Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAACTGCTGGCTAATATTTATCCCTTAAATACAACCCTACTTGACTCCAATTAAACTACATCTATTTCCATTCCCTTTGGTTTTTCATACAAAAAAAAAAAAGTTTGGAATCTTATACTCCGTAGAAAATAATCATGTTAGCAATATTTCACAAGGCTTTTGCTCATCCACCAGAAGAGCTGAATAGTCCAGCTTCACATAGAGGTCCAAAAAAACCTAAATTACCTGAAGAAACCCTCAGTGATTTCATCTCTACCCATGACCCGATTAACACCTTCTCTATGAGCTTTGGTCAAGCTGCTGTTCTTGCTTATGTTCGACCCGAACCAGCTAATCCACTCAATCAACTGTAAGTAATCATCATATTACTAAAAAGTACAATCGATCTCCTTGATACGCATATCACTTTTATTGTCATAACTTCCTAAAATATCCTTAATGAATTGTAATAAGAACGAGTAAGTATGTATAGGAGATAAACTCGTAAGCCTTTAATTTGTTTGTTATGTTCTAATGGTTTTTGGGTTCATGTGTGCAGGTTATTTTGTGGGAATGATGATATATATTGTTTGTTTAAGGGGAGTTTGGACAATTTGTGTGGGTTGCTAAAACAATATGGGTTATCTAAAAGTACAAATGAAGCTATGTTGGTAATTGATGCTTATAGAACGCTTAGGGATCGTGGGCCCTACCCTGCTGATCAAGTGATTAAGGATCTTGAAGGATGTTTTGGGTTTGTTATTTACGATAGTAAGACTGGAACTGTCTTTACTGCTCTGGTAATCATACTCCAAACTCCAAACTCCATAATCCAACTTAATCTTTATCATTTTTTATTTTAATTATATCTATTTTTTACTATGCATAAAGGTCTTATTTCATGATCCTGCCCAATTAATCATTTTATTAATAGTTGTAATTTTAAATTTCTTGAATCATAACGGAAGACATGATATTATACAAGGAAAAGTCCACTATTATTATTGTAGATAATTTGTGACATGATTTTGTATTTGTTATTTGTATAAAAGGGTTCGGATGGGGGAATGAAGCTATATTGGGGAATTGCTCTGGATGGCTCAGTGGTAATTTCAGATGATTTAGAGGTTATTAAAGCTGGATGCGCTAAATCATTTGCTCCTTTCCCAGCAGGTGAGATTTCAGTTCTTATCATGTCATCCTACTGATTTGACTGTATTACCCTTAAATGTTAACACGTACTGTTTTGTCTGAAAACAATGTTCATTCCACCGTTTTTGGCTAACGCTATCCTTTTCTGTACGTTTTTGTTTTTTTCTTTTACTTTTTTGTTTGGATAAGGCCAATAATGCATCATCATCACTTCAAAATATCTTCACAAATGTGAAATCCCCACCCACCCCCCTTTTTTTAACGTTTGTTATCGATAATAGCCGAAGTGATACTAAAATTGTTCATCACTTCCTGCATAAACTATTATCTGTTAAAATCCAAACTGATTATATGTTATCTGACCTAATCCAGCACAACCAAACTTGGACTTAGAACACTAAAATACTACTCACTCCGTCCCAAAATTATTGTCCTGTTTCGGGCATTCTTAAATTATAATCCTGTTTCTAATTTTATCTAATAAGGTCCCTAATTTCTCATGTACTATATTAGTTAAAAATGTATTGAAAATCCCAACAATGTACTATCACTTTCCTATGTACTATATTCTCTTTCACATGTACTTTATTCCACTTTTTCATATAAGTCAATCATCATTCGTATTTCATTCCACTTTTTTATGTACTATGTTTCATTTTTCTTAAAATTCGTGTTTTTAGTCTAACGGGACGGAGGGAGTAGCTAGTTAGCCTAGTCAATTAGTGGTTGTGCATCATAATTGATTAATTTTAGGCTATATTTTTGATAAGGTTAAGCAAGTCTACATTATTTATATTTTTGGAGAAAATTAGAAAGAAAGTTTAGTAGTGAATGTTGAATAAAGTTATTTGGTTTGATTTGATATGAGCAGGGTTTATGTTCCATAGCGAAGGAGGATTGATGAGTTTCGAGCATCCAATGAACCAAGTGAAGGCAATGCCAAGGGTGGACAGCCAAGGGGTGATATGCGGAGCAAATTTCAACGTGGACAAGTTCAGTCGTATAAATAGCATGCCTCGTACTGGTAGCGCCGCAAATTGGTCTCAATGGGATACTCATATGAATGAGGCTGCTTGATGATATAACTTCTTCTACAAAACTCAGGCAGCAGAATAATAAACGATCTCCCCTGTTATGTTAAAATCTTCAGACATATACCAAAGTACTCCGTTTGTGATATGGATCGTGCCATAGGGTGTACATTACTAGACGTTTCTTGTTTTCTTTCTTTTTCTGTTTTCCCAAACTAGGGATTAATGACTGAATTTGTTTGGCTTAATAATACTTGTGTGCGGTTCAACTTGGAGGATTAATTACATGAGCAAGCTCGAGTACGTCGATCATAAAAAACCAAAAAGCTCGAAACATAAAAAGACATGAGTGTTATGTGATACTTATAAATAATTGAAAGAAGATGAGTGACTAGAATGTTAAGTATGATGACCGAACAAAA