Spo08190 (gene) | SpinachBase

Overview


Name	Spo08190
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	NDH dependent flow 6 protein
Location	chr5 : 11052640 .. 11054701 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAAACAAATAAAATAGCTTTGGATGCACACGTATAATTAACTAACGGTGGTATTTTAGGAAATTTCACTAACTAATTAATTACATTCCAAAAGGTAAGGGAAACATGAGTGGAAGTGGTTGTCTTATCCAATTCCCTCTCATGAAACAACACAACTTGGTCACATGAACACCAAACTACATTGTTGAACAAAAAATGGTTGAGGCTATGATGAGTTTCACCTTATCCAAGCCCATATCTCCACTCCACTCACTAAATTCAAACACCATTAACAACAACTCTCCTAAATTAGTGGTATTATGTAATATCCCCCTCTTTGTAACATGACTTATAATTACCAATTGAAACACTTCAATTAACAACTGTTTTATTGTTAACTTTTGCAGCTTAAACCATGTTCAATCTCCAACTTCGGCAACAACCAGGTAAATTTAGAAAGACTTGAACTTTGTTAATTATACTATATATGGTAAATGAATCCAATATAATATGCTTATGGTTTGATTTGAAAAAAGGTTGAAAAAAGAGGAAGGGGTAATGCTGGGAAAGTAAAAGTTAGTTTAGCAGAATGGCCTTTGATGGCAGTTCTAGTTGAGCATGTTGAAGGACAAAGAGATCTCATTACCCACAAATCAATTTGGCATCTTAGTGATGCTGCCATCAAGAATGTTTGTAAGTTCTTTCTTATCGATCTATTACAACATTTGGAGTTTCACGCTCGTTAATGCACAAATTAATTAGAGTTTAATTAATATTTGAATTTTGTTTGGTTTTGAATGGCAGACCTTTTCTATATGATGTTCACTTGTTGGGGATGTTGTGTCTTTGGTGCTGCTAAAGTAAGTATTCTTCTATTCTTTTACTTATTTGTATTACATGTTATGTTCAATACTTAATCCTTTTTACTCTACGTCAATTGCAAGAGTGTGTTCTGTTCGACTTATAGAAATTGGAATTAAGTGTAACGTAAATATAAACATGAGTTATGGGTTGTTGTTTTGATGATGAGGATTGGTGTTCAGGATCCATACTATGATTCAGAACAATATAGGGGAGATGGAGGAGATGGAACTGGGCATTGGGTCTATGAGAAGGTAATGTACATTTCCCATTCAATATCAGCTACTACCTCCGTTTTAAAATGATTTTTTACGCTTTCGTTTTAGTTTGTTTCATAATATTTTTTACATGGTGCTGCTAAAGTATTATTTTATTCTTTTACTTGTATTAGTACTTGGTATAGATGAATTGAATGATTTTGTTATACTTGGTATAGATAATTGGAATGTTAATGGGTTTGGAAACTGGTAATGCAGCAAGAAGACATTGAGGAAGCTGGAAGAGCAGCATTATGGCGCGAAGAGCTAATTGAAGAGATTGAGCTTAAAGTTGGTAGCTTAAGAGAGTTGGAGGATTCTGCTCGCAAAGAGGAGCTTCTTAAATGATCTTTTCTTAATCTCTTAATTCTGCATATACTGATATACGGACTACTTCGTATTATGTACATTGTATCCTCTTGTTTCCATGTATAAACGTATAATTCTACGCAGTATTATGTTGAGATTTCACTGATTAAAACTTTGATATACGGGAAGTGTTTGATTGAAAGAGGGCTGAAAGAGAGTTTTAACCGGGTTTAAAACTCTACTATATGAGCTTTATGGTTAGTGGGGTTTGGGATATTTGTGTGGAAAAGACTACTACGGAGTATCTTAAGATTGTTCTAATTTCCTAACATTTAGTTCTTTCTTATGTTTGCTCAAACATATACTTATTGTGAGGTTGATTCATTGATTGTACCACTTCTAATTTCTCTAAGAAGTGCACGTACTATTGACCGTTCTTGGGTCGAATAATCAGTATTACTACCTGTTCCGGTGTTGAAATAATGAATTTCGGATTGAAGGCCATTTCGTAATGTGGAAGATCTAGCTTGAATGGTTGTGTAGTGTTCGAAGATACATGCACAATGAACAAAGTAACTAGCCTCGGGGGTGTTTCGAGGAAAGCCTCTCCGATGCCTAAGTAAGTACTTGGTTCGGATTCAGCAATAAAGTGGAC

mRNA sequence

CATAAACAAATAAAATAGCTTTGGATGCACACGTATAATTAACTAACGGTGGTATTTTAGGAAATTTCACTAACTAATTAATTACATTCCAAAAGGTAAGGGAAACATGAGTGGAAGTGGTTGTCTTATCCAATTCCCTCTCATGAAACAACACAACTTGGTCACATGAACACCAAACTACATTGTTGAACAAAAAATGGTTGAGGCTATGATGAGTTTCACCTTATCCAAGCCCATATCTCCACTCCACTCACTAAATTCAAACACCATTAACAACAACTCTCCTAAATTAGTGCTTAAACCATGTTCAATCTCCAACTTCGGCAACAACCAGGTTGAAAAAAGAGGAAGGGGTAATGCTGGGAAAGTAAAAGTTAGTTTAGCAGAATGGCCTTTGATGGCAGTTCTAGTTGAGCATGTTGAAGGACAAAGAGATCTCATTACCCACAAATCAATTTGGCATCTTAGTGATGCTGCCATCAAGAATGTTTACCTTTTCTATATGATGTTCACTTGTTGGGGATGTTGTGTCTTTGGTGCTGCTAAAGATCCATACTATGATTCAGAACAATATAGGGGAGATGGAGGAGATGGAACTGGGCATTGGGTCTATGAGAAGCAAGAAGACATTGAGGAAGCTGGAAGAGCAGCATTATGGCGCGAAGAGCTAATTGAAGAGATTGAGCTTAAAGTTGGTAGCTTAAGAGAGTTGGAGGATTCTGCTCGCAAAGAGGAGCTTCTTAAATGATCTTTTCTTAATCTCTTAATTCTGCATATACTGATATACGGACTACTTCGTATTATGTACATTGTATCCTCTTGTTTCCATGTATAAACGTATAATTCTACGCAGTATTATGTTGAGATTTCACTGATTAAAACTTTGATATACGGGAAGTGTTTGATTGAAAGAGGGCTGAAAGAGAGTTTTAACCGGGTTTAAAACTCTACTATATGAGCTTTATGGTTAGTGGGGTTTGGGATATTTGTGTGGAAAAGACTACTACGGAGTATCTTAAGATTGTTCTAATTTCCTAACATTTAGTTCTTTCTTATGTTTGCTCAAACATATACTTATTGTGAGGTTGATTCATTGATTGTACCACTTCTAATTTCTCTAAGAAGTGCACGTACTATTGACCGTTCTTGGGTCGAATAATCAGTATTACTACCTGTTCCGGTGTTGAAATAATGAATTTCGGATTGAAGGCCATTTCGTAATGTGGAAGATCTAGCTTGAATGGTTGTGTAGTGTTCGAAGATACATGCACAATGAACAAAGTAACTAGCCTCGGGGGTGTTTCGAGGAAAGCCTCTCCGATGCCTAAGTAAGTACTTGGTTCGGATTCAGCAATAAAGTGGAC

Coding sequence (CDS)

ATGGTTGAGGCTATGATGAGTTTCACCTTATCCAAGCCCATATCTCCACTCCACTCACTAAATTCAAACACCATTAACAACAACTCTCCTAAATTAGTGCTTAAACCATGTTCAATCTCCAACTTCGGCAACAACCAGGTTGAAAAAAGAGGAAGGGGTAATGCTGGGAAAGTAAAAGTTAGTTTAGCAGAATGGCCTTTGATGGCAGTTCTAGTTGAGCATGTTGAAGGACAAAGAGATCTCATTACCCACAAATCAATTTGGCATCTTAGTGATGCTGCCATCAAGAATGTTTACCTTTTCTATATGATGTTCACTTGTTGGGGATGTTGTGTCTTTGGTGCTGCTAAAGATCCATACTATGATTCAGAACAATATAGGGGAGATGGAGGAGATGGAACTGGGCATTGGGTCTATGAGAAGCAAGAAGACATTGAGGAAGCTGGAAGAGCAGCATTATGGCGCGAAGAGCTAATTGAAGAGATTGAGCTTAAAGTTGGTAGCTTAAGAGAGTTGGAGGATTCTGCTCGCAAAGAGGAGCTTCTTAAATGA

Protein sequence

MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKVSLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEELLK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo08190.1	Spo08190.1	mRNA

Homology

[Close]

BLAST of Spo08190.1 vs. NCBI nr
Match: gi|902226359|gb|KNA20332.1| (hypothetical protein SOVF_052940 [Spinacia oleracea])

HSP 1 Score: 370.2 bits (949), Expect = 2.100e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKV 60
           MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKV
Sbjct: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKV 60

Query: 61  SLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPY 120
           SLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPY
Sbjct: 61  SLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPY 120

Query: 121 YDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEE 180
           YDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEE
Sbjct: 121 YDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEE 180

Query: 181 LLK 184
           LLK
Sbjct: 181 LLK 183

[Close]

BLAST of Spo08190.1 vs. NCBI nr
Match: gi|731334957|ref|XP_010678485.1| (PREDICTED: uncharacterized protein LOC104894025 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 279.3 bits (713), Expect = 5.000e-72
Identity = 143/187 (76.47%), Postives = 157/187 (83.96%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPI-SPLHSLNSNTINNNSPKLVLKPCSISNFGN---NQVEKRGRGNAG 60
           MVE + SFTL KPI S  + L+ NTINNNS  L+LK CSIS FGN   +QVEKR RG+  
Sbjct: 1   MVETIASFTLCKPIYSRFNPLSINTINNNSANLLLKQCSISKFGNGLSHQVEKRERGHVE 60

Query: 61  KVKVSLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAA 120
           KV  +L +WPLMAVLVEH+EGQRDLITHKSIWHLSD AIK VY FY+MFTCWGCC FGA 
Sbjct: 61  KVN-ALPDWPLMAVLVEHIEGQRDLITHKSIWHLSDDAIKKVYTFYVMFTCWGCCFFGAT 120

Query: 121 KDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSA 180
           KDPYYDSE+YRGDGGDGTGHWVYEKQEDIEE+ RAALWREELIEEIE KVG LRELED+ 
Sbjct: 121 KDPYYDSEEYRGDGGDGTGHWVYEKQEDIEESARAALWREELIEEIEQKVGGLRELEDAG 180

Query: 181 RKEELLK 184
           RKEEL+K
Sbjct: 181 RKEELVK 186

[Close]

BLAST of Spo08190.1 vs. NCBI nr
Match: gi|698520907|ref|XP_009757265.1| (PREDICTED: uncharacterized protein LOC104210145 [Nicotiana sylvestris])

HSP 1 Score: 235.0 bits (598), Expect = 1.100e-58
Identity = 123/193 (63.73%), Postives = 142/193 (73.58%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKP-------CSISNFGN--NQVEK-R 60
           M EA+M FT+ KP    H+           KLVL P       CS S FGN  +Q++  +
Sbjct: 1   MAEAVMRFTVIKPNVQCHAT----------KLVLHPFTKSLRHCSSSAFGNGRHQIQSGK 60

Query: 61  GRGNAGKVKVSLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGC 120
            + N G    +L +WPLMAVLVEH+EGQRDLITHKS+WHLSD A+KNVY FY+MFT WGC
Sbjct: 61  SKRNCGLRVKALPDWPLMAVLVEHMEGQRDLITHKSVWHLSDEAMKNVYTFYIMFTVWGC 120

Query: 121 CVFGAAKDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLR 180
           C FG+ KDPYYDSEQYRGDGGDGTGHWVYEKQEDIEE  RA LWREELIEEIE KVG LR
Sbjct: 121 CFFGSTKDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEEARAKLWREELIEEIEQKVGGLR 180

Query: 181 ELEDSARKEELLK 184
           ELE++ +KEEL+K
Sbjct: 181 ELEEAGKKEELVK 183

[Close]

BLAST of Spo08190.1 vs. NCBI nr
Match: gi|697128827|ref|XP_009618462.1| (PREDICTED: uncharacterized protein LOC104110640 [Nicotiana tomentosiformis])

