Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAATAGTGGGATCTACATTGGGTCGATGTTACAATTGTTGTACATATAAATCACCAATTCATTTGAGGAACTACTACAATGAGCAATTGGATTTCAGAACTTCCTCAATGCTTGTATTGAGGCCGAGAAATCCTGCAATTTTTAATGGGTTTGTTGGTGTGGTTTCGATGATTAATGGCTCGAGTGTTAAGCAGCATTCTCTGAAGTCTGTCGCATATGAAAATCAAGATGATGTACTTGATGAAGAAGATGAAGAAGAAGGGCTGTGCCCTGTTGAATGTGTGAGAGAATTCAAGACTGATGAAGAATTCTCGAGAATTTTAGAGAAGGCCAAGAAGAAGAATACTTTAGTTGTAGTAGACTTTTACCGTACTTCTTGTGGCAGCTGCAAATACATCGAGAAAGGGTTTTCGAAACTCTGCAAAGCTTCTGGTAGTGATGACGTTCCTGTCATATTCTTAAAGCATAATGTGAGAACTCATCCACTATTTTTCCTTTGGTCTTGCATTTTCCTCATTTACTTTTCTTGGTTTATCTTCCTGTTATTGGCTCCTGTCAAAGGAGATTTTTAGCATTTGATTTGACTATTTCAGTCTCTATTATGTCATGTGTTGCAGGTTATTGATGAATATGATGAGCAATCAGAGGTTGCTGATCGACTTAGAATCAAGGTGAAATATCTGGATCCTTATACTTTCTGCATTACTTTCTATCTTTTCAGTTTTATCATGCATGTATCTCAGTCAAATCGCTGAGGACATAGGTTTAGTCGAGCTCATAGAGTTAGTAGAAAGCATATTGTTGTCTCGATCTCGGTTTGTCTGGTGGGACTGCCTGCACCTGTAAATTGGCAATAGTGGAACAAACATAAGCTCTGATACCATGTTAAATTTCATAGAATATACCATATCAATATGAATGGGTCTGAGCAATCTAATACAGAAAAAGAGAGTTCGTTGCACTTATAATCCCAACAGAGGTTCCACATTAAAACCAATTGGCTATAGTAGGAGTAACTACTCAGGCTTATAAGTTATTATTTTCTCTTCTCTTTGCCTATGTGGGACAACTCACATGTGGGTAACATTGAGTTTCAATAGAAGTTGGGTAGCCTTTTTGGAAATAATTGGTTTTTATCTGAAGTTTATTTCACCTGAAACTTATGTAGTAATTCTATAAGGAGAAAAGAACAAGTCATACACGTACACCTAGCCTATTGCATCTGAAAACTTGACGCTTATAGCTATAGAATGGGTGTTTTGTAATGCAGACAGTTCCTCTATTCCACTTCTACAAAAACGGGGTTCTGCTAGAAGCATTTCCAACCAGAGACAAAGAAAGAGTCACAGAGGCAATCTATAAGTATTCGTCAATGTCATCTCCTGCACCTCAAGAGAGTACAAACTAGTTCCTTAAACAAACTGTTATATATATATACTTGTATTTCTGTCTATACACATAATTGGTAATTCATGATGACTAGATGTCCTTAATTACATAAGTCTTTAATATGAAGTTTACTTCAGCCAACGGTCGGTCTGGGCCGGGGTGATTGACTGTATCAGTTACCAACTCAGCAGTCTTTGTCAGGGAAGATGTCTTGGACTCCCCTTCCCTAACTAATAATAATTTGTACAATCATTCTTCGGGGATGAATTTCTGTAAATCAAAATCTCTTATGCCATCAACTGGTGAGAGACATTGTTGGGTTAATGTTTTTACTGGTGATTGAATAATTTACTTCCCCCTTGTCCAGAAATTTTCAAGCATGTTCTGATTTCTTAAATTTCATTTATTTGTATTTCCACCCTTTAAAAAACAGCAAGGAATACTAGCTGTTTGAAG ATGACAATAGTGGGATCTACATTGGGTCGATGTTACAATTGTTGTACATATAAATCACCAATTCATTTGAGGAACTACTACAATGAGCAATTGGATTTCAGAACTTCCTCAATGCTTGTATTGAGGCCGAGAAATCCTGCAATTTTTAATGGGTTTGTTGGTGTGGTTTCGATGATTAATGGCTCGAGTGTTAAGCAGCATTCTCTGAAGTCTGTCGCATATGAAAATCAAGATGATGTACTTGATGAAGAAGATGAAGAAGAAGGGCTGTGCCCTGTTGAATGTGTGAGAGAATTCAAGACTGATGAAGAATTCTCGAGAATTTTAGAGAAGGCCAAGAAGAAGAATACTTTAGTTGTAGTAGACTTTTACCGTACTTCTTGTGGCAGCTGCAAATACATCGAGAAAGGGTTTTCGAAACTCTGCAAAGCTTCTGGTAGTGATGACGTTCCTGTCATATTCTTAAAGCATAATGTTATTGATGAATATGATGAGCAATCAGAGGTTGCTGATCGACTTAGAATCAAGACAGTTCCTCTATTCCACTTCTACAAAAACGGGGTTCTGCTAGAAGCATTTCCAACCAGAGACAAAGAAAGAGTCACAGAGGCAATCTATAAGTATTCGTCAATGTCATCTCCTGCACCTCAAGAGAGTACAAACTAGTTCCTTAAACAAACTGTTATATATATATACTTGTATTTCTGTCTATACACATAATTGGTAATTCATGATGACTAGATGTCCTTAATTACATAAGTCTTTAATATGAAGTTTACTTCAGCCAACGGTCGGTCTGGGCCGGGGTGATTGACTGTATCAGTTACCAACTCAGCAGTCTTTGTCAGGGAAGATGTCTTGGACTCCCCTTCCCTAACTAATAATAATTTGTACAATCATTCTTCGGGGATGAATTTCTGTAAATCAAAATCTCTTATGCCATCAACTGGTGAGAGACATTGTTGGGTTAATGTTTTTACTGGTGATTGAATAATTTACTTCCCCCTTGTCCAGAAATTTTCAAGCATGTTCTGATTTCTTAAATTTCATTTATTTGTATTTCCACCCTTTAAAAAACAGCAAGGAATACTAGCTGTTTGAAG ATGACAATAGTGGGATCTACATTGGGTCGATGTTACAATTGTTGTACATATAAATCACCAATTCATTTGAGGAACTACTACAATGAGCAATTGGATTTCAGAACTTCCTCAATGCTTGTATTGAGGCCGAGAAATCCTGCAATTTTTAATGGGTTTGTTGGTGTGGTTTCGATGATTAATGGCTCGAGTGTTAAGCAGCATTCTCTGAAGTCTGTCGCATATGAAAATCAAGATGATGTACTTGATGAAGAAGATGAAGAAGAAGGGCTGTGCCCTGTTGAATGTGTGAGAGAATTCAAGACTGATGAAGAATTCTCGAGAATTTTAGAGAAGGCCAAGAAGAAGAATACTTTAGTTGTAGTAGACTTTTACCGTACTTCTTGTGGCAGCTGCAAATACATCGAGAAAGGGTTTTCGAAACTCTGCAAAGCTTCTGGTAGTGATGACGTTCCTGTCATATTCTTAAAGCATAATGTTATTGATGAATATGATGAGCAATCAGAGGTTGCTGATCGACTTAGAATCAAGACAGTTCCTCTATTCCACTTCTACAAAAACGGGGTTCTGCTAGAAGCATTTCCAACCAGAGACAAAGAAAGAGTCACAGAGGCAATCTATAAGTATTCGTCAATGTCATCTCCTGCACCTCAAGAGAGTACAAACTAG MTIVGSTLGRCYNCCTYKSPIHLRNYYNEQLDFRTSSMLVLRPRNPAIFNGFVGVVSMINGSSVKQHSLKSVAYENQDDVLDEEDEEEGLCPVECVREFKTDEEFSRILEKAKKKNTLVVVDFYRTSCGSCKYIEKGFSKLCKASGSDDVPVIFLKHNVIDEYDEQSEVADRLRIKTVPLFHFYKNGVLLEAFPTRDKERVTEAIYKYSSMSSPAPQESTN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08404.1 vs. NCBI nr
Match: gi|902168125|gb|KNA07461.1| (hypothetical protein SOVF_171670 [Spinacia oleracea]) HSP 1 Score: 368.2 bits (944), Expect = 9.800e-99 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1
BLAST of Spo08404.1 vs. NCBI nr
Match: gi|731376604|ref|XP_010667621.1| (PREDICTED: thioredoxin-like 4, chloroplastic isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 315.1 bits (806), Expect = 9.900e-83 Identity = 154/208 (74.04%), Postives = 177/208 (85.10%), Query Frame = 1
BLAST of Spo08404.1 vs. NCBI nr
Match: gi|731376600|ref|XP_010667619.1| (PREDICTED: thioredoxin-like 4, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 301.6 bits (771), Expect = 1.100e-78 Identity = 146/188 (77.66%), Postives = 166/188 (88.30%), Query Frame = 1
BLAST of Spo08404.1 vs. NCBI nr
Match: gi|225458613|ref|XP_002284743.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Vitis vinifera]) HSP 1 Score: 232.6 bits (592), Expect = 6.400e-58 Identity = 112/153 (73.20%), Postives = 134/153 (87.58%), Query Frame = 1
BLAST of Spo08404.1 vs. NCBI nr
Match: gi|747073742|ref|XP_011083841.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Sesamum indicum]) HSP 1 Score: 232.6 bits (592), Expect = 6.400e-58 Identity = 120/200 (60.00%), Postives = 149/200 (74.50%), Query Frame = 1
BLAST of Spo08404.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLI6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_171670 PE=4 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 6.800e-99 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1
BLAST of Spo08404.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B2B2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_010610 PE=4 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 6.900e-83 Identity = 154/208 (74.04%), Postives = 177/208 (85.10%), Query Frame = 1
BLAST of Spo08404.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DWK8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_010610 PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 7.900e-79 Identity = 146/188 (77.66%), Postives = 166/188 (88.30%), Query Frame = 1
BLAST of Spo08404.1 vs. UniProtKB/TrEMBL
Match: E0CPV6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10510 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 4.500e-58 Identity = 112/153 (73.20%), Postives = 134/153 (87.58%), Query Frame = 1
BLAST of Spo08404.1 vs. UniProtKB/TrEMBL
Match: A0A059BK14_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00226 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 5.000e-57 Identity = 112/150 (74.67%), Postives = 128/150 (85.33%), Query Frame = 1
BLAST of Spo08404.1 vs. ExPASy Swiss-Prot
Match: TRL4_ARATH (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 3.300e-54 Identity = 103/158 (65.19%), Postives = 128/158 (81.01%), Query Frame = 1
BLAST of Spo08404.1 vs. ExPASy Swiss-Prot
Match: TRL4_ORYSJ (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0567100 PE=2 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.500e-51 Identity = 101/136 (74.26%), Postives = 112/136 (82.35%), Query Frame = 1
BLAST of Spo08404.1 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2) HSP 1 Score: 64.7 bits (156), Expect = 1.500e-9 Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 1
BLAST of Spo08404.1 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.100e-8 Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 1
BLAST of Spo08404.1 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3) HSP 1 Score: 60.5 bits (145), Expect = 2.700e-8 Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = 1
BLAST of Spo08404.1 vs. TAIR (Arabidopsis)
Match: AT1G07700.3 (Thioredoxin superfamily protein) HSP 1 Score: 213.0 bits (541), Expect = 1.900e-55 Identity = 103/158 (65.19%), Postives = 128/158 (81.01%), Query Frame = 1
BLAST of Spo08404.1 vs. TAIR (Arabidopsis)
Match: AT3G51030.1 (thioredoxin H-type 1) HSP 1 Score: 57.8 bits (138), Expect = 1.000e-8 Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 1
BLAST of Spo08404.1 vs. TAIR (Arabidopsis)
Match: AT4G26160.1 (atypical CYS HIS rich thioredoxin 1) HSP 1 Score: 57.0 bits (136), Expect = 1.700e-8 Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 1
BLAST of Spo08404.1 vs. TAIR (Arabidopsis)
Match: AT5G42980.1 (thioredoxin 3) HSP 1 Score: 55.1 bits (131), Expect = 6.500e-8 Identity = 33/115 (28.70%), Postives = 59/115 (51.30%), Query Frame = 1
BLAST of Spo08404.1 vs. TAIR (Arabidopsis)
Match: AT4G29670.2 (atypical CYS HIS rich thioredoxin 2) HSP 1 Score: 53.5 bits (127), Expect = 1.900e-7 Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08404.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08404.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08404.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08404.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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