CAAAACTGCTGGCTAATATTTATCCCTTAAATACAACCCTACTTGACTCCAATTAAACTACATCTATTTCCATTCCCTTTGGTTTTTCATACAAAAAAAAAAAAGTTTGGAATCTTATACTCCGTAGAAAATAATCATGTTAGCAATATTTCACAAGGCTTTTGCTCATCCACCAGAAGAGCTGAATAGTCCAGCTTCACATAGAGGTCCAAAAAAACCTAAATTACCTGAAGAAACCCTCAGTGATTTCATCTCTACCCATGACCCGATTAACACCTTCTCTATGAGCTTTGGTCAAGCTGCTGTTCTTGCTTATGTTCGACCCGAACCAGCTAATCCACTCAATCAACTGTTATTTTGTGGGAATGATGATATATATTGTTTGTTTAAGGGGAGTTTGGACAATTTGTGTGGGTTGCTAAAACAATATGGGTTATCTAAAAGTACAAATGAAGCTATGTTGGTAATTGATGCTTATAGAACGCTTAGGGATCGTGGGCCCTACCCTGCTGATCAAGTGATTAAGGATCTTGAAGGATGTTTTGGGTTTGTTATTTACGATAGTAAGACTGGAACTGTCTTTACTGCTCTGGGTTCGGATGGGGGAATGAAGCTATATTGGGGAATTGCTCTGGATGGCTCAGTGGTAATTTCAGATGATTTAGAGGTTATTAAAGCTGGATGCGCTAAATCATTTGCTCCTTTCCCAGCAGGGTTTATGTTCCATAGCGAAGGAGGATTGATGAGTTTCGAGCATCCAATGAACCAAGTGAAGGCAATGCCAAGGGTGGACAGCCAAGGGGTGATATGCGGAGCAAATTTCAACGTGGACAAGTTCAGTCGTATAAATAGCATGCCTCGTACTGGTAGCGCCGCAAATTGGTCTCAATGGGATACTCATATGAATGAGGCTGCTTGATGATATAACTTCTTCTACAAAACTCAGGCAGCAGAATAATAAACGATCTCCCCTGTTATGTTAAAATCTTCAGACATATACCAAAGTACTCCGTTTGTGATATGGATCGTGCCATAGGGTGTACATTACTAGACGTTTCTTGTTTTCTTTCTTTTTCTGTTTTCCCAAACTAGGGATTAATGACTGAATTTGTTTGGCTTAATAATACTTGTGTGCGGTTCAACTTGGAGGATTAATTACATGAGCAAGCTCGAGTACGTCGATCATAAAAAACCAAAAAGCTCGAAACATAAAAAGACATGAGTGTTATGTGATACTTATAAATAATTGAAAGAAGATGAGTGACTAGAATGTTAAGTATGATGACCGAACAAAA ATGTTAGCAATATTTCACAAGGCTTTTGCTCATCCACCAGAAGAGCTGAATAGTCCAGCTTCACATAGAGGTCCAAAAAAACCTAAATTACCTGAAGAAACCCTCAGTGATTTCATCTCTACCCATGACCCGATTAACACCTTCTCTATGAGCTTTGGTCAAGCTGCTGTTCTTGCTTATGTTCGACCCGAACCAGCTAATCCACTCAATCAACTGTTATTTTGTGGGAATGATGATATATATTGTTTGTTTAAGGGGAGTTTGGACAATTTGTGTGGGTTGCTAAAACAATATGGGTTATCTAAAAGTACAAATGAAGCTATGTTGGTAATTGATGCTTATAGAACGCTTAGGGATCGTGGGCCCTACCCTGCTGATCAAGTGATTAAGGATCTTGAAGGATGTTTTGGGTTTGTTATTTACGATAGTAAGACTGGAACTGTCTTTACTGCTCTGGGTTCGGATGGGGGAATGAAGCTATATTGGGGAATTGCTCTGGATGGCTCAGTGGTAATTTCAGATGATTTAGAGGTTATTAAAGCTGGATGCGCTAAATCATTTGCTCCTTTCCCAGCAGGGTTTATGTTCCATAGCGAAGGAGGATTGATGAGTTTCGAGCATCCAATGAACCAAGTGAAGGCAATGCCAAGGGTGGACAGCCAAGGGGTGATATGCGGAGCAAATTTCAACGTGGACAAGTTCAGTCGTATAAATAGCATGCCTCGTACTGGTAGCGCCGCAAATTGGTCTCAATGGGATACTCATATGAATGAGGCTGCTTGA MLAIFHKAFAHPPEELNSPASHRGPKKPKLPEETLSDFISTHDPINTFSMSFGQAAVLAYVRPEPANPLNQLLFCGNDDIYCLFKGSLDNLCGLLKQYGLSKSTNEAMLVIDAYRTLRDRGPYPADQVIKDLEGCFGFVIYDSKTGTVFTALGSDGGMKLYWGIALDGSVVISDDLEVIKAGCAKSFAPFPAGFMFHSEGGLMSFEHPMNQVKAMPRVDSQGVICGANFNVDKFSRINSMPRTGSAANWSQWDTHMNEAA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08221.1 vs. NCBI nr
