Spo08412 (gene)

Overview
NameSpo08412
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01585 : 47833 .. 48315 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTTGCCATCAAGTTCAGAGTCATATCTCACAGCAGGTGCTTCTTCTGACCAGTCACAACGCAGAACCAAAAAAAGAGAATCACTGTGAAGCAGCAATGCAGCTTGAGGGCGGGGTCAGCGCGCTTCTGGTATAACAACTTTTGCAGACTCACAAAATCACAAAGAGCTTATTTATAAGCCCTGTGAAGGTGGTTTCAGCTTACTTACTTTCCTGTAGATGGCGAAAACCGAAATTGTTGCTCATATCTGGTTCGCAATCTCTGCCAAAAATGGCTGCTTGCTCGGCTACCTGAACGGTTGAACAGGTACTGAGTACTAGAATTGGTGTCTGTGTGTTATATTAAAATATCGTAGGTTTAGTTTTGAAATTACTCAAACTGCATGTGGGTTTGTCCAAGTTTATTAAGTTTGTTTCAAATCTCACTATCGTAAATGACAGGTTGTATCAGAAGCCATTAAGATCTTTCTTAAAGTGA

mRNA sequence

ATGGATGGTTGCCATCAAGTTCAGAGTCATATCTCACAGCAGGTGCTTCTTCTGACCAGTCACAACGCAGAACCAAAAAAAGAGAATCACTGTGAAGCAGCAATGCAGCTTGAGGGCGGGGTCAGCGCGCTTCTGCTTACTTACTTTCCTGTAGATGGCGAAAACCGAAATTGