Spo08308 (gene)

Overview
NameSpo08308
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionEukaryotic translation initiation factor 5A-1
LocationSpoScf_00369 : 473021 .. 476326 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATATTTGGTGTTAAACACACAAAATGTCAAATAGGACAACCGTTTAGGAACGGAAGGGCGATCAATAACAAACCTTACTCTTGTATACTCCGTACTCCATAAATAGTCTTTAAGCGATCAATAAGAATACTCTTTAAACTAGCACATTCGCTTTCTATCTACGCGCACGGCGGCGCTTTTCTGTGTGTTTGCTGAATTAGGGTTTCTCATTTTCCTCTCTCCTCGACTTGAAGCCCATAGCCATGTCTGACGAAGAACACCAGTTCGAATCGAAGGCTGACGCTGGCGCCTCAAAGACCTACCCACAGCAAGCTGGTACCATCCGTAAGAACGGTTATATCGTCATCAAGAATCGCCCTTGCAAGGTTTAACACCAATTTCTCTTGTTTCAAATTTCTGTGTAGTTTTCTGATTTTCAAATTTCTGTGTAGTTTTCTGATTTCAAATTTCCATGGATTTCACTGGAAAATAACCTGAAATTGAATAATTTCACTACATTTATTAGTTCGTATTTTAGGGTTTTAGTGTGATCGATTTGTACAGATAATGTTTGATTTGTTTGGCATTTTGGATATGGGTTCCCATTCGATTTGTTTGGAGAGTGGAGGTTTTCATTTGTTTTTATTATGTAAATCGATTTGTGTTTTTCCGGGGCATTCATATTTAAATGATACGAGTACTGATTTTATGACATGATCTGTTGCGTAATTGAGAGAAACAGATGTGCTGTATTAGATTGAGGATGAATACTGATACGATTTTCGATTTTCAATTTGAATTTTAGGATTTGTAGATTGTATCAAAGTTACTTTTTAGTTTTCGGATGTGGATTTATAGTATTGTGGTAATAATGTTTTGGACTGAGTCCATGGTTTTCTTGGTGTTGTCGAGCATGTGCACAGGCTCGTGATAGTTCGATTATGTTTCGGCTGTTTTCTTACTTTAAATTTTGAGTTCTCTCTCTGTGCTCTTGTGATTCTTGTGAATGAAATGTCAGAGCTGTTCTTCTATGTGCGTGTATTACTGTAAGCCTATCCGCCTATGTAATGGGCCTCACTTTTTAGACTAAGGTTGAAAGAAATGTCGGGGAAAGGATCATCAATGTTTTTTTGCTTCTTCTAATATTTGGTTAATTAATAGTTGAAGGGTAATTAATTGGTTATTAACTTGTCGATTGACCACCATGACCTCAAGTGTTTCAGTGTGTTTTTGACCTCTTATGCTGGAATGATTTTTTTTTTTAATTTGATGGCAACTTAGAAGGGAAAGTTGATAATTGCAAACAGCACTATTAGAACTCTGGATGCATTGAGAACAGATCGCTCACCATAAATCTTGATTTTATGTGGCAGGTTGTTGAAGTTTCCACTTCTAAAACTGGCAAGCACGGTCATGCTAAGTGTAACTTTGTTGGTATTGACATCTTCAATGGGAAGAAGCTTGAAGATATTGTTCCATCTTCTCACAATTGTGATGTGCGCTACCTTATCAGTTTTTTCCTTTCTTCCTTCTTCTTCGTTGTGTCCTTTGCTTGAACTTTTATATATTTTATTATGGTTTTCAGGTTCCCCACGTCAATCGTACCGATTATCAGCTCATTGACATAGCTGAGGATGGTTTTGTAAGTACAATAATATCTAATGTGGTTTTATTTGTTTTGAGCTTTTATTTTTTGGTCAGCTATTGTCTAAGCCAAATAATATTTCAGGTTAGCCTGCTGACTGAGAGTGGAGGTACAAAGGATGACTTGAAGCTGCCAACTGATGAAACTCTTCTTAAGCAGGTATTTTACCTACAGTGCGCTACATAATTTAACTTGCTTATTCCCTCTTCTATGGTCCTTAACTCTTTATATGATGAAAAGATTCTATTTTACCAAGTTATAATCCTTTAATTTCACATGTCTGGGAGTCCATACTGTAATCTGGAGAAGAAGAGAGAAAGAGCCTAGGGGGAAGATGAAGGATTTTCTTCCTTTTTAAGAGAGGGGAGTGTTTAGAAATTTTTGAAAAAGGCAGTTTACACTAGAAAGGTGACCTAGAAGTTGGGTAAGAGGTAGGGATAAAGACGGGGGAGTTTTAGGAGAGTAAAGGAGATGGAGGGTTTTTTGTAAAATTTTGGGAGTGTGCAAAGAAATTTCAAGGTGTTACAACTGCTTTTGTATTTAAAAGAGTGCTGATTTTATTGCTTATGATGGCTTTACTCCTTTTTTTCATACTTTACCCTTTATATTTAAGTTCCTTCATTTTTATCAAAATAATCCTAGTAACAAAGTTTCTGTAGTCTCAAATGTTACTTACCAAGTGTACATAAAATTATAAAATGGACATGACTATTGGAATTGTCTTTAGACATATTGGGGATGTGTTGGATCTTGGATGCGTGCTTTCTGTAAGTTTGCTACTTGAAGTTTCCAAGGAACCTATGTATTTTGTCGTTTGTCTTGGGATTTAGTAGGTTTTTGTTGTTGTGTATCACTCACTTCAGTTGAAAGAGGGCTGAAGTACAAAAATTATGAACTAAAGTATTTCTGCAAGTTTATAATGTGATCATAGTAACTCCCCTTTGGATCTTAATTTCTATACAATTGTCAAGTTACCAATATTTTGCATTGCTTTATGTACAACAGCTCAAGGAAGGATTTGCGGATGGAAAAGACCTGATTGTGAGTGTTCAGAATGCCATGGGAGAAGAACAAATTTGTGGCGTCAAGGATATTGGTGGTGGATCTAAGTAGGTGATTTGGGATGTGATTTGTGATGGGTTCAAGTTGTTTGAGGCAGAACCTGAAATATTTGTAGTACGGAGTATTTGCTGTACTGAGATTTTATGTGTGATTATGCTGGGAACGACTTCTGTCATTAGCTCCTTTTCCAAAGGTTACTCTCTCTATGTTGAGTTCTATCAGGGAATTTCACGTGGTGTTTTTCTTATTAATCCCATATTGATATTTGATGCCTTGATATGACAAATCTATATGAGAAATTTTGTCCTCTTAACTTAAGCCACTAATCCTCAGATCTGAAATGGAATAGTTCTTGTTCGACTGCAGGTAATTAATGTGAAATAATAGCTCTCTAGTCTACATGATTGGATGATTGTCATAGTTTTTTTTTTTCTGAAAATGGTTGTGAACAGGCGAATAGCAGTCATTCCACGAGGAAGTATAAATCAATACTCCCTCCGAATTTATTTAAGAGATACACTTGGCCAGGCATCGGTATTAAGAAAAAGAATTAAATAAAATAAAATAATAAAGCAAGTGGGGTTGTTTAGTTATTTAATAAGTAAACAAGTAGATACC

mRNA sequence

TTATATTTGGTGTTAAACACACAAAATGTCAAATAGGACAACCGTTTAGGAACGGAAGGGCGATCAATAACAAACCTTACTCTTGTATACTCCGTACTCCATAAATAGTCTTTAAGCGATCAATAAGAATACTCTTTAAACTAGCACATTCGCTTTCTATCTACGCGCACGGCGGCGCTTTTCTGTGTGTTTGCTGAATTAGGGTTTCTCATTTTCCTCTCTCCTCGACTTGAAGCCCATAGCCATGTCTGACGAAGAACACCAGTTCGAATCGAAGGCTGACGCTGGCGCCTCAAAGACCTACCCACAGCAAGCTGGTACCATCCGTAAGAACGGTTATATCGTCATCAAGAATCGCCCTTGCAAGGTTGTTGAAGTTTCCACTTCTAAAACTGGCAAGCACGGTCATGCTAAGTGTAACTTTGTTGGTATTGACATCTTCAATGGGAAGAAGCTTGAAGATATTGTTCCATCTTCTCACAATTGTGATGTTCCCCACGTCAATCGTACCGATTATCAGCTCATTGACATAGCTGAGGATGGTTTTGTTAGCCTGCTGACTGAGAGTGGAGGTACAAAGGATGACTTGAAGCTGCCAACTGATGAAACTCTTCTTAAGCAGCTCAAGGAAGGATTTGCGGATGGAAAAGACCTGATTGTGAGTGTTCAGAATGCCATGGGAGAAGAACAAATTTGTGGCGTCAAGGATATTGGTGGTGGATCTAAGTAGGTGATTTGGGATGTGATTTGTGATGGGTTCAAGTTGTTTGAGGCAGAACCTGAAATATTTGTAGTACGGAGTATTTGCTGTACTGAGATTTTATGTGTGATTATGCTGGGAACGACTTCTGTCATTAGCTCCTTTTCCAAAGGTTACTCTCTCTATGTTGAGTTCTATCAGGGAATTTCACGTGGTGTTTTTCTTATTAATCCCATATTGATATTTGATGCCTTGATATGACAAATCTATATGAGAAATTTTGTCCTCTTAACTTAAGCCACTAATCCTCAGATCTGAAATGGAATAGTTCTTGTTCGACTGCAGGTAATTAATGTGAAATAATAGCTCTCTAGTCTACATGATTGGATGATTGTCATAGTTTTTTTTTTTCTGAAAATGGTTGTGAACAGGCGAATAGCAGTCATTCCACGAGGAAGTATAAATCAATACTCCCTCCGAATTTATTTAAGAGATACACTTGGCCAGGCATCGGTATTAAGAAAAAGAATTAAATAAAATAAAATAATAAAGCAAGTGGGGTTGTTTAGTTATTTAATAAGTAAACAAGTAGATACC

Coding sequence (CDS)

ATGTCTGACGAAGAACACCAGTTCGAATCGAAGGCTGACGCTGGCGCCTCAAAGACCTACCCACAGCAAGCTGGTACCATCCGTAAGAACGGTTATATCGTCATCAAGAATCGCCCTTGCAAGGTTGTTGAAGTTTCCACTTCTAAAACTGGCAAGCACGGTCATGCTAAGTGTAACTTTGTTGGTATTGACATCTTCAATGGGAAGAAGCTTGAAGATATTGTTCCATCTTCTCACAATTGTGATGTTCCCCACGTCAATCGTACCGATTATCAGCTCATTGACATAGCTGAGGATGGTTTTGTTAGCCTGCTGACTGAGAGTGGAGGTACAAAGGATGACTTGAAGCTGCCAACTGATGAAACTCTTCTTAAGCAGCTCAAGGAAGGATTTGCGGATGGAAAAGACCTGATTGTGAGTGTTCAGAATGCCATGGGAGAAGAACAAATTTGTGGCGTCAAGGATATTGGTGGTGGATCTAAGTAG

Protein sequence

MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTDETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08308.1Spo08308.1mRNA


Homology
[Close]
BLAST of Spo08308.1 vs. NCBI nr
Match: gi|902179658|gb|KNA09394.1| (hypothetical protein SOVF_153970 [Spinacia oleracea])

