Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTAACTAAGTTTCTGTCAATTCGGGGCATCTTGAATAAATGATACAAACTCCTTAACTATAATAATTAGCTTAAAATGTAAACTTGTATAATTGGAGAGAGAAAATGAAGCTTCATTTTCATTATAATACACTACTAGAGCTTCACAATTAGCAATTTATTCTTCATAATAGGAATTAAAGAGAGAGAAAACATATTAAAAGAAGAAGAAAGATAATGGAGAAAGCATTAACAAAAGTTGGGAGCTTGAAAGTTGGAAGCTTTTGGATTTCTAAGAAGGCCAAAGAAGAATTATCCACCATTACTGATGATCTCTCTGTATGTTACTCTACCATTCTAAATTTCTAATCTCTCAACTAGCTTAGTCGGCAATTTTATTTGGAGTGGTATTTAAGGTTTAAGATTGAATTTAATCTAATCATTGTGTATGTCATCTTTCAGCTAGCTTAGTTGATAATTTTATTTTGGGTGGTATTTAAGGTTTAAGGTTTATTATTGAATTTAATCTAATCTAGCTATGTCGTCCCTTTTGTCTTTCTATCCATCAAAAAAAAAAAAAAAGGCATTTATATATTTTTATGTGCTTGGTCTTGGTGTGGGTGTTGTTTGTATAATGAAGTAAATCAAAGTTATGAACTTTAATGTAAGATTGAGTTTTTCTACAAGGAAAATAGTGTAAGGAATCACGTAAAAGCTAAAATGAGGTGCATAATTGTTTAGGCACCAATTCTTAAATGGACTTGGTCCACATTAAATTTATTGCGGATTATGTCTTAAAAGAAAGTCAACAACTTGTTCCTAATTTATTTTGGCATTTTACTAAAATTATTATGAAAAAAAAAAATCTAATTAGTGCCATTGATACATGTTGTACTTGAATAATATGATTTTAAGTCAAAATTCGCTTTTAAAAATATAGGGTTACTATGCTTCAAAAAATGGTTACTATGTCTATGAATTTTGGTGTTTAATTAATTATAGTTAATATATGAACAATAAAGGCCACTATGAATATAAAAAGGGTGATAGAGAAAGCTATTAATTTTGGGTCCACAATAATATTATCGTGGACCAGGTCCACGTACGCAAGAATAATCCTTGTTTAGAGGCTCTAGACTCTAAAATGATATCTAGGAACGGAGGGAGTATAAATGTTATATATTTATTAATTATATTTTCACTACTTTAGTGTTTAAATTTTTTCACTTAAGTGCCTTTGAAGTTACTTCATACCTAACCAAAGAGTTTTGTTCAAAATGTAGTCTATTTCAAGTACAATTGAAGGCAAAGCAAAGTGGGTATTCAACAAATTGAAGGGCAAGACTCAAAAACCCTTGTCGGAGCTCCTTCGAGACTACAACCTTCCGGCGGGACTATTTCCTCAGAACATAATATGCTATGAGTTTGATGAATCGAGATCAAAGCTCATCGTGTATATGTCATCTCCTTGTGAAGTATGCTTTAAGGACTCGAGCATTGTAAGGTATGCCAACCGCGTCAAGGGTACGTTGTTGAAAGGGAAGCTTATAGGAATTGAAGGTATGAAGACTAAAGTGTTAGTGTGGGTTAAAGTGACTAGCATCAATGTCGAAAGCTACAAATCTGATAAAGTTTTGTTCACTGCTGGTGTTAAGAAATATAGGCCTAAAGATGCTTATGAATTGCCTCGCAATGCGGTTAATGTGGAAGAATTTTGATGAACTTTGTTAGTCTCATTTGTGTACCAAAGAAGAACATGTAACTTATTATTGTATGACAATCGATCATACTTCAAATAGAAAATATGTATAGTAGTTAGAAATGGTTGAGCATACGATCGTCAGTAGAGATAATGTAGGTATGTACTATGTATGTAGCATATTGTTAATTACTCCCTACGTTCCTTTATATTATTTCTCTTATACATTAAATGTTTATGATAA TTTCTAACTAAGTTTCTGTCAATTCGGGGCATCTTGAATAAATGATACAAACTCCTTAACTATAATAATTAGCTTAAAATGTAAACTTGTATAATTGGAGAGAGAAAATGAAGCTTCATTTTCATTATAATACACTACTAGAGCTTCACAATTAGCAATTTATTCTTCATAATAGGAATTAAAGAGAGAGAAAACATATTAAAAGAAGAAGAAAGATAATGGAGAAAGCATTAACAAAAGTTGGGAGCTTGAAAGTTGGAAGCTTTTGGATTTCTAAGAAGGCCAAAGAAGAATTATCCACCATTACTGATGATCTCTCTTCTATTTCAAGTACAATTGAAGGCAAAGCAAAGTGGGTATTCAACAAATTGAAGGGCAAGACTCAAAAACCCTTGTCGGAGCTCCTTCGAGACTACAACCTTCCGGCGGGACTATTTCCTCAGAACATAATATGCTATGAGTTTGATGAATCGAGATCAAAGCTCATCGTGTATATGTCATCTCCTTGTGAAGTATGCTTTAAGGACTCGAGCATTGTAAGGTATGCCAACCGCGTCAAGGGTACGTTGTTGAAAGGGAAGCTTATAGGAATTGAAGGTATGAAGACTAAAGTGTTAGTGTGGGTTAAAGTGACTAGCATCAATGTCGAAAGCTACAAATCTGATAAAGTTTTGTTCACTGCTGGTGTTAAGAAATATAGGCCTAAAGATGCTTATGAATTGCCTCGCAATGCGGTTAATGTGGAAGAATTTTGATGAACTTTGTTAGTCTCATTTGTGTACCAAAGAAGAACATGTAACTTATTATTGTATGACAATCGATCATACTTCAAATAGAAAATATGTATAGTAGTTAGAAATGGTTGAGCATACGATCGTCAGTAGAGATAATGTAGGTATGTACTATGTATGTAGCATATTGTTAATTACTCCCTACGTTCCTTTATATTATTTCTCTTATACATTAAATGTTTATGATAA