Match: gi|731329515|ref|XP_010675631.1| (PREDICTED: stem-specific protein TSJT1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 500.4 bits (1287), Expect = 1.900e-138 Identity = 239/260 (91.92%), Postives = 249/260 (95.77%), Query Frame = 1
BLAST of Spo08221.1 vs. NCBI nr
Match: gi|970387806|gb|ALU58321.1| (stem-specific protein TSJT1 [Mesembryanthemum crystallinum]) HSP 1 Score: 478.0 bits (1229), Expect = 1.000e-131 Identity = 228/258 (88.37%), Postives = 241/258 (93.41%), Query Frame = 1
BLAST of Spo08221.1 vs. NCBI nr
Match: gi|502084423|ref|XP_004487686.1| (PREDICTED: stem-specific protein TSJT1 [Cicer arietinum]) HSP 1 Score: 424.5 bits (1090), Expect = 1.400e-115 Identity = 200/255 (78.43%), Postives = 225/255 (88.24%), Query Frame = 1
BLAST of Spo08221.1 vs. NCBI nr
Match: gi|747094766|ref|XP_011095236.1| (PREDICTED: stem-specific protein TSJT1-like [Sesamum indicum]) HSP 1 Score: 422.9 bits (1086), Expect = 4.000e-115 Identity = 201/257 (78.21%), Postives = 228/257 (88.72%), Query Frame = 1
BLAST of Spo08221.1 vs. NCBI nr
Match: gi|590608749|ref|XP_007021349.1| (Aluminum induced protein with YGL and LRDR motifs [Theobroma cacao]) HSP 1 Score: 421.0 bits (1081), Expect = 1.500e-114 Identity = 199/255 (78.04%), Postives = 222/255 (87.06%), Query Frame = 1
BLAST of Spo08221.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FB23_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g087630 PE=4 SV=1) HSP 1 Score: 500.4 bits (1287), Expect = 1.400e-138 Identity = 239/260 (91.92%), Postives = 249/260 (95.77%), Query Frame = 1
BLAST of Spo08221.1 vs. UniProtKB/TrEMBL
Match: A0A0U3HQC3_MESCR (Stem-specific protein TSJT1 OS=Mesembryanthemum crystallinum GN=TSTJ1 PE=2 SV=1) HSP 1 Score: 478.0 bits (1229), Expect = 7.200e-132 Identity = 228/258 (88.37%), Postives = 241/258 (93.41%), Query Frame = 1
BLAST of Spo08221.1 vs. UniProtKB/TrEMBL
Match: A0A061FEF9_THECC (Aluminum induced protein with YGL and LRDR motifs OS=Theobroma cacao GN=TCM_031380 PE=4 SV=1) HSP 1 Score: 421.0 bits (1081), Expect = 1.000e-114 Identity = 199/255 (78.04%), Postives = 222/255 (87.06%), Query Frame = 1