HSP 1 Score: 328.9 bits (842), Expect = 4.800e-87
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK 162
           ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK
Sbjct: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK 161
[Close]
BLAST of Spo08308.1 vs. NCBI nr
Match: gi|731343825|ref|XP_010683085.1| (PREDICTED: eukaryotic translation initiation factor 5A-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 312.0 bits (798), Expect = 6.100e-82
Identity = 152/161 (94.41%), Postives = 157/161 (97.52%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEHQFESKAD+GASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF
Sbjct: 1   MSDEEHQFESKADSGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDIAED FVSLLTE+G TKDDLKLP+D
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDDFVSLLTETGDTKDDLKLPSD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK 162
           E LLKQLKEGFADGKDLIVSVQ+AMGEEQICGVKDIGGGSK
Sbjct: 121 EALLKQLKEGFADGKDLIVSVQSAMGEEQICGVKDIGGGSK 161
[Close]
BLAST of Spo08308.1 vs. NCBI nr
Match: gi|731343827|ref|XP_010683086.1| (PREDICTED: eukaryotic translation initiation factor 5A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 300.8 bits (769), Expect = 1.400e-78
Identity = 146/157 (92.99%), Postives = 152/157 (96.82%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIF GKKLEDIVPSSHN DVPHVNRTDYQLIDI+EDGFVSLLT+SG TKDDLKLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           E LLKQLK+GFA+GKDLIVSV NAMGEEQICG+KDIG
Sbjct: 121 EALLKQLKDGFAEGKDLIVSVMNAMGEEQICGLKDIG 157
[Close]
BLAST of Spo08308.1 vs. NCBI nr
Match: gi|922356332|ref|XP_003613947.2| (eukaryotic translation initiation factor 5A4 [Medicago truncatula])

HSP 1 Score: 300.1 bits (767), Expect = 2.400e-78
Identity = 144/157 (91.72%), Postives = 152/157 (96.82%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDI+EDGFVSLLTESGGTKDDLKLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           ETLL Q+K+GF +GKDLIVSV +AMGEEQICG+KDIG
Sbjct: 121 ETLLSQIKDGFGEGKDLIVSVMSAMGEEQICGLKDIG 157
[Close]
BLAST of Spo08308.1 vs. NCBI nr
Match: gi|731343821|ref|XP_010683083.1| (PREDICTED: eukaryotic translation initiation factor 5A-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 299.3 bits (765), Expect = 4.100e-78
Identity = 145/157 (92.36%), Postives = 152/157 (96.82%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIF GKKLEDIVPSSHN DVPHVNRTDYQLIDI+EDGFVSLLT+SG TKDDLKLP+D
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLKLPSD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           E LLKQLK+GFA+GKDLIVSV NAMGEEQICG+KDIG
Sbjct: 121 EALLKQLKDGFAEGKDLIVSVMNAMGEEQICGLKDIG 157
[Close]
BLAST of Spo08308.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQ33_SPIOL (Eukaryotic translation initiation factor 5A OS=Spinacia oleracea GN=SOVF_153970 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.400e-87
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK 162
           ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK
Sbjct: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK 161
[Close]
BLAST of Spo08308.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZN9_BETVU (Eukaryotic translation initiation factor 5A OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153140 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.200e-82
Identity = 152/161 (94.41%), Postives = 157/161 (97.52%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEHQFESKAD+GASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF
Sbjct: 1   MSDEEHQFESKADSGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDIAED FVSLLTE+G TKDDLKLP+D
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDDFVSLLTETGDTKDDLKLPSD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGGSK 162
           E LLKQLKEGFADGKDLIVSVQ+AMGEEQICGVKDIGGGSK
Sbjct: 121 EALLKQLKEGFADGKDLIVSVQSAMGEEQICGVKDIGGGSK 161
[Close]
BLAST of Spo08308.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EUZ0_BETVU (Eukaryotic translation initiation factor 5A OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153150 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 9.800e-79
Identity = 146/157 (92.99%), Postives = 152/157 (96.82%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIF GKKLEDIVPSSHN DVPHVNRTDYQLIDI+EDGFVSLLT+SG TKDDLKLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           E LLKQLK+GFA+GKDLIVSV NAMGEEQICG+KDIG
Sbjct: 121 EALLKQLKDGFAEGKDLIVSVMNAMGEEQICGLKDIG 157
[Close]
BLAST of Spo08308.1 vs. UniProtKB/TrEMBL
Match: B7FM94_MEDTR (Eukaryotic translation initiation factor 5A OS=Medicago truncatula GN=MTR_5g042990 PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.700e-78
Identity = 144/157 (91.72%), Postives = 152/157 (96.82%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDI+EDGFVSLLTESGGTKDDLKLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           ETLL Q+K+GF +GKDLIVSV +AMGEEQICG+KDIG
Sbjct: 121 ETLLSQIKDGFGEGKDLIVSVMSAMGEEQICGLKDIG 157
[Close]
BLAST of Spo08308.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4M0_BETVU (Eukaryotic translation initiation factor 5A OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153120 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.800e-78
Identity = 145/157 (92.36%), Postives = 152/157 (96.82%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIF GKKLEDIVPSSHN DVPHVNRTDYQLIDI+EDGFVSLLT+SG TKDDLKLP+D
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLKLPSD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           E LLKQLK+GFA+GKDLIVSV NAMGEEQICG+KDIG
Sbjct: 121 EALLKQLKDGFAEGKDLIVSVMNAMGEEQICGLKDIG 157
[Close]
BLAST of Spo08308.1 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 292.4 bits (747), Expect = 3.100e-78
Identity = 138/157 (87.90%), Postives = 151/157 (96.18%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKC+F
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDI+EDGFVSLLTE+G TKDDL+LPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           E LL Q+K+GFA+GKDL+VSV +AMGEE+IC +KDIG
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIG 157
[Close]
BLAST of Spo08308.1 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.600e-77
Identity = 137/157 (87.26%), Postives = 151/157 (96.18%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEH FESKADAGASKTYPQQAGTIRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           V IDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDI+EDGFVSLLTE+G TKDDL+LPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           +TLL Q+K+GFA+GKDL++SV +AMGEEQICG+KDIG
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIG 157
[Close]
BLAST of Spo08308.1 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.000e-77
Identity = 137/157 (87.26%), Postives = 150/157 (95.54%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEH FESKADAGASKTYPQQAGTIRK G+IVIKNRPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           V IDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDI+EDGFVSLLTE+G TKDDL+LPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           +TLL Q+K+GFA+GKDL++SV +AMGEEQICG+KDIG
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIG 157
[Close]
BLAST of Spo08308.1 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 2.600e-77
Identity = 139/157 (88.54%), Postives = 149/157 (94.90%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDI+EDGFVSLLTESG TKDDL+LPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           E+LLKQ+K+GF +GKDL+VSV +AMGEEQI  +KDIG
Sbjct: 121 ESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIG 157
[Close]
BLAST of Spo08308.1 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.500e-77
Identity = 137/157 (87.26%), Postives = 149/157 (94.90%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEH FE  ADAGASKTYPQQAGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDI+EDGFVSLLT++G TKDDLKLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           ++LL Q+K+GFADGKDL+VSV +AMGEEQIC +KDIG
Sbjct: 121 DSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIG 157
[Close]
BLAST of Spo08308.1 vs. TAIR (Arabidopsis)
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1)

HSP 1 Score: 274.2 bits (700), Expect = 5.000e-74
Identity = 133/157 (84.71%), Postives = 145/157 (92.36%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSDEEH FES +DAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           V IDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDI+EDG+VSLLT++G TKDDLKLP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           +TLL+Q+K GF DGKDL+VSV +AMGEEQI  +KDIG
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIG 156
[Close]
BLAST of Spo08308.1 vs. TAIR (Arabidopsis)
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3)

