Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCACCCTCGTTTCCACCCAAAACCCTCGTACTTGTTTGAAGATAATACTCTTACGGTCTTACTTACTGGAAAAAACTCAAACGCGTCTCTCATTTCTCTTTCTCTCTCCTCCTTTCCCATTTTCCGTCCACACTCAAACGTCGCCGTCACAACCACCACTCACCGCTCTCTACTTTTCTCGCCCTCTTTCTTCCAATGGAGTCTTTTGACAAAGCCGCGCGTTTCATGGACGAACTCTTGGACTTCTCTTCCGACATCGGTGAAGAAGAAAGCGACGATGAAATTCCCGGAAATTCCTCCAAAAGTCACCACTTTCTTCACCACCACCGCCTTAATCACCGACGTCATAACCGCCAGTCCCCTCCTTTTGCTGTAAGTCCTCTCTCTCGTTTCCGTCCTCTCTCATTTCCTCTTTTTGTCGAGTTAACTCGGTTAGGCTGTGGTCCGAGTTGACTCTCTTCTATGAAATTACTTATTTACCCCTGAAAACCCTATAGAACGAGTGATTATTTTATTCCGAGGTTACTTTCGGAATTGGTGTAAAAATCAAATTTACTTTACTTTAATTTTGGGTGGTTTGGGGCCCTCCATCTTCTATGTCACAAGACCGGCGTGCACCAATTAATTTTGAGAAACTTTCCCACGCGACTGGCCCTACCACTTTTATTATGGACGCGCACACACAGCACAACAACAACAACAACTAGTCTTTTCGTTTTTGTATATGCACGTGATTTCACGTGCTTTGTCCATTACATTTTCCTAATTCACCTAATTAATTAATAAATAATCACACTTTTATATTTTAAAAAAGTTAAATCTCGTTCATTTTTTCCACCCAAAAAATATTCAAATTAAACGTTATTATCACTATCCTACCTAACCCATTTGAGGTCTTCTCTTTAATTGGACATTTTTTTTCTACTTTCTTCAATTGTCTGATTTCCCCAAATTCTGGGTTTCTGCTAAAAAATTCACACAATTACAATTTTTATTTTAACTGAATTGGGGAAGTTCGTTAAATTTTAGAATGGAGTATCTAATGTTGAAGAACTTTGGGTTTTTGGAAAAGCAGGAGTTTGTGGAGGAAGAATTGGAGTGGATATCGAACAAAGATGCATTTCCAATGGTGGAATCATTAGTGGACATATTGCCGAATCATCCGAGAATAGCTTCGAGCTATAATACGAATCATCAGAGCCCGATTTCGGTGCTCGACAACAGCAACAGCAGCAGCAGCAGCAGCGCTAACAGCCATCTAACTCATGGGAGTCTCAACAACAATAACATCAATAGTAATGGTGGTCGTGGGGGAAACATGATGTTGATTAATCTGTCAAGCGACTTTAAAGTGCCTGGTAAAGCAAGGAGCAAGCATGGGAGAAAGAGGAGAAAGGATATGTTGGGATCGCAGTTTAAATGCTTTGTCTATGAGAAGAAGGGTGCAAGGAAGCTGGCCTCATCTGTGTCGGCGTCTTCGAAGTCAAGCTCCACTCTTGGGAGGAAATGCCTGCATTGTGGGTCAGAGAAGACCCCGCAATGGCGGGCTGGTCCATCAGGGCCTAAAACTCTTTGTAATGCTTGTGGGGTTCGGTACAAATCAGGTCGTCTCTGTGATGAGTATCGGCCTGCTAGTAGCCCAACCTTTTCAAGCGATCTTCACTCAAATTCGCACCGGAAGATTGTTGAGATGAGGAGGCAGAAGATGCCGCTTACTGGCTCTGGGTCGAACTCGCTTGAGATAGGTTAGGTTTTGTAGTTTGTTCATCGCCTTTTCTTTCCTCACCGGTCTTTCTTTTTCGGGTTTTTAGCACAGAGTAGAAAAACAAGAGAAATTTAGCATTAAAGGGGGGTTGGCTTAATTATGTAATGGGATTTAGACTAATGAATTTGATCACATTGTTTGTTTTTTTGATCGGAAGGAAGAGCAGAGTAAAAGATCAAAGTTTTAGGGTCCAGGTTTTGGATTTAGGTTGTAGTGTGTCCTTGGGTTATGTGTTCTTAGAATTAGAATTAGAATTAGAATTAGAATGAATAGAAGTTGTTTTAGTCTATGGTCTAATCATTCTTTGTTCAATTGCTCTGGTAGTTTCTACCATCATCTTTAGGGGAAGGTGGATGATGAAATTAGATGAAGTTAGGTGTCGAAAAAAAAAGGGTCCGTAATTCTGTAAGCCTAGCTGCCGCTTGTGGTTTTCGCCAGCTAGATGATACTTTCTCCTTTTCAGGCCACCGAGTTATGGGAGGGAACTGTAATATATACCGTAGTTTAGTTTTACCAGTTGAAGTGATGTTGTGAGAATATTTGATTTAGATGTTGTATGCTTCATTTTTCCTGTATGCCCTTTAGTTTGTTCCAGGAATGATAGGTAGGGAGTTGCTTGTTAATGCTATCCTGGTAATGTAAGAATATTTGATTTACATGCTATATGCTTCATTTCCCTTTCGTTTTTGAATCAAGGTATATTCTCAGTTCCGGTAGTGATATGCACGAGTCTTTGATTGTGGCATAAAAACTTTCAGGTGAAATACCAAATTGGCAGTACAGTGTTGATTTTTCTGTGTACTTTAATTTGCTGAGACCTTGATTTCTTCCAAGTTGAAGGACTGTCTTTGAAATGCTGTTCTTCCAATTGCGATGGGAGCTTTAAAATTTGTGGTTTTGCGTAGTTTGAAAATGACACGGAAATATCAGCAATTTGTGTGGCATTCAAAGCTCTGCCTTCTTGGCCGGTGAAATTGGGTCTAAAAATCTTAATTGAATAAGTGGTTGCAAATGGCCTCTTTCTACCGTTAAGACTTCTTTGAAAGGG