ATGGAGAAAGCATTAACAAAAGTTGGGAGCTTGAAAGTTGGAAGCTTTTGGATTTCTAAGAAGGCCAAAGAAGAATTATCCACCATTACTGATGATCTCTCTTCTATTTCAAGTACAATTGAAGGCAAAGCAAAGTGGGTATTCAACAAATTGAAGGGCAAGACTCAAAAACCCTTGTCGGAGCTCCTTCGAGACTACAACCTTCCGGCGGGACTATTTCCTCAGAACATAATATGCTATGAGTTTGATGAATCGAGATCAAAGCTCATCGTGTATATGTCATCTCCTTGTGAAGTATGCTTTAAGGACTCGAGCATTGTAAGGTATGCCAACCGCGTCAAGGGTACGTTGTTGAAAGGGAAGCTTATAGGAATTGAAGGTATGAAGACTAAAGTGTTAGTGTGGGTTAAAGTGACTAGCATCAATGTCGAAAGCTACAAATCTGATAAAGTTTTGTTCACTGCTGGTGTTAAGAAATATAGGCCTAAAGATGCTTATGAATTGCCTCGCAATGCGGTTAATGTGGAAGAATTTTGA MEKALTKVGSLKVGSFWISKKAKEELSTITDDLSSISSTIEGKAKWVFNKLKGKTQKPLSELLRDYNLPAGLFPQNIICYEFDESRSKLIVYMSSPCEVCFKDSSIVRYANRVKGTLLKGKLIGIEGMKTKVLVWVKVTSINVESYKSDKVLFTAGVKKYRPKDAYELPRNAVNVEEF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08205.1 vs. NCBI nr
Match: gi|902206126|gb|KNA15384.1| (hypothetical protein SOVF_098640 [Spinacia oleracea]) HSP 1 Score: 352.8 bits (904), Expect = 3.400e-94 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
BLAST of Spo08205.1 vs. NCBI nr
Match: gi|731334885|ref|XP_010678448.1| (PREDICTED: uncharacterized protein At5g01610-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 305.1 bits (780), Expect = 8.200e-80 Identity = 156/179 (87.15%), Postives = 165/179 (92.18%), Query Frame = 1
BLAST of Spo08205.1 vs. NCBI nr
Match: gi|728814991|gb|KHG01697.1| (hypothetical protein F383_22922 [Gossypium arboreum]) HSP 1 Score: 288.1 bits (736), Expect = 1.000e-74 Identity = 141/178 (79.21%), Postives = 157/178 (88.20%), Query Frame = 1
BLAST of Spo08205.1 vs. NCBI nr
Match: gi|823260646|ref|XP_012463044.1| (PREDICTED: uncharacterized protein At5g01610 [Gossypium raimondii]) HSP 1 Score: 287.3 bits (734), Expect = 1.800e-74 Identity = 141/178 (79.21%), Postives = 157/178 (88.20%), Query Frame = 1
BLAST of Spo08205.1 vs. NCBI nr
Match: gi|590699579|ref|XP_007045962.1| (Uncharacterized protein TCM_011610 [Theobroma cacao]) HSP 1 Score: 286.2 bits (731), Expect = 4.000e-74 Identity = 140/178 (78.65%), Postives = 157/178 (88.20%), Query Frame = 1
BLAST of Spo08205.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8S2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_098640 PE=4 SV=1) HSP 1 Score: 352.8 bits (904), Expect = 2.400e-94 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
