Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCGTGTTTGAAATATCGAATCAATCCAATGGAGGAGAATTTACCTCCAGGATTCAGGTTTCATCCAACGGACGAGGAGCTAATTACGTTTTATTTGTCTAAGAAAGTCTCGGATTTCAATTTCGATTCCAAGGCTATTGCTGATGTTGATCTTAACAAGTGTGAGCCTTGGGACCTTCCAGGTACATACTGCTACTACATTTTTAAAACTTGGGGATATATAACCATAATTTGCTGTGTTTTTTTAGGCTGATTCATTAATTATGAATTTGTTACAAATTCGACCAACGGAAGTTAGTAGTTAGTTTGTCACGTTACTAGCTCAAATCCGTGTACTAGTTCTAATTTTCCGTACTTATTATAGATAATATCATAATATGAAGGAGGTAAGATAATCGTGATTTGAACCATCGTATCCTTTATATTCTTTTTTTTATTTCGATAACTATATCCTTTATATTTAGTATATGTGAATATTTTAACGTATTAGTTGTAGATTTGATTTTTAATAATATTTTCTAATTATTTTAGGAATTTATTTTATCTTTGACGTTGTAATATTCTGAGGCTTCTATATATACTCCCTTAGGCCCTGTTCTGCTCACCTTATTTCCACTTATTTCAGGAAAAATAAGTTCAGATAAGTTCGGTTAAATTCAGATAAGTTCAGATAAGATAAGTTCAGGAAAAATAAGGGTTGACCAAGTACAATTTATAACTAAAATAAGTTTTGATAAGTTCTAATAAATTCAGATAAGTTCAGATAAGATAATTTCAGGAAAAATAAGTGGAAATCAGGTGAATAGAACGCAGCCTTACACAATACAATTAAGTTTTATCATAACTCTCTTACTACGCATCAATTCTTAAATGAACTCGGTGCGCGCACACTGAATTTATTGCGAACCATGTCTAAAAAATGTCAAATACTTGTGCATAATTTATTTTGACATGATCATTAGGATTATTATGAAAAAAGAATATCAAATTTGTGTGTGGTTAATATATGTTGTGCTTGAATAATGTGATTTTAACTCACAATTTGCTTTTAAAAACATAGGGTTACTATGATTGAAAAAATAATTACTATATCTAAGAATTTTAGTATTTAATTGATTATAATCACTATATGAACAATAAAGATCTCTATATATGTATAAAAGCGGTTAGAGAAAATTATTGATCGATTTTGTGTTTACACTAATCTATTGTGAACCAGGTTAAGGCAAGAATAATCCTAAACTACGTACTACATATGTATCGTGTCACATCTTAATTGCTTCGAGGGAAAAGAGGATTTTGTTTTGACTTTTGGGCAACTTAAAACGAGGCGTAGCACGTGATCAAAAGCCATCTGATTTTTATATTTTTTGGGTGTGTTTGTGGAGTACTCCTATTATGAAAATGGTCAACCTGCTCGGATCGAAAATTTGTATGCATGGCCGGAAATAGATCGGAAAATGAGAATCAAATGATAGGTCGTAGGCTCAGAGAGTAGCTAGCTAGTTCTAAATCACCATATAGATGAAATACAATGCGGATTTTAGTAGCTATTGTAATACGGAGTACATAATTTTACATATGATTTACGTAAATATTGAATCAAATATAGGCCGTAGGCCCGTAGCCTTCATAAGGTACTCATAAATCACGGACATTATTTCTTTTTATGGCACGATAATTTTCAATAATATCAGTCGTATCCAAAGTGTTTTTTTGTTTTTGTTTTTTCTCATAGGCTGATACTTTGTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTCTCATATGCTTATACTTTGTCAACACGTGGACGTAAAAATAACATTGAGCCTTCTATGCTATAATCTTTTAGTTTAATTTTACAAAACATAACAAGTCAAAATAGTCCATAAGTAGATAAGAAGAGTATAACAATAGTTGATGTATTTAACAAACGTGCAGGAAAAGCATCAATGGGAGAAAAAGAATGGTATTTTTTCAGCTTAAGAGATAGAAAATACCCAACAGGTTTAAGAACAAACCGAGCCACCGAAGCCGGTTATTGGAAAACCACAGGGAAGGATAAAGAAATATTCCGGGGAGGTGTATTAATCGGGATGAAGAAGACTCTTGTATTCTACCGTGGAAGAGCACCCAAGGGAGAAAAAACTAATTGGGTAATGCATGAATATCGTCTCGACAATAAGCTTTCTTTCAAACCCGCCAAGGTACCTTCATATATATTTCGTGCACCATTAAAATTGTACTCCATTTTATCTCGTTTTTTAAGTTAAACGTAGTACGGAGTACTCCGTATTATTAGTTCAACTTAATTATCAATGTCACGTTGTTGTTACTTGAACAAATTTAGAATGTGTTCTTTTCATTTATAAAAATTAAAAAATATCGAAATAAATATCAAAAGAAGTTCGATGTTTTATAAGTTTAAATACTTTTAGATAAATTATAATCAGGTCTTATAGATCATAAGTTGCAATCAGGTTATAATTATGTTTTATATTAATTGGTCAAGCACAATTTATAACTAAAATAAGTTTTGATAAGTCCAGATAAGTTCAGTTAAATTCATATAAGTTCAGTTAAGTTCAGATAAGATAAGTTCAGGAAAAATAAGTGCAAATCAGGTTAATAGAACACAATCTAATTTACTCTCTTGTACAACGTAATTATGTATTATCGTGTCAAATAAGTTTCAATCAAGTCATCTATATCAGGTTTAATCATATTTCCAACACAAATTTATATTTAAAGGTAGAAGTTAAGTCAAAATGCTTAAAACTTATACTAGTCTAATGTAAAAGTTATCTATTTTCTAGTGATAAAATATTTTGCTTTAATAAAATTATTAATAATGTATGAAATTAATTGTGTAACCCTTTAAAATGTTTATCCATACAAAAATATGATGGTATAAAATTTAATCAAAACTTGTTAAAAGTTACGTACCAAAAACTGGGTAAAGGTTTACCCAATGTACAAATTTATTGTACACCTAATGTGTGCCAGACCTTTTGTAGTTTTAATAAGCTTAGATAAGTTTAGGTTTCATGCGGTGATAAGAATGCCCCCTTTATTTTGCTTATATTTTTTAAAAGAAAAAATACTGGAATTAAGATAGTTTTCTCTCAAGAATATATTTTGTTATAAGGCTTTATATATAGGTATAGTATTTATTTTGTGAAATTTCTTAATTGGTTTAAGTACATATTAATACGTACTATGTATTACTCCCTCCGTTCCTAGCTAAATAAGTATCATATTTTTATTTATAGCGTTCCCTAATAACTTAATAAGTGTTCAATTTTCATTTTTGGACATATAATTTTTTTCTCTTTTCCATAAATTATGATTGTTTTTTTCTTATACATTCTACACTCTTTCATCATTGCATCCACTTTTATGGAAAAACTTTGTCTACCGACTAGATAAACTACCCACCACTAATATAGAGTAGTGGTAGTGTAATCCACGACAGCTTTATTAATTATTTGTTAATGTTCTCTTAGTAGTGAGTTGTCTGCCCAGTGAATAGATTTAGCAATGTCCACCTTTATTTGTACTTTACCAATAAACAATTATCTATTTATTCTTTCCCCAAAAAAAACTCACAATCACTGTTTTTTTACCCACTTCTTATTTTTCTCATTCTTCTAAATAAGACACTTATTTAAGAACGGAAGGAGTATTGTATTTACGAAACATGTGCAACATTTGAGATTATTTTCTGACAATTTTCCTATATTTTTTTTGAATCTATTATAACTCGTTCTTATTTGTCGACAGGATGAATGGGTGGTGTGTAGAGTTTTCCAAAAGAGTGTAGCAGTTAAAAAACCACAACCCACCTCACCCTCAATGGTCTCACCAGACTCACCAGATGATACCAACACACATACAAACGAGTATGGAGACATTGAGCTACCAAATCTAAACAACCTATCAACTTCACCCAATCACGGTTTTAATTACCCCTCCCTACAAAATTACCCTAATTGTACTACTACTAATCATCTAAATTTAACCGGGAACACGAATTTAAACTTAAATTGGGCACTAGAAATGGCAACTCTTCAACCATTATCCTGGCCGTCTACCTTCCTTACTCCAAATCTAAATAGCACGGTAAATTCTTTGTTACTAAAGGCTCTACAGTTTCGAAGTACAACAAGTGGTAATACTAACGACTACTCGTTCCTTGGCCACCAACAAGGGTTGTCTATAGGAAGTATGACGAATGAAATATGTTCGGGTTTCCAACCTTCATCGTCGTCTGCTGACACCGTGTTTCAGTCTATTCAACAACAGAATCAACAAAACCAACAACAACAACAACAACAACAACAACAACAACAACTCCAGGACCAACCATTCAATTTGGACTCCATGTGGTGATCATGTAATGCTATGTACGTACGTACAGTCGTAGACTTGAACATAAATGTAAAAGACTGAAGCTAATTAACAATTCAATATGTGACTGGTTATGTCCCTTAAGCATGTCGATCTATAGTCATTGAGTTATTGTATTGAAGAGGAATAATCATCTTCATTTAGAGGATTAACTTGTTAATTAAAGTGTAATTACTATGGGCGAAGCCC