HSP 1 Score: 233.4 bits (594), Expect = 3.100e-58
Identity = 121/187 (64.71%), Postives = 141/187 (75.40%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNN----QVEKRGRGNAG 60
           M EA+MSFT+ KP    H+     ++ +     L+ CS S FG      Q  K  R +  
Sbjct: 1   MAEAVMSFTIIKPTVQCHATK---LDLHPFTKSLRQCSSSAFGKGRHQIQAGKSKRNSGL 60

Query: 61  KVKVSLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAA 120
           +VK +L +WPLMAVLVEH+EGQRDLITHKS+WHLSD A+KNVY FY+MFT WGCC FG+ 
Sbjct: 61  RVK-ALPDWPLMAVLVEHMEGQRDLITHKSVWHLSDEAMKNVYTFYIMFTVWGCCFFGST 120

Query: 121 KDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSA 180
           KDPYYDSEQYRGDGGDGTGHWVYEKQEDIEE  RA LWREELIEEIE KVG LRELE++ 
Sbjct: 121 KDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEEARAKLWREELIEEIEQKVGGLRELEEAG 180

Query: 181 RKEELLK 184
           +KEEL+K
Sbjct: 181 KKEELVK 183

[Close]

BLAST of Spo08190.1 vs. NCBI nr
Match: gi|565377034|ref|XP_006354995.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X1 [Solanum tuberosum])

HSP 1 Score: 233.0 bits (593), Expect = 4.100e-58
Identity = 116/178 (65.17%), Postives = 137/178 (76.97%), Query Frame = 1

		  
Query: 6   MSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKVSLAEW 65
           MSFT++KP  P  +L  +    +     L+ CS S FGN     + + N G    +L +W
Sbjct: 1   MSFTVTKPSIPSPTLELHPFTKSQ----LRHCSTSPFGNASRRHQIQRNCGIRVKALPDW 60

Query: 66  PLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPYYDSEQ 125
           PLMAVLVEH+EGQRDLITHKS+WHLSD A+KNVY FY+MFT WGCC FG+ KDPYYDSEQ
Sbjct: 61  PLMAVLVEHMEGQRDLITHKSVWHLSDEAMKNVYTFYIMFTVWGCCFFGSTKDPYYDSEQ 120

Query: 126 YRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEELLK 184
           YRGDGGDGTGHWVYEKQEDIEE  RA LWR+ELIEEIE KVGSLRELE++ +KE+L+K
Sbjct: 121 YRGDGGDGTGHWVYEKQEDIEEEARAELWRDELIEEIEQKVGSLRELEEAGKKEQLVK 174

[Close]

BLAST of Spo08190.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNB3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_052940 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.500e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKV 60
           MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKV
Sbjct: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKV 60

Query: 61  SLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPY 120
           SLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPY
Sbjct: 61  SLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPY 120

Query: 121 YDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEE 180
           YDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEE
Sbjct: 121 YDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEE 180

Query: 181 LLK 184
           LLK
Sbjct: 181 LLK 183

[Close]

BLAST of Spo08190.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAI8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114410 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.500e-72
Identity = 143/187 (76.47%), Postives = 157/187 (83.96%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPI-SPLHSLNSNTINNNSPKLVLKPCSISNFGN---NQVEKRGRGNAG 60
           MVE + SFTL KPI S  + L+ NTINNNS  L+LK CSIS FGN   +QVEKR RG+  
Sbjct: 1   MVETIASFTLCKPIYSRFNPLSINTINNNSANLLLKQCSISKFGNGLSHQVEKRERGHVE 60

Query: 61  KVKVSLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAA 120
           KV  +L +WPLMAVLVEH+EGQRDLITHKSIWHLSD AIK VY FY+MFTCWGCC FGA 
Sbjct: 61  KVN-ALPDWPLMAVLVEHIEGQRDLITHKSIWHLSDDAIKKVYTFYVMFTCWGCCFFGAT 120

Query: 121 KDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSA 180
           KDPYYDSE+YRGDGGDGTGHWVYEKQEDIEE+ RAALWREELIEEIE KVG LRELED+ 
Sbjct: 121 KDPYYDSEEYRGDGGDGTGHWVYEKQEDIEESARAALWREELIEEIEQKVGGLRELEDAG 180

Query: 181 RKEELLK 184
           RKEEL+K
Sbjct: 181 RKEELVK 186

[Close]

BLAST of Spo08190.1 vs. UniProtKB/TrEMBL
Match: M1BZG6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021933 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.800e-58
Identity = 116/178 (65.17%), Postives = 137/178 (76.97%), Query Frame = 1

		  
Query: 6   MSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKVSLAEW 65
           MSFT++KP  P  +L  +    +     L+ CS S FGN     + + N G    +L +W
Sbjct: 1   MSFTVTKPSIPSPTLELHPFTKSQ----LRHCSTSPFGNASRRHQIQRNCGIRVKALPDW 60

Query: 66  PLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPYYDSEQ 125
           PLMAVLVEH+EGQRDLITHKS+WHLSD A+KNVY FY+MFT WGCC FG+ KDPYYDSEQ
Sbjct: 61  PLMAVLVEHMEGQRDLITHKSVWHLSDEAMKNVYTFYIMFTVWGCCFFGSTKDPYYDSEQ 120

Query: 126 YRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEELLK 184
           YRGDGGDGTGHWVYEKQEDIEE  RA LWR+ELIEEIE KVGSLRELE++ +KE+L+K
Sbjct: 121 YRGDGGDGTGHWVYEKQEDIEEEARAELWRDELIEEIEQKVGSLRELEEAGKKEQLVK 174

[Close]

BLAST of Spo08190.1 vs. UniProtKB/TrEMBL
Match: M1BZG5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021933 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.800e-58
Identity = 116/178 (65.17%), Postives = 137/178 (76.97%), Query Frame = 1

		  
Query: 6   MSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGRGNAGKVKVSLAEW 65
           MSFT++KP  P  +L  +    +     L+ CS S FGN     + + N G    +L +W
Sbjct: 1   MSFTVTKPSIPSPTLELHPFTKS-----LRHCSTSPFGNASRRHQIQRNCGIRVKALPDW 60

Query: 66  PLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPYYDSEQ 125
           PLMAVLVEH+EGQRDLITHKS+WHLSD A+KNVY FY+MFT WGCC FG+ KDPYYDSEQ
Sbjct: 61  PLMAVLVEHMEGQRDLITHKSVWHLSDEAMKNVYTFYIMFTVWGCCFFGSTKDPYYDSEQ 120

Query: 126 YRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSARKEELLK 184
           YRGDGGDGTGHWVYEKQEDIEE  RA LWR+ELIEEIE KVGSLRELE++ +KE+L+K
Sbjct: 121 YRGDGGDGTGHWVYEKQEDIEEEARAELWRDELIEEIEQKVGSLRELEEAGKKEQLVK 173

[Close]

BLAST of Spo08190.1 vs. UniProtKB/TrEMBL
Match: A0A068UUS7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035718001 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.400e-57
Identity = 117/186 (62.90%), Postives = 137/186 (73.66%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGN--NQVEKRGRGNAGKV 60
           M EA+MSFT++KP     S+ +  ++ N     L+ C  +   N  N +       A   
Sbjct: 1   MAEAVMSFTIAKPNFQSTSVQTTIVDLNPFSKSLRLCPTAGLHNGWNLIGGINSKRASTC 60

Query: 61  KVS-LAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAK 120
           K +   +WPLMAVLVEH EGQRDLITHKSIWHLSD AIKNVY FY+MFTCWGCC FG+ K
Sbjct: 61  KANAFPDWPLMAVLVEHAEGQRDLITHKSIWHLSDQAIKNVYTFYIMFTCWGCCFFGSTK 120

Query: 121 DPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSAR 180
           DPYYDSE+YRGDGGDGTGHWVYEKQEDIEE  RA LWREELIEEIE KVG L+ELE++ +
Sbjct: 121 DPYYDSEEYRGDGGDGTGHWVYEKQEDIEERARAQLWREELIEEIEQKVGGLKELEEAGK 180

Query: 181 KEELLK 184
           KEEL+K
Sbjct: 181 KEELVK 186

[Close]

BLAST of Spo08190.1 vs. ExPASy Swiss-Prot
Match: PNSB4_ARATH (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.000e-48
Identity = 106/182 (58.24%), Postives = 124/182 (68.13%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGR----GNAG 60
           M EA  SFT +     LH  +S    N+SPK    P        N  EKR R    G+  
Sbjct: 1   MAEAFTSFTFTN----LHIPSSY---NHSPKQNSGPNHGYWLSKNVNEKRERNLMRGSLC 60