HSP 1 Score: 264.6 bits (675), Expect = 3.900e-71
Identity = 126/157 (80.25%), Postives = 141/157 (89.81%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSD+EH FES +DAGASKTYPQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           V IDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDLKLPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIG 158
           E LL QLK GF +GKD++VSV +AMGEEQ+C +K++G
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVG 156
[Close]
BLAST of Spo08308.1 vs. TAIR (Arabidopsis)
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein)

HSP 1 Score: 262.3 bits (669), Expect = 2.000e-70
Identity = 124/159 (77.99%), Postives = 142/159 (89.31%), Query Frame = 1 

		  

Query: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCNF 60
           MSD+EH FE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKC+F
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFVSLLTESGGTKDDLKLPTD 120
           V IDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI EDGFVSLLT+SGGTKDDLKLPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 ETLLKQLKEGFADGKDLIVSVQNAMGEEQICGVKDIGGG 160
           + L  Q++ GF +GKD++VSV ++MGEEQIC VK++GGG
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVGGG 158
The following BLAST results are available for this feature:
BLAST of Spo08308.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902179658|gb|KNA09394.1|4.8e-87100.hypothetical protein SOVF_1539... [more]
gi|731343825|ref|XP_010683085.1|6.1e-8294.4PREDICTED: eukaryotic translat... [more]
gi|731343827|ref|XP_010683086.1|1.4e-7892.9PREDICTED: eukaryotic translat... [more]
gi|922356332|ref|XP_003613947.2|2.4e-7891.7eukaryotic translation initiat... [more]
gi|731343821|ref|XP_010683083.1|4.1e-7892.3PREDICTED: eukaryotic translat... [more]
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BLAST of Spo08308.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QQ33_SPIOL3.4e-87100.Eukaryotic translation initiat... [more]
A0A0J8BZN9_BETVU4.2e-8294.4Eukaryotic translation initiat... [more]
A0A0J8EUZ0_BETVU9.8e-7992.9Eukaryotic translation initiat... [more]
B7FM94_MEDTR1.7e-7891.7Eukaryotic translation initiat... [more]
A0A0J8C4M0_BETVU2.8e-7892.3Eukaryotic translation initiat... [more]
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BLAST of Spo08308.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IF5A_MANES3.1e-7887.9Eukaryotic translation initiat... [more]
IF5A5_SOLTU1.6e-7787.2Eukaryotic translation initiat... [more]
IF5A1_SOLLC2.0e-7787.2Eukaryotic translation initiat... [more]
IF5A3_SOLTU2.6e-7788.5Eukaryotic translation initiat... [more]
IF5A2_MEDSA4.5e-7787.2Eukaryotic translation initiat... [more]
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BLAST of Spo08308.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G13950.15.0e-7484.7eukaryotic elongation factor 5... [more]
AT1G69410.13.9e-7180.2eukaryotic elongation factor 5... [more]
AT1G26630.12.0e-7077.9Eukaryotic translation initiat... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5APIRPIRSF003025Transl_init_eIF5Acoord: 1..157
score: 2.3
IPR001884Translation elongation factor IF5APANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A-RELATEDcoord: 2..159
score: 6.4E
IPR001884Translation elongation factor IF5ATIGRFAMsTIGR00037TIGR00037coord: 17..153
score: 1.4
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 15..93
score: 1.81
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 86..157
score: 1.7
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 86..156
score: 2.4
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 15..84
score: 3.7
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
scor
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..154
score: 8.2
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 85..154
score: 2.1
NoneNo IPR availablePANTHERPTHR11673:SF8SUBFAMILY NOT NAMEDcoord: 2..159
score: 6.4E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006452 translational frameshifting
biological_process GO:0006414 translational elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0071806 protein transmembrane transport
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0006522 alanine metabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005840 ribosome
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression