACAGTTTGCCTCCTAATGAATGTGGTTACCCTGGTGGCATATTTAACCCTCTCAACTTTGCACCTACTACTGAGGCCAAGGAGAAAGAGCTTGCTAATGGGAGATTGGCTATGTTGGCATTCTTAGGGTTCATTGTGCAACACAATGTGACTGGAAAGGGGCCTTTTGACAACCTTCAGCAGCATCTATCAGACCCATGGCACAACACCATTATCCAGACATTTGGTGGTAACTAA

Coding sequence (CDS)

ATGGCAGCAGTTACAACACAGGCATCGATCGCCGGATTCCGTCCATGCGCATCGAAACCGAGGTTTTTGACTGGTGTTCCAGGTAAGCTTAACAAGGAATCAAGTGGTGTTAGGCTACCATCAACTTCATCAACTACTTCTTTCAAGGTTGAAGCTAAGAAGGGTGAATGGTTGCCTGGTTTGGCTTCTCCTGGCTACCTTACTGGCAGTCTTCCAGGAGACAATGGATTTGATCCCTTGGCATTAGCAGAGGACCCAGAAAACTTGAGGTGGTTTGTGCAAGCCGAGCTGGTGAATGGGCGGTGGGCGATGCTTGGTGTTGCCGGAATGTTGCTACCGGAGGTGTTCACAAGTATCGGAATCATTGACGTACCAAAATGGTATGATGCAGGGAAATCAGAGTACTTCGCATCATCATCAACCTTGTTTGTGATTGAATTCATCTTGTTCCATTATGTTGAGATAAGAAGATGGCAAGACATTAAGAACCCTGGTTGTGTTAACCAAGACCCTATTTTCAAGCAATACAGTTTGCCTCCTAATGAATGTGGTTACCCTGGTGGCATATTTAACCCTCTCAACTTTGCACCTACTACTGAGGCCAAGGAGAAAGAGCTTGCTAATGGGAGATTGGCTATGTTGGCATTCTTAGGGTTCATTGTGCAACACAATGTGACTGGAAAGGGGCCTTTTGACAACCTTCAGCAGCATCTATCAGACCCATGGCACAACACCATTATCCAGACATTTGGTGGTAACTAA

Protein sequence

MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSDPWHNTIIQTFGGN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo08183.1	Spo08183.1	mRNA

Homology

[Close]

BLAST of Spo08183.1 vs. NCBI nr
Match: gi|902206029|gb|KNA15351.1| (hypothetical protein SOVF_099030 [Spinacia oleracea])

HSP 1 Score: 533.9 bits (1374), Expect = 1.500e-148
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG
Sbjct: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG
Sbjct: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP
Sbjct: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD
Sbjct: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTIIQTFGGN
Sbjct: 241 PWHNTIIQTFGGN 253

[Close]

BLAST of Spo08183.1 vs. NCBI nr
Match: gi|731334970|ref|XP_010678492.1| (PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 494.2 bits (1271), Expect = 1.400e-136
Identity = 237/253 (93.68%), Postives = 239/253 (94.47%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MAAVTTQASIAGFRPCASK RFLTG PGKLNKE  GVRLPSTSST S KVEAKKGEWLPG
Sbjct: 1   MAAVTTQASIAGFRPCASKSRFLTGAPGKLNKEC-GVRLPSTSSTNSLKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASP YL GSLPGDNGFDPLALAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 61  LASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VPKWYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPP
Sbjct: 121 IINVPKWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NE GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL QHLSD
Sbjct: 181 NEVGYPGGIFNPLNFAPTAEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTIIQTFGGN
Sbjct: 241 PWHNTIIQTFGGN 252

[Close]