Query: 61  KVKVSLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAA 120
             K    + PLMAV+V+ +EG RD+IT K +WHLSD AIKNVY+FY+MFTCWGC  FG+A
Sbjct: 61  VRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSA 120

Query: 121 KDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSA 179
           KDP+YDSE+YRGDGGDGTG+WVYE QEDIEE  RA LWREELIEEIE KVG LRELE++ 
Sbjct: 121 KDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAV 175

[Close]

BLAST of Spo08190.1 vs. TAIR (Arabidopsis)
Match: AT1G18730.1 (NDH dependent flow 6)

HSP 1 Score: 192.2 bits (487), Expect = 2.800e-49
Identity = 106/182 (58.24%), Postives = 124/182 (68.13%), Query Frame = 1

		  
Query: 1   MVEAMMSFTLSKPISPLHSLNSNTINNNSPKLVLKPCSISNFGNNQVEKRGR----GNAG 60
           M EA  SFT +     LH  +S    N+SPK    P        N  EKR R    G+  
Sbjct: 1   MAEAFTSFTFTN----LHIPSSY---NHSPKQNSGPNHGYWLSKNVNEKRERNLMRGSLC 60

Query: 61  KVKVSLAEWPLMAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAA 120
             K    + PLMAV+V+ +EG RD+IT K +WHLSD AIKNVY+FY+MFTCWGC  FG+A
Sbjct: 61  VRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSA 120

Query: 121 KDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIEEIELKVGSLRELEDSA 179
           KDP+YDSE+YRGDGGDGTG+WVYE QEDIEE  RA LWREELIEEIE KVG LRELE++ 
Sbjct: 121 KDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAV 175

The following BLAST results are available for this feature:

BLAST of Spo08190.1 vs. NCBI nr
BLAST of Spo08190.1 vs. UniProtKB/TrEMBL
BLAST of Spo08190.1 vs. ExPASy Swiss-Prot
BLAST of Spo08190.1 vs. TAIR (Arabidopsis)

BLAST of Spo08190.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902226359\|gb\|KNA20332.1\|	2.1e-99	100.	hypothetical protein SOVF_0529...	[more]
gi\|731334957\|ref\|XP_010678485.1\|	5.0e-72	76.4	PREDICTED: uncharacterized pro...	[more]
gi\|698520907\|ref\|XP_009757265.1\|	1.1e-58	63.7	PREDICTED: uncharacterized pro...	[more]
gi\|697128827\|ref\|XP_009618462.1\|	3.1e-58	64.7	PREDICTED: uncharacterized pro...	[more]
gi\|565377034\|ref\|XP_006354995.1\|	4.1e-58	65.1	PREDICTED: photosynthetic NDH ...	[more]

BLAST of Spo08190.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RNB3_SPIOL	1.5e-99	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CAI8_BETVU	3.5e-72	76.4	Uncharacterized protein OS=Bet...	[more]
M1BZG6_SOLTU	2.8e-58	65.1	Uncharacterized protein OS=Sol...	[more]
M1BZG5_SOLTU	2.8e-58	65.1	Uncharacterized protein OS=Sol...	[more]
A0A068UUS7_COFCA	2.4e-57	62.9	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo08190.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
PNSB4_ARATH	5.0e-48	58.2	Photosynthetic NDH subunit of ...	[more]

BLAST of Spo08190.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT1G18730.1	2.8e-49	58.2	NDH dependent flow 6	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 155..183 scor
None	No IPR available	PANTHER	PTHR36315	FAMILY NOT NAMED	coord: 2..183 score: 6.2
None	No IPR available	PANTHER	PTHR36315:SF1	NDH DEPENDENT FLOW 6 PROTEIN	coord: 2..183 score: 6.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0051186	cofactor metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:1901564	organonitrogen compound metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08811	0.76	Barchart \| Table
Spo14405	0.73	Barchart \| Table
Spo17337	0.72	Barchart \| Table
Spo16930	0.69	Barchart \| Table
Spo17577	0.68	Barchart \| Table
Spo23035	0.68	Barchart \| Table
Spo15143	0.67	Barchart \| Table
Spo22759	0.67	Barchart \| Table
Spo21361	0.65	Barchart \| Table