TGCACCCTCGTTTCCACCCAAAACCCTCGTACTTGTTTGAAGATAATACTCTTACGGTCTTACTTACTGGAAAAAACTCAAACGCGTCTCTCATTTCTCTTTCTCTCTCCTCCTTTCCCATTTTCCGTCCACACTCAAACGTCGCCGTCACAACCACCACTCACCGCTCTCTACTTTTCTCGCCCTCTTTCTTCCAATGGAGTCTTTTGACAAAGCCGCGCGTTTCATGGACGAACTCTTGGACTTCTCTTCCGACATCGGTGAAGAAGAAAGCGACGATGAAATTCCCGGAAATTCCTCCAAAAGTCACCACTTTCTTCACCACCACCGCCTTAATCACCGACGTCATAACCGCCAGTCCCCTCCTTTTGCTGAGTTTGTGGAGGAAGAATTGGAGTGGATATCGAACAAAGATGCATTTCCAATGGTGGAATCATTAGTGGACATATTGCCGAATCATCCGAGAATAGCTTCGAGCTATAATACGAATCATCAGAGCCCGATTTCGGTGCTCGACAACAGCAACAGCAGCAGCAGCAGCAGCGCTAACAGCCATCTAACTCATGGGAGTCTCAACAACAATAACATCAATAGTAATGGTGGTCGTGGGGGAAACATGATGTTGATTAATCTGTCAAGCGACTTTAAAGTGCCTGGTAAAGCAAGGAGCAAGCATGGGAGAAAGAGGAGAAAGGATATGTTGGGATCGCAGTTTAAATGCTTTGTCTATGAGAAGAAGGGTGCAAGGAAGCTGGCCTCATCTGTGTCGGCGTCTTCGAAGTCAAGCTCCACTCTTGGGAGGAAATGCCTGCATTGTGGGTCAGAGAAGACCCCGCAATGGCGGGCTGGTCCATCAGGGCCTAAAACTCTTTGTAATGCTTGTGGGGTTCGGTACAAATCAGGTCGTCTCTGTGATGAGTATCGGCCTGCTAGTAGCCCAACCTTTTCAAGCGATCTTCACTCAAATTCGCACCGGAAGATTGTTGAGATGAGGAGGCAGAAGATGCCGCTTACTGGCTCTGGGTCGAACTCGCTTGAGATAGGTGAAATACCAAATTGGCAGTACAGTGTTGATTTTTCTGTGTACTTTAATTTGCTGAGACCTTGATTTCTTCCAAGTTGAAGGACTGTCTTTGAAATGCTGTTCTTCCAATTGCGATGGGAGCTTTAAAATTTGTGGTTTTGCGTAGTTTGAAAATGACACGGAAATATCAGCAATTTGTGTGGCATTCAAAGCTCTGCCTTCTTGGCCGGTGAAATTGGGTCTAAAAATCTTAATTGAATAAGTGGTTGCAAATGGCCTCTTTCTACCGTTAAGACTTCTTTGAAAGGG ATGGAGTCTTTTGACAAAGCCGCGCGTTTCATGGACGAACTCTTGGACTTCTCTTCCGACATCGGTGAAGAAGAAAGCGACGATGAAATTCCCGGAAATTCCTCCAAAAGTCACCACTTTCTTCACCACCACCGCCTTAATCACCGACGTCATAACCGCCAGTCCCCTCCTTTTGCTGAGTTTGTGGAGGAAGAATTGGAGTGGATATCGAACAAAGATGCATTTCCAATGGTGGAATCATTAGTGGACATATTGCCGAATCATCCGAGAATAGCTTCGAGCTATAATACGAATCATCAGAGCCCGATTTCGGTGCTCGACAACAGCAACAGCAGCAGCAGCAGCAGCGCTAACAGCCATCTAACTCATGGGAGTCTCAACAACAATAACATCAATAGTAATGGTGGTCGTGGGGGAAACATGATGTTGATTAATCTGTCAAGCGACTTTAAAGTGCCTGGTAAAGCAAGGAGCAAGCATGGGAGAAAGAGGAGAAAGGATATGTTGGGATCGCAGTTTAAATGCTTTGTCTATGAGAAGAAGGGTGCAAGGAAGCTGGCCTCATCTGTGTCGGCGTCTTCGAAGTCAAGCTCCACTCTTGGGAGGAAATGCCTGCATTGTGGGTCAGAGAAGACCCCGCAATGGCGGGCTGGTCCATCAGGGCCTAAAACTCTTTGTAATGCTTGTGGGGTTCGGTACAAATCAGGTCGTCTCTGTGATGAGTATCGGCCTGCTAGTAGCCCAACCTTTTCAAGCGATCTTCACTCAAATTCGCACCGGAAGATTGTTGAGATGAGGAGGCAGAAGATGCCGCTTACTGGCTCTGGGTCGAACTCGCTTGAGATAGGTGAAATACCAAATTGGCAGTACAGTGTTGATTTTTCTGTGTACTTTAATTTGCTGAGACCTTGA MESFDKAARFMDELLDFSSDIGEEESDDEIPGNSSKSHHFLHHHRLNHRRHNRQSPPFAEFVEEELEWISNKDAFPMVESLVDILPNHPRIASSYNTNHQSPISVLDNSNSSSSSSANSHLTHGSLNNNNINSNGGRGGNMMLINLSSDFKVPGKARSKHGRKRRKDMLGSQFKCFVYEKKGARKLASSVSASSKSSSTLGRKCLHCGSEKTPQWRAGPSGPKTLCNACGVRYKSGRLCDEYRPASSPTFSSDLHSNSHRKIVEMRRQKMPLTGSGSNSLEIGEIPNWQYSVDFSVYFNLLRP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08253.1 vs. NCBI nr