TTCGTGTTTGAAATATCGAATCAATCCAATGGAGGAGAATTTACCTCCAGGATTCAGGTTTCATCCAACGGACGAGGAGCTAATTACGTTTTATTTGTCTAAGAAAGTCTCGGATTTCAATTTCGATTCCAAGGCTATTGCTGATGTTGATCTTAACAAGTGTGAGCCTTGGGACCTTCCAGGAAAAGCATCAATGGGAGAAAAAGAATGGTATTTTTTCAGCTTAAGAGATAGAAAATACCCAACAGGTTTAAGAACAAACCGAGCCACCGAAGCCGGTTATTGGAAAACCACAGGGAAGGATAAAGAAATATTCCGGGGAGGTGTATTAATCGGGATGAAGAAGACTCTTGTATTCTACCGTGGAAGAGCACCCAAGGGAGAAAAAACTAATTGGGTAATGCATGAATATCGTCTCGACAATAAGCTTTCTTTCAAACCCGCCAAGGATGAATGGGTGGTGTGTAGAGTTTTCCAAAAGAGTGTAGCAGTTAAAAAACCACAACCCACCTCACCCTCAATGGTCTCACCAGACTCACCAGATGATACCAACACACATACAAACGAGTATGGAGACATTGAGCTACCAAATCTAAACAACCTATCAACTTCACCCAATCACGGTTTTAATTACCCCTCCCTACAAAATTACCCTAATTGTACTACTACTAATCATCTAAATTTAACCGGGAACACGAATTTAAACTTAAATTGGGCACTAGAAATGGCAACTCTTCAACCATTATCCTGGCCGTCTACCTTCCTTACTCCAAATCTAAATAGCACGGTAAATTCTTTGTTACTAAAGGCTCTACAGTTTCGAAGTACAACAAGTGGTAATACTAACGACTACTCGTTCCTTGGCCACCAACAAGGGTTGTCTATAGGAAGTATGACGAATGAAATATGTTCGGGTTTCCAACCTTCATCGTCGTCTGCTGACACCGTGTTTCAGTCTATTCAACAACAGAATCAACAAAACCAACAACAACAACAACAACAACAACAACAACAACAACTCCAGGACCAACCATTCAATTTGGACTCCATGTGGTGATCATGTAATGCTATGTACGTACGTACAGTCGTAGACTTGAACATAAATGTAAAAGACTGAAGCTAATTAACAATTCAATATGTGACTGGTTATGTCCCTTAAGCATGTCGATCTATAGTCATTGAGTTATTGTATTGAAGAGGAATAATCATCTTCATTTAGAGGATTAACTTGTTAATTAAAGTGTAATTACTATGGGCGAAGCCC ATGGAGGAGAATTTACCTCCAGGATTCAGGTTTCATCCAACGGACGAGGAGCTAATTACGTTTTATTTGTCTAAGAAAGTCTCGGATTTCAATTTCGATTCCAAGGCTATTGCTGATGTTGATCTTAACAAGTGTGAGCCTTGGGACCTTCCAGGAAAAGCATCAATGGGAGAAAAAGAATGGTATTTTTTCAGCTTAAGAGATAGAAAATACCCAACAGGTTTAAGAACAAACCGAGCCACCGAAGCCGGTTATTGGAAAACCACAGGGAAGGATAAAGAAATATTCCGGGGAGGTGTATTAATCGGGATGAAGAAGACTCTTGTATTCTACCGTGGAAGAGCACCCAAGGGAGAAAAAACTAATTGGGTAATGCATGAATATCGTCTCGACAATAAGCTTTCTTTCAAACCCGCCAAGGATGAATGGGTGGTGTGTAGAGTTTTCCAAAAGAGTGTAGCAGTTAAAAAACCACAACCCACCTCACCCTCAATGGTCTCACCAGACTCACCAGATGATACCAACACACATACAAACGAGTATGGAGACATTGAGCTACCAAATCTAAACAACCTATCAACTTCACCCAATCACGGTTTTAATTACCCCTCCCTACAAAATTACCCTAATTGTACTACTACTAATCATCTAAATTTAACCGGGAACACGAATTTAAACTTAAATTGGGCACTAGAAATGGCAACTCTTCAACCATTATCCTGGCCGTCTACCTTCCTTACTCCAAATCTAAATAGCACGGTAAATTCTTTGTTACTAAAGGCTCTACAGTTTCGAAGTACAACAAGTGGTAATACTAACGACTACTCGTTCCTTGGCCACCAACAAGGGTTGTCTATAGGAAGTATGACGAATGAAATATGTTCGGGTTTCCAACCTTCATCGTCGTCTGCTGACACCGTGTTTCAGTCTATTCAACAACAGAATCAACAAAACCAACAACAACAACAACAACAACAACAACAACAACAACTCCAGGACCAACCATTCAATTTGGACTCCATGTGGTGA MEENLPPGFRFHPTDEELITFYLSKKVSDFNFDSKAIADVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRGGVLIGMKKTLVFYRGRAPKGEKTNWVMHEYRLDNKLSFKPAKDEWVVCRVFQKSVAVKKPQPTSPSMVSPDSPDDTNTHTNEYGDIELPNLNNLSTSPNHGFNYPSLQNYPNCTTTNHLNLTGNTNLNLNWALEMATLQPLSWPSTFLTPNLNSTVNSLLLKALQFRSTTSGNTNDYSFLGHQQGLSIGSMTNEICSGFQPSSSSADTVFQSIQQQNQQNQQQQQQQQQQQQLQDQPFNLDSMW Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08203.1 vs. NCBI nr
Match: gi|731334889|ref|XP_010678450.1| (PREDICTED: protein CUP-SHAPED COTYLEDON 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 509.2 bits (1310), Expect = 5.500e-141 Identity = 269/351 (76.64%), Postives = 294/351 (83.76%), Query Frame = 1