BLAST of Spo08205.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CFG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114110 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 5.700e-80 Identity = 156/179 (87.15%), Postives = 165/179 (92.18%), Query Frame = 1
BLAST of Spo08205.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MMU6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22922 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 7.300e-75 Identity = 141/178 (79.21%), Postives = 157/178 (88.20%), Query Frame = 1
BLAST of Spo08205.1 vs. UniProtKB/TrEMBL
Match: A0A0D2W4A5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G090600 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.200e-74 Identity = 141/178 (79.21%), Postives = 157/178 (88.20%), Query Frame = 1
BLAST of Spo08205.1 vs. UniProtKB/TrEMBL
Match: A0A061EHN1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011610 PE=4 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 2.800e-74 Identity = 140/178 (78.65%), Postives = 157/178 (88.20%), Query Frame = 1
BLAST of Spo08205.1 vs. ExPASy Swiss-Prot
Match: Y5161_ARATH (Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 7.800e-46 Identity = 87/167 (52.10%), Postives = 125/167 (74.85%), Query Frame = 1
BLAST of Spo08205.1 vs. TAIR (Arabidopsis)
Match: AT2G03350.1 (Protein of unknown function, DUF538) HSP 1 Score: 260.0 bits (663), Expect = 1.100e-69 Identity = 127/175 (72.57%), Postives = 149/175 (85.14%), Query Frame = 1
BLAST of Spo08205.1 vs. TAIR (Arabidopsis)
Match: AT3G08890.1 (Protein of unknown function, DUF538) HSP 1 Score: 188.7 bits (478), Expect = 3.000e-48 Identity = 89/167 (53.29%), Postives = 127/167 (76.05%), Query Frame = 1
BLAST of Spo08205.1 vs. TAIR (Arabidopsis)
Match: AT5G37070.1 (Protein of unknown function, DUF538) HSP 1 Score: 187.2 bits (474), Expect = 8.800e-48 Identity = 89/167 (53.29%), Postives = 124/167 (74.25%), Query Frame = 1
BLAST of Spo08205.1 vs. TAIR (Arabidopsis)
Match: AT5G01610.1 (Protein of unknown function, DUF538) HSP 1 Score: 184.9 bits (468), Expect = 4.400e-47 Identity = 87/167 (52.10%), Postives = 125/167 (74.85%), Query Frame = 1
BLAST of Spo08205.1 vs. TAIR (Arabidopsis)
Match: AT1G61667.1 (Protein of unknown function, DUF538) HSP 1 Score: 60.8 bits (146), Expect = 9.500e-10 Identity = 35/104 (33.65%), Postives = 54/104 (51.92%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08205.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo08205.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo08205.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1 Position : 0 Zoom : x 1
BLAST of Spo08205.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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