Match: gi|902229594|gb|KNA21546.1| (hypothetical protein SOVF_042210 [Spinacia oleracea]) HSP 1 Score: 555.4 bits (1430), Expect = 5.900e-155 Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1
BLAST of Spo08253.1 vs. NCBI nr
Match: gi|590657224|ref|XP_007034503.1| (GATA transcription factor 1, putative [Theobroma cacao]) HSP 1 Score: 229.9 bits (585), Expect = 5.700e-57 Identity = 146/270 (54.07%), Postives = 171/270 (63.33%), Query Frame = 1
BLAST of Spo08253.1 vs. NCBI nr
Match: gi|802796066|ref|XP_012092669.1| (PREDICTED: GATA transcription factor 1 [Jatropha curcas]) HSP 1 Score: 226.5 bits (576), Expect = 6.300e-56 Identity = 136/276 (49.28%), Postives = 179/276 (64.86%), Query Frame = 1
BLAST of Spo08253.1 vs. NCBI nr
Match: gi|743916381|ref|XP_011002163.1| (PREDICTED: GATA transcription factor 1-like [Populus euphratica]) HSP 1 Score: 215.7 bits (548), Expect = 1.100e-52 Identity = 138/277 (49.82%), Postives = 162/277 (58.48%), Query Frame = 1
BLAST of Spo08253.1 vs. NCBI nr
Match: gi|743818666|ref|XP_011020707.1| (PREDICTED: GATA transcription factor 1 [Populus euphratica]) HSP 1 Score: 206.1 bits (523), Expect = 8.900e-50 Identity = 138/280 (49.29%), Postives = 164/280 (58.57%), Query Frame = 1
BLAST of Spo08253.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPU0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042210 PE=4 SV=1) HSP 1 Score: 555.4 bits (1430), Expect = 4.100e-155 Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1
BLAST of Spo08253.1 vs. UniProtKB/TrEMBL
Match: A0A061ESZ5_THECC (GATA transcription factor 1, putative OS=Theobroma cacao GN=TCM_020437 PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 4.000e-57 Identity = 146/270 (54.07%), Postives = 171/270 (63.33%), Query Frame = 1
BLAST of Spo08253.1 vs. UniProtKB/TrEMBL
Match: A0A067JC77_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06429 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 4.400e-56 Identity = 136/276 (49.28%), Postives = 179/276 (64.86%), Query Frame = 1
BLAST of Spo08253.1 vs. UniProtKB/TrEMBL
Match: B9GMH9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14130g PE=4 SV=2) HSP 1 Score: 205.3 bits (521), Expect = 1.100e-49 Identity = 140/284 (49.30%), Postives = 165/284 (58.10%), Query Frame = 1