BLAST of Spo08203.1 vs. NCBI nr
Match: gi|568864835|ref|XP_006485794.1| (PREDICTED: NAC domain-containing protein 92 [Citrus sinensis]) HSP 1 Score: 401.0 bits (1029), Expect = 2.100e-108 Identity = 213/346 (61.56%), Postives = 259/346 (74.86%), Query Frame = 1
BLAST of Spo08203.1 vs. NCBI nr
Match: gi|567896976|ref|XP_006440976.1| (hypothetical protein CICLE_v10023578mg [Citrus clementina]) HSP 1 Score: 399.8 bits (1026), Expect = 4.700e-108 Identity = 213/346 (61.56%), Postives = 258/346 (74.57%), Query Frame = 1
BLAST of Spo08203.1 vs. NCBI nr
Match: gi|255582751|ref|XP_002532152.1| (PREDICTED: NAC domain-containing protein 92 [Ricinus communis]) HSP 1 Score: 398.7 bits (1023), Expect = 1.100e-107 Identity = 223/354 (62.99%), Postives = 258/354 (72.88%), Query Frame = 1
BLAST of Spo08203.1 vs. NCBI nr
Match: gi|297734208|emb|CBI15455.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 394.8 bits (1013), Expect = 1.500e-106 Identity = 218/347 (62.82%), Postives = 263/347 (75.79%), Query Frame = 1
BLAST of Spo08203.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAG6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114130 PE=4 SV=1) HSP 1 Score: 509.2 bits (1310), Expect = 3.800e-141 Identity = 269/351 (76.64%), Postives = 294/351 (83.76%), Query Frame = 1
BLAST of Spo08203.1 vs. UniProtKB/TrEMBL
Match: V4TWF0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023578mg PE=4 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 3.300e-108 Identity = 213/346 (61.56%), Postives = 258/346 (74.57%), Query Frame = 1
BLAST of Spo08203.1 vs. UniProtKB/TrEMBL
Match: B9T1N3_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1158820 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 7.300e-108 Identity = 223/354 (62.99%), Postives = 258/354 (72.88%), Query Frame = 1
BLAST of Spo08203.1 vs. UniProtKB/TrEMBL
Match: D7SIZ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03660 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 1.100e-106 Identity = 218/347 (62.82%), Postives = 263/347 (75.79%), Query Frame = 1
BLAST of Spo08203.1 vs. UniProtKB/TrEMBL
Match: R4NEP0_JATCU (NAC transcription factor 005 OS=Jatropha curcas GN=JCGZ_05892 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 1.100e-106 Identity = 230/357 (64.43%), Postives = 265/357 (74.23%), Query Frame = 1
BLAST of Spo08203.1 vs. ExPASy Swiss-Prot
