Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGCGATCAAACCCTTAGCCACAGCCGCCGGATCCCTCCGTGCCAGACTAACTCAAACTCTCCGAACCCGTGGCGGTGGAGGAATCGACAGATGGACAAGCCCAGGTCACCAAGAACGTCCCAACGGCTACCTCTTCAACCGCCCGCCACCACCACCTGGTCAGTCCCGTAAATGGGAAGACTGGGAATTGCCCTGCTACGTCACCAGCTTCCTCACCATTGTCATCCTTGGTGTTGGTCTTACCGCTAAGCCCGATCTCACCCTCGAGACTTGGGCCCATCAGAAAGCCCTCGAACGCCTCCAGGCCCAACAGCTTTCTTCTGACTCCTCTGAGTAA ATGGTGGCGATCAAACCCTTAGCCACAGCCGCCGGATCCCTCCGTGCCAGACTAACTCAAACTCTCCGAACCCGTGGCGGTGGAGGAATCGACAGATGGACAAGCCCAGGTCACCAAGAACGTCCCAACGGCTACCTCTTCAACCGCCCGCCACCACCACCTGGTCAGTCCCGTAAATGGGAAGACTGGGAATTGCCCTGCTACGTCACCAGCTTCCTCACCATTGTCATCCTTGGTGTTGGTCTTACCGCTAAGCCCGATCTCACCCTCGAGACTTGGGCCCATCAGAAAGCCCTCGAACGCCTCCAGGCCCAACAGCTTTCTTCTGACTCCTCTGAGTAA ATGGTGGCGATCAAACCCTTAGCCACAGCCGCCGGATCCCTCCGTGCCAGACTAACTCAAACTCTCCGAACCCGTGGCGGTGGAGGAATCGACAGATGGACAAGCCCAGGTCACCAAGAACGTCCCAACGGCTACCTCTTCAACCGCCCGCCACCACCACCTGGTCAGTCCCGTAAATGGGAAGACTGGGAATTGCCCTGCTACGTCACCAGCTTCCTCACCATTGTCATCCTTGGTGTTGGTCTTACCGCTAAGCCCGATCTCACCCTCGAGACTTGGGCCCATCAGAAAGCCCTCGAACGCCTCCAGGCCCAACAGCTTTCTTCTGACTCCTCTGAGTAA MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08258.1 vs. NCBI nr
Match: gi|902187184|gb|KNA10863.1| (hypothetical protein SOVF_140370 [Spinacia oleracea]) HSP 1 Score: 231.9 bits (590), Expect = 5.600e-58 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1
BLAST of Spo08258.1 vs. NCBI nr
Match: gi|731324007|ref|XP_010672735.1| (PREDICTED: uncharacterized protein LOC104889254 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 200.3 bits (508), Expect = 1.800e-48 Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 1
BLAST of Spo08258.1 vs. NCBI nr
Match: gi|661886166|emb|CDP10088.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 181.8 bits (460), Expect = 6.700e-43 Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 1
BLAST of Spo08258.1 vs. NCBI nr
Match: gi|698509052|ref|XP_009799759.1| (PREDICTED: uncharacterized protein LOC104245788 [Nicotiana sylvestris]) HSP 1 Score: 180.6 bits (457), Expect = 1.500e-42 Identity = 85/110 (77.27%), Postives = 97/110 (88.18%), Query Frame = 1
BLAST of Spo08258.1 vs. NCBI nr
Match: gi|1021041287|gb|KZM99068.1| (hypothetical protein DCAR_013570 [Daucus carota subsp. sativus]) HSP 1 Score: 180.3 bits (456), Expect = 1.900e-42 Identity = 88/114 (77.19%), Postives = 97/114 (85.09%), Query Frame = 1
BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVX0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140370 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 3.900e-58 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1
BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTK8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g060930 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 1.300e-48 Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 1
BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A068UR47_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030693001 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.600e-43 Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 1
BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A165YGN5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013570 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 1.400e-42 Identity = 88/114 (77.19%), Postives = 97/114 (85.09%), Query Frame = 1
BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A118JWW1_CYNCS (NADH:ubiquinone oxidoreductase, ESSS subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_003207 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 3.300e-41 Identity = 85/115 (73.91%), Postives = 96/115 (83.48%), Query Frame = 1
BLAST of Spo08258.1 vs. TAIR (Arabidopsis)
Match: AT3G57785.1 (unknown protein) HSP 1 Score: 151.4 bits (381), Expect = 3.400e-37 Identity = 77/117 (65.81%), Postives = 89/117 (76.07%), Query Frame = 1
BLAST of Spo08258.1 vs. TAIR (Arabidopsis)
Match: AT2G42310.1 (unknown protein) HSP 1 Score: 143.3 bits (360), Expect = 9.300e-35 Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08258.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08258.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo08258.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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