BLAST of Spo08183.1 vs. NCBI nr
Match: gi|1009132600|ref|XP_015883459.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 468.8 bits (1205), Expect = 6.100e-129
Identity = 223/253 (88.14%), Postives = 233/253 (92.09%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MA VTTQAS A FRPCASK RFL+G  GKL+++ S V+  +T S TSFKVEAKKGEWLPG
Sbjct: 1   MATVTTQASAAVFRPCASKSRFLSGSSGKLSRDLS-VKPSATPSATSFKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           L SPGYL GSLPGDNGFDPL LAEDPENL+W+VQAELVNGRWAMLGV GMLLPEV TSIG
Sbjct: 61  LPSPGYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNGRWAMLGVTGMLLPEVLTSIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VPKWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP
Sbjct: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NECGYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL QHLSD
Sbjct: 181 NECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTIIQTF GN
Sbjct: 241 PWHNTIIQTFRGN 252

[Close]

BLAST of Spo08183.1 vs. NCBI nr
Match: gi|702258189|ref|XP_010030046.1| (PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 465.7 bits (1197), Expect = 5.200e-128
Identity = 222/252 (88.10%), Postives = 229/252 (90.87%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MA VTTQAS A FRPC+SK RFLTG  GKLN+E S   LPSTSS  S KVEAKKGEWLPG
Sbjct: 42  MATVTTQASAAVFRPCSSKTRFLTGSSGKLNREVSIKALPSTSSPASLKVEAKKGEWLPG 101

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASPGYL GSLPGDNGFDPL LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 102 LASPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 161

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VP WYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPP
Sbjct: 162 IINVPAWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 221

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NE GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQHNVTGKGPF+NL QHLSD
Sbjct: 222 NEVGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLVQHLSD 281

Query: 241 PWHNTIIQTFGG 253
           PWHNTI+QT  G
Sbjct: 282 PWHNTIVQTLRG 293

[Close]

BLAST of Spo08183.1 vs. NCBI nr
Match: gi|659105939|ref|XP_008453211.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo])

HSP 1 Score: 465.7 bits (1197), Expect = 5.200e-128
Identity = 220/253 (86.96%), Postives = 233/253 (92.09%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MA VTTQAS A FRPCA++ RFL+G  GKL++  S V+  S SS++SFKVEAKKGEWLPG
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLS-VKPVSASSSSSFKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           L SP YL GSLPGDNGFDPL LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 61  LPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+ P+WYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP
Sbjct: 121 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NECGYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL QH+SD
Sbjct: 181 NECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTI+QTFGGN
Sbjct: 241 PWHNTIVQTFGGN 252

[Close]

BLAST of Spo08183.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R772_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_099030 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 1.100e-148
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG
Sbjct: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG
Sbjct: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP
Sbjct: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD
Sbjct: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTIIQTFGGN
Sbjct: 241 PWHNTIIQTFGGN 253

[Close]

BLAST of Spo08183.1 vs. UniProtKB/TrEMBL
Match: Q7XAC6_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris GN=cab11 PE=2 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 9.500e-137
Identity = 237/253 (93.68%), Postives = 239/253 (94.47%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MAAVTTQASIAGFRPCASK RFLTG PGKLNKE  GVRLPSTSST S KVEAKKGEWLPG
Sbjct: 1   MAAVTTQASIAGFRPCASKSRFLTGAPGKLNKEC-GVRLPSTSSTNSLKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASP YL GSLPGDNGFDPLALAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 61  LASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VPKWYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPP
Sbjct: 121 IINVPKWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NE GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL QHLSD
Sbjct: 181 NEVGYPGGIFNPLNFAPTAEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTIIQTFGGN
Sbjct: 241 PWHNTIIQTFGGN 252

[Close]

BLAST of Spo08183.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CFK8_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114540 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 9.500e-137
Identity = 237/253 (93.68%), Postives = 239/253 (94.47%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MAAVTTQASIAGFRPCASK RFLTG PGKLNKE  GVRLPSTSST S KVEAKKGEWLPG
Sbjct: 1   MAAVTTQASIAGFRPCASKSRFLTGAPGKLNKEC-GVRLPSTSSTNSLKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASP YL GSLPGDNGFDPLALAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 61  LASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VPKWYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPP
Sbjct: 121 IINVPKWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NE GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL QHLSD
Sbjct: 181 NEVGYPGGIFNPLNFAPTAEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTIIQTFGGN
Sbjct: 241 PWHNTIIQTFGGN 252