Match: NAC79_ARATH (NAC domain-containing protein 79 OS=Arabidopsis thaliana GN=NAC079 PE=2 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 9.600e-69 Identity = 121/158 (76.58%), Postives = 133/158 (84.18%), Query Frame = 1
BLAST of Spo08203.1 vs. ExPASy Swiss-Prot
Match: NC100_ARATH (NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 2.100e-68 Identity = 121/158 (76.58%), Postives = 133/158 (84.18%), Query Frame = 1
BLAST of Spo08203.1 vs. ExPASy Swiss-Prot
Match: NAC98_ARATH (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 9.900e-66 Identity = 117/154 (75.97%), Postives = 132/154 (85.71%), Query Frame = 1
BLAST of Spo08203.1 vs. ExPASy Swiss-Prot
Match: NAC92_ARATH (NAC domain-containing protein 92 OS=Arabidopsis thaliana GN=NAC92 PE=1 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 5.500e-64 Identity = 125/195 (64.10%), Postives = 140/195 (71.79%), Query Frame = 1
BLAST of Spo08203.1 vs. ExPASy Swiss-Prot
Match: NAC54_ARATH (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 3.900e-62 Identity = 121/199 (60.80%), Postives = 141/199 (70.85%), Query Frame = 1
BLAST of Spo08203.1 vs. TAIR (Arabidopsis)
Match: AT3G18400.1 (NAC domain containing protein 58) HSP 1 Score: 316.2 bits (809), Expect = 2.400e-86 Identity = 195/350 (55.71%), Postives = 223/350 (63.71%), Query Frame = 1
BLAST of Spo08203.1 vs. TAIR (Arabidopsis)
Match: AT5G07680.1 (NAC domain containing protein 80) HSP 1 Score: 261.9 bits (668), Expect = 5.400e-70 Identity = 121/158 (76.58%), Postives = 133/158 (84.18%), Query Frame = 1
BLAST of Spo08203.1 vs. TAIR (Arabidopsis)
Match: AT5G61430.1 (NAC domain containing protein 100) HSP 1 Score: 260.8 bits (665), Expect = 1.200e-69 Identity = 121/158 (76.58%), Postives = 133/158 (84.18%), Query Frame = 1
BLAST of Spo08203.1 vs. TAIR (Arabidopsis)
Match: AT2G24430.1 (NAC domain containing protein 38) HSP 1 Score: 256.5 bits (654), Expect = 2.300e-68 Identity = 135/223 (60.54%), Postives = 158/223 (70.85%), Query Frame = 1
BLAST of Spo08203.1 vs. TAIR (Arabidopsis)
Match: AT5G53950.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 251.9 bits (642), Expect = 5.600e-67 Identity = 117/154 (75.97%), Postives = 132/154 (85.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08203.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08203.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08203.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08203.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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