BLAST of Spo08253.1 vs. UniProtKB/TrEMBL
Match: B9H003_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s17340g PE=4 SV=2) HSP 1 Score: 204.1 bits (518), Expect = 2.300e-49 Identity = 136/274 (49.64%), Postives = 160/274 (58.39%), Query Frame = 1
BLAST of Spo08253.1 vs. ExPASy Swiss-Prot
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2) HSP 1 Score: 176.4 bits (446), Expect = 4.700e-43 Identity = 124/291 (42.61%), Postives = 168/291 (57.73%), Query Frame = 1
BLAST of Spo08253.1 vs. ExPASy Swiss-Prot
Match: GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 3.000e-29 Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = 1
BLAST of Spo08253.1 vs. ExPASy Swiss-Prot
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 3.600e-27 Identity = 65/136 (47.79%), Postives = 83/136 (61.03%), Query Frame = 1
BLAST of Spo08253.1 vs. ExPASy Swiss-Prot
Match: GATA6_ARATH (GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.100e-26 Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 1
BLAST of Spo08253.1 vs. ExPASy Swiss-Prot
Match: GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.800e-26 Identity = 73/151 (48.34%), Postives = 87/151 (57.62%), Query Frame = 1
BLAST of Spo08253.1 vs. TAIR (Arabidopsis)
Match: AT3G24050.1 (GATA transcription factor 1) HSP 1 Score: 176.4 bits (446), Expect = 2.600e-44 Identity = 124/291 (42.61%), Postives = 168/291 (57.73%), Query Frame = 1
BLAST of Spo08253.1 vs. TAIR (Arabidopsis)
Match: AT5G66320.1 (GATA transcription factor 5) HSP 1 Score: 130.6 bits (327), Expect = 1.700e-30 Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = 1
BLAST of Spo08253.1 vs. TAIR (Arabidopsis)
Match: AT3G60530.1 (GATA transcription factor 4) HSP 1 Score: 123.6 bits (309), Expect = 2.000e-28 Identity = 65/136 (47.79%), Postives = 83/136 (61.03%), Query Frame = 1
BLAST of Spo08253.1 vs. TAIR (Arabidopsis)
Match: AT3G51080.1 (GATA transcription factor 6) HSP 1 Score: 122.1 bits (305), Expect = 5.900e-28 Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 1
BLAST of Spo08253.1 vs. TAIR (Arabidopsis)
Match: AT2G45050.1 (GATA transcription factor 2) HSP 1 Score: 121.3 bits (303), Expect = 1.000e-27 Identity = 73/151 (48.34%), Postives = 87/151 (57.62%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08253.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08253.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08253.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08253.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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