Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTGTCCTCCCTCCTCTTATGTCTGCATCCATCGCTCGTCCTTTTCGTCTCCCCTCCTCCTCTGTTCCAGCGTAACTAATTGGTTAATGCTTTCAGATTCTTTTGCCCCTTCTCTCTACTTCCCCTTCACTAACTCTTTTATTCCAAATTCCACCCAAAAATCGATACAAAAGTAAAGCAGAACCCACCAATTAATTCCCCTCAACCCCTCCAATTTCCATTATTTTGATCGGAAAAAATGGATCTGTGGTCAGTTCATATCAAATACAATAACCCATCTCCCATTTTTGCTCGAAGTTCATTTCCAGAGAAACCCAGTTCGTTTAATTTTGTTAAGAATTCGCCATTTTCAGTTGAAGATGGTGGGCGTGTTTTTGAGTTTAGAATTTCAAAGCGCAAGTATTCTCTCTCTCATAACAGTTCCTTCATTGTTAAATCTATGGGGAAGAAGGATTCTGATAATTTTTCATCTTCTTCAGGTACCCTTTTAGCCTTTCTCTATTTTGGGTACTTTTGATTTTTGCATTTTATTTTGCTGTAATTGTTTATACTGTTGCTTTTTACTTTCTTGAATTCTGTGTGTTTTTTATGGGACTTTTTTGAAATTTAGACATTAGTTTAGTTACAGATTTTGTCATGAGTGGATGCTAACTAATTTAGTGGATTAAAGCATTTAGGATGGTACCCAAAACCTCAGCTCAAATCCCGCTTGGGATTGGAATAATTTTGTACACATTATGGTCTTGCATATTGGGATTGTGAAATTGAAACTGGTAGAAATGGGGTTGGGGGGAGGGGGGCATTAAGTAGCCTTGCCATATTAGGGGCTAAAAGTTGGAAATATCGGGTGGGATGTTCATGTTTCGGAAGTGATTATAATGTCTAGTTGAGTTTTACTGGCAAATGTGGAAACTGTGTAGTATTCATCTCAGAATTCTCCTACTATCACATGGTCATATCTCATTCACTTGGTAGTGAAGATGGTTTATCTTATAAGGTTTCATTTCAAGGTTAATTTGCCATATAGTCTCCGCACTTCAACGTATGACGCAGGCCTTGCTCGGCACTGTTGTGTGGCTGACGAGAGGACTGACTAG CTGTCCTCCCTCCTCTTATGTCTGCATCCATCGCTCGTCCTTTTCGTCTCCCCTCCTCCTCTGTTCCAGCGTAACTAATTGGTTAATGCTTTCAGATTCTTTTGCCCCTTCTCTCTACTTCCCCTTCACTAACTCTTTTATTCCAAATTCCACCCAAAAATCGATACAAAAGTAAAGCAGAACCCACCAATTAATTCCCCTCAACCCCTCCAATTTCCATTATTTTGATCGGAAAAAATGGATCTGTGGTCAGTTCATATCAAATACAATAACCCATCTCCCATTTTTGCTCGAAGTTCATTTCCAGAGAAACCCAGTTCGTTTAATTTTGTTAAGAATTCGCCATTTTCAGTTGAAGATGGTGGGCGTGTTTTTGAGTTTAGAATTTCAAAGCGCAAGTATTCTCTCTCTCATAACAGTTCCTTCATTGTTAAATCTATGGGGAAGAAGGATTCTGATAATTTTTCATCTTCTTCAGGCCTTGCTCGGCACTGTTGTGTGGCTGACGAGAGGACTGACTAG ATGGATCTGTGGTCAGTTCATATCAAATACAATAACCCATCTCCCATTTTTGCTCGAAGTTCATTTCCAGAGAAACCCAGTTCGTTTAATTTTGTTAAGAATTCGCCATTTTCAGTTGAAGATGGTGGGCGTGTTTTTGAGTTTAGAATTTCAAAGCGCAAGTATTCTCTCTCTCATAACAGTTCCTTCATTGTTAAATCTATGGGGAAGAAGGATTCTGATAATTTTTCATCTTCTTCAGGCCTTGCTCGGCACTGTTGTGTGGCTGACGAGAGGACTGACTAG MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHNSSFIVKSMGKKDSDNFSSSSGLARHCCVADERTD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|902228507|gb|KNA21133.1| (hypothetical protein SOVF_046170 [Spinacia oleracea]) HSP 1 Score: 166.0 bits (419), Expect = 3.100e-38 Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 1
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|731313910|ref|XP_010683164.1| (PREDICTED: uncharacterized protein LOC104897895 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 116.7 bits (291), Expect = 2.200e-23 Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 1
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|703112349|ref|XP_010100097.1| (hypothetical protein L484_014286 [Morus notabilis]) HSP 1 Score: 73.6 bits (179), Expect = 2.100e-10 Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|225460185|ref|XP_002279455.1| (PREDICTED: uncharacterized protein LOC100260279 [Vitis vinifera]) HSP 1 Score: 67.0 bits (162), Expect = 2.000e-8 Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 1
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|645224395|ref|XP_008219088.1| (PREDICTED: uncharacterized protein LOC103319339 [Prunus mume]) HSP 1 Score: 58.9 bits (141), Expect = 5.400e-6 Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNU6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046170 PE=4 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 2.200e-38 Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 1
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FUM9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g012550 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 1.500e-23 Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 1
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: W9RBS4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014286 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.500e-10 Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: A5ARB7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06810 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.400e-8 Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 1
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: M5XCW8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007604mg PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 3.800e-6 Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08407.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo08407.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo08407.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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