BLAST of Spo08221.1 vs. UniProtKB/TrEMBL
Match: A0A0D2NJC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G072700 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 1.800e-114 Identity = 202/256 (78.91%), Postives = 225/256 (87.89%), Query Frame = 1
BLAST of Spo08221.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MW32_GOSAR (Stem-specific TSJT1 OS=Gossypium arboreum GN=F383_31321 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 1.800e-114 Identity = 202/256 (78.91%), Postives = 225/256 (87.89%), Query Frame = 1
BLAST of Spo08221.1 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 3.100e-27 Identity = 59/151 (39.07%), Postives = 88/151 (58.28%), Query Frame = 1
BLAST of Spo08221.1 vs. ExPASy Swiss-Prot
Match: ASNS1_ORYSJ (Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.200e-7 Identity = 50/187 (26.74%), Postives = 83/187 (44.39%), Query Frame = 1
BLAST of Spo08221.1 vs. TAIR (Arabidopsis)
Match: AT4G27450.1 (Aluminium induced protein with YGL and LRDR motifs) HSP 1 Score: 413.3 bits (1061), Expect = 1.100e-115 Identity = 195/250 (78.00%), Postives = 223/250 (89.20%), Query Frame = 1
BLAST of Spo08221.1 vs. TAIR (Arabidopsis)
Match: AT3G15450.1 (Aluminium induced protein with YGL and LRDR motifs) HSP 1 Score: 354.8 bits (909), Expect = 4.700e-98 Identity = 173/251 (68.92%), Postives = 204/251 (81.27%), Query Frame = 1
BLAST of Spo08221.1 vs. TAIR (Arabidopsis)
Match: AT5G43830.1 (Aluminium induced protein with YGL and LRDR motifs) HSP 1 Score: 237.3 bits (604), Expect = 1.100e-62 Identity = 118/252 (46.83%), Postives = 165/252 (65.48%), Query Frame = 1
BLAST of Spo08221.1 vs. TAIR (Arabidopsis)
Match: AT3G22850.1 (Aluminium induced protein with YGL and LRDR motifs) HSP 1 Score: 229.9 bits (585), Expect = 1.700e-60 Identity = 116/251 (46.22%), Postives = 157/251 (62.55%), Query Frame = 1
BLAST of Spo08221.1 vs. TAIR (Arabidopsis)
Match: AT5G19140.1 (Aluminium induced protein with YGL and LRDR motifs) HSP 1 Score: 189.1 bits (479), Expect = 3.400e-48 Identity = 105/233 (45.06%), Postives = 140/233 (60.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08221.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08221.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08221.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo08221.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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