[Close]

BLAST of Spo08183.1 vs. UniProtKB/TrEMBL
Match: A0A059CZN0_EUCGR (Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_B00523 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 3.600e-128
Identity = 222/252 (88.10%), Postives = 229/252 (90.87%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MA VTTQAS A FRPC+SK RFLTG  GKLN+E S   LPSTSS  S KVEAKKGEWLPG
Sbjct: 42  MATVTTQASAAVFRPCSSKTRFLTGSSGKLNREVSIKALPSTSSPASLKVEAKKGEWLPG 101

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASPGYL GSLPGDNGFDPL LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 102 LASPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 161

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VP WYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPP
Sbjct: 162 IINVPAWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 221

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NE GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQHNVTGKGPF+NL QHLSD
Sbjct: 222 NEVGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLVQHLSD 281

Query: 241 PWHNTIIQTFGG 253
           PWHNTI+QT  G
Sbjct: 282 PWHNTIVQTLRG 293

[Close]

BLAST of Spo08183.1 vs. UniProtKB/TrEMBL
Match: A9PIX4_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 1.400e-127
Identity = 218/253 (86.17%), Postives = 228/253 (90.12%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MA V+TQAS A FRPCA K RFL G P KLN+E S    P  SS+ SFKVEAKKGEWLPG
Sbjct: 1   MATVSTQASAAVFRPCAYKSRFLAGAPSKLNRELS--IKPMASSSPSFKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           L SP YL GSLPGDNGFDPL LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 61  LPSPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+ P+WYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP
Sbjct: 121 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
           NECGYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF++QHNVTGKGPFDNL QH+SD
Sbjct: 181 NECGYPGGIFNPLNFAPTIEAKEKELANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHISD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTI+QTF GN
Sbjct: 241 PWHNTIVQTFSGN 251

[Close]

BLAST of Spo08183.1 vs. ExPASy Swiss-Prot
Match: CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 1.800e-125
Identity = 211/250 (84.40%), Postives = 226/250 (90.40%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MA VTT AS + FRPC SKPRFLTG  G+LN++ S   + S++ T+SFKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASP YLTGSL GDNGFDPL LAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
            E GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQHNVTGKGPF+NL QHLSD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTIIQTF 251
           PWHNTI+QTF
Sbjct: 241 PWHNTIVQTF 250

[Close]

BLAST of Spo08183.1 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 1.700e-123
Identity = 214/253 (84.58%), Postives = 221/253 (87.35%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MA VTTQAS A F PC  K RFL G  GKLN+     R    S + SFKVEAKKGEWLPG
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNR-GVAFRPVGCSPSASFKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASPGYLTGSLPGDNGFDPL LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG
Sbjct: 61  LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VPKWY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPG VNQDPIFKQYSLP 
Sbjct: 121 IINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPA 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
            E GYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFI+QHNVTGKGPFDNL QH+SD
Sbjct: 181 GEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISD 240

Query: 241 PWHNTIIQTFGGN 254
           PWHNTI+QT GGN
Sbjct: 241 PWHNTIVQTLGGN 252

[Close]

BLAST of Spo08183.1 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.800e-88
Identity = 163/233 (69.96%), Postives = 180/233 (77.25%), Query Frame = 1


		  
Query: 21  RFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPL 80
           RF T VP   +  +SG    S  ST        KG WLPGL SP YL GSL GDNGFDPL
Sbjct: 6   RFRTRVPP--SPAASG----SPRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPL 65

Query: 81  ALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIDVPKWYD-AGKSEYFASS 140
           ALAEDPE+LRWFVQA++VNGRWAMLGVAGML+PEV T  G+++ P+W    GK  YFASS
Sbjct: 66  ALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASS 125

Query: 141 STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTT 200
           ST   +  +   YVEIRRWQDIKNPG VNQDPIFK YSLPP+ECGYPG +FNPLNFAP  
Sbjct: 126 STALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-L 185

Query: 201 EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSDPWHNTIIQTFGG 253
           E KEKELANGRLAMLAFLGF+VQHNV GKGPF+NLQQHL+DPWHNTIIQT  G
Sbjct: 186 ENKEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230

[Close]

BLAST of Spo08183.1 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.900e-61
Identity = 121/241 (50.21%), Postives = 151/241 (62.66%), Query Frame = 1


		  
Query: 18  SKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGE--WLPGLASPGYLTGSLPGDN 77
           +K  FL G   +++K S+    P+  S T+  V A      W PG   P +L GSLPGD 
Sbjct: 30  TKASFLGGRRLRVSKYST---TPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDF 89

Query: 78  GFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIDVPKWYDAGKSEY 137
           GFDPL LA DPE+LRW  QAELV+ RWAMLG AG+ +PE+ T IGI++ P WY AG+ EY
Sbjct: 90  GFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY 149

Query: 138 FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGI-FNPLN 197
           F  ++TLF++E +L  + E RRW DI  PGCVN DPIF    L   + GYPGG+ F+PL 
Sbjct: 150 FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 209

Query: 198 F-----APTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSDPWHNTIIQT 251
           +     A   E + KE+ NGRLAMLA +G   QH  TG GP DNL  HL+DP H TI   
Sbjct: 210 WGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAA 267

[Close]

BLAST of Spo08183.1 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.600e-60
Identity = 117/240 (48.75%), Postives = 149/240 (62.08%), Query Frame = 1


		  
Query: 17  ASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPGLASPGYLTGSLPGDNG 76
           A+K  FL G   +++K  + V   S +  ++   +  +  W PG   P +L GSLPGD G
Sbjct: 29  ATKASFLGGKRLRVSKFIAPVGSRSVA-VSAVAADPDRPLWFPGSTPPEWLDGSLPGDFG 88

Query: 77  FDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIDVPKWYDAGKSEYF 136
           FDPL L  DPE+L+W  QAELV+ RWAMLG AG+ +PE  T IG+++ P WY AG+ EYF
Sbjct: 89  FDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYF 148

Query: 137 ASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGI-FNPLNF 196
             ++TLFVIE +L  + E RRW DI  PGCVN DPIF    L   + GYPGG+ F+PL +
Sbjct: 149 TDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 208

Query: 197 -----APTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSDPWHNTIIQTF 251
                A   E + KE+ NGRLAMLA +G   QH  TG GP DNL  HL+DP H TI   F
Sbjct: 209 GSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267

[Close]

BLAST of Spo08183.1 vs. TAIR (Arabidopsis)
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 449.9 bits (1156), Expect = 1.000e-126
Identity = 211/250 (84.40%), Postives = 226/250 (90.40%), Query Frame = 1


		  
Query: 1   MAAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPG 60
           MA VTT AS + FRPC SKPRFLTG  G+LN++ S   + S++ T+SFKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 120
           LASP YLTGSL GDNGFDPL LAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFT IG
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPP 180
           II+VP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSD 240
            E GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQHNVTGKGPF+NL QHLSD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTIIQTF 251
           PWHNTI+QTF
Sbjct: 241 PWHNTIVQTF 250

[Close]

BLAST of Spo08183.1 vs. TAIR (Arabidopsis)
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 231.9 bits (590), Expect = 4.400e-61
Identity = 117/243 (48.15%), Postives = 149/243 (61.32%), Query Frame = 1


		  
Query: 18  SKPRFLTGVPGKLNKESSGVRLPSTS----STTSFKVEAKKGEWLPGLASPGYLTGSLPG 77
           S P FL G   +L K+   + +P+ S    S  +   +  +  W PG   P +L GSLPG
Sbjct: 15  SSPSFLGGKKLRLKKK---LTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPG 74

Query: 78  DNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIDVPKWYDAGKS 137
           D GFDPL L+ DP++L+W VQAE+V+ RWAMLG AG+ +PE  T IGI++ P WY AG+ 
Sbjct: 75  DFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQ 134

Query: 138 EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGI-FNP 197
           EYF   +TLFV+E IL  + E RRW DI  PG VN DP+F    L   + GYPGG+ F+P
Sbjct: 135 EYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDP 194

Query: 198 LNF-----APTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSDPWHNTII 251
           L +     A   E + KE+ NGRLAMLA +G   QH  TG GP DNL  HL+DP H TI 
Sbjct: 195 LGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 254

[Close]

BLAST of Spo08183.1 vs. TAIR (Arabidopsis)
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5)

HSP 1 Score: 211.5 bits (537), Expect = 6.200e-55
Identity = 105/209 (50.24%), Postives = 141/209 (67.46%), Query Frame = 1


		  
Query: 50  VEAKKGEWLPGLASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAG 109
           V  ++  WLPGL  P YL G+L GD GFDPL L EDPE+L+W+VQAELV+ R+AMLGVAG
Sbjct: 42  VAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAG 101

Query: 110 MLLPEVFTSIGIIDVPKWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVN 169
           +L  ++  + GI ++P WY+AG  ++ FAS+ TL V++F+L  + E +R+ D  +PG   
Sbjct: 102 ILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQA 161

Query: 170 QDPIF---KQYSLPPNECGYPGG-IFNPLNFAPTTEA----KEKELANGRLAMLAFLGFI 229
           ++  F    + +L   E GYPGG + NPL  A   +     K KE+ NGRLAM+A LGF 
Sbjct: 162 KEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFF 221

Query: 230 VQHNVTGKGPFDNLQQHLSDPWHNTIIQT 250
           VQ +VT  GP DNL +HLS+PWH TIIQT
Sbjct: 222 VQASVTHTGPIDNLVEHLSNPWHKTIIQT 250

[Close]

BLAST of Spo08183.1 vs. TAIR (Arabidopsis)
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6)

HSP 1 Score: 204.5 bits (519), Expect = 7.600e-53
Identity = 93/200 (46.50%), Postives = 121/200 (60.50%), Query Frame = 1


		  
Query: 57  WLPGLASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 116
           W PG + P +L GSLPGD GFDPL L  DP+ L+WF QAEL++ RWAML V G+++PE  
Sbjct: 68  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127

Query: 117 TSIGIIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQY 176
             +G I+   WYDAG  EYFA S+TLFV + +L  + E RRW D+  PG V+ +P +   
Sbjct: 128 ERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHK 187

Query: 177 SLPPNECGYPGGIFNPLNF------APTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 236
             P  + GYPGG++            P    + KE+ NGRLAMLAFLGF  Q   T + P
Sbjct: 188 VNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDP 247

Query: 237 FDNLQQHLSDPWHNTIIQTF 251
            +NL  HL+DP H  +   F
Sbjct: 248 IENLMAHLADPGHCNVFSAF 267

[Close]

BLAST of Spo08183.1 vs. TAIR (Arabidopsis)
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3)

HSP 1 Score: 160.6 bits (405), Expect = 1.300e-39
Identity = 108/273 (39.56%), Postives = 137/273 (50.18%), Query Frame = 1


		  
Query: 2   AAVTTQASIAGFRPCASKPRFLTGVPGKLNKESSGVRLPSTSSTTSFKVEAKKGEWLPGL 61
           ++V T   I G +P AS  +          K+SS V     ++T   K  A +  W    
Sbjct: 13  SSVQTARQIFGSKPVASASQ----------KKSSFV--VKAAATPPVKQGANRPLWFASS 72

Query: 62  ASPGYLTGSLPGDNGFDPLALAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEV 121
            S  YL GSLPGD GFDPL L+ DPE        RW    E++NGR+AMLG AG + PE+
Sbjct: 73  QSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 132

Query: 122 FTSIGIIDVPK---WYD------AGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGC 181
               G+I       W+       AG   Y+A + TLFV+E  L  + E RR QD  NPG 
Sbjct: 133 LGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGS 192

Query: 182 VNQDPIFKQYSLP-------PNECGYPGG-IFNPLNFAPTT----EAKEKELANGRLAML 241
           +      KQY L             YPGG  FNPL F        E K KE+ NGRLAML
Sbjct: 193 MG-----KQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 252

Query: 242 AFLGFIVQHNVTGKGPFDNLQQHLSDPWHNTII 248
           A LG+ +Q  VTG GP+ NL  HL+DP +N ++
Sbjct: 253 AILGYFIQGLVTGVGPYQNLLDHLADPVNNNVL 267

The following BLAST results are available for this feature:

BLAST of Spo08183.1 vs. NCBI nr
BLAST of Spo08183.1 vs. UniProtKB/TrEMBL
BLAST of Spo08183.1 vs. ExPASy Swiss-Prot
BLAST of Spo08183.1 vs. TAIR (Arabidopsis)

BLAST of Spo08183.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902206029\|gb\|KNA15351.1\|	1.5e-148	100.	hypothetical protein SOVF_0990...	[more]
gi\|731334970\|ref\|XP_010678492.1\|	1.4e-136	93.6	PREDICTED: chlorophyll a-b bin...	[more]
gi\|1009132600\|ref\|XP_015883459.1\|	6.1e-129	88.1	PREDICTED: chlorophyll a-b bin...	[more]
gi\|702258189\|ref\|XP_010030046.1\|	5.2e-128	88.1	PREDICTED: chlorophyll a-b bin...	[more]
gi\|659105939\|ref\|XP_008453211.1\|	5.2e-128	86.9	PREDICTED: chlorophyll a-b bin...	[more]

BLAST of Spo08183.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R772_SPIOL	1.1e-148	100.	Chlorophyll a-b binding protei...	[more]
Q7XAC6_BETVU	9.5e-137	93.6	Chlorophyll a-b binding protei...	[more]
A0A0J8CFK8_BETVU	9.5e-137	93.6	Chlorophyll a-b binding protei...	[more]
A0A059CZN0_EUCGR	3.6e-128	88.1	Chlorophyll a-b binding protei...	[more]
A9PIX4_9ROSI	1.4e-127	86.1	Chlorophyll a-b binding protei...	[more]

BLAST of Spo08183.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CA4_ARATH	1.8e-125	84.4	Chlorophyll a-b binding protei...	[more]
CB24_PEA	1.7e-123	84.5	Chlorophyll a-b binding protei...	[more]
CB120_HORVU	1.8e-88	69.9	Chlorophyll a-b binding protei...	[more]
CB12_SOLLC	1.9e-61	50.2	Chlorophyll a-b binding protei...	[more]
CB12_PETHY	1.6e-60	48.7	Chlorophyll a-b binding protei...	[more]

BLAST of Spo08183.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G47470.1	1.0e-126	84.4	light-harvesting chlorophyll-p...	[more]
AT3G61470.1	4.4e-61	48.1	photosystem I light harvesting...	[more]
AT1G45474.1	6.2e-55	50.2	photosystem I light harvesting...	[more]
AT1G19150.1	7.6e-53	46.5	photosystem I light harvesting...	[more]
AT1G61520.1	1.3e-39	39.5	photosystem I light harvesting...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..250 score: 1.4E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 64..223 score: 3.8
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	1.10.3460.10		coord: 56..249 score: 2.1
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 54..250 score: 6.28
None	No IPR available	PANTHER	PTHR21649:SF17	CHLOROPHYLL A-B BINDING PROTEIN 4, CHLOROPLASTIC	coord: 1..250 score: 1.4E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16925	0.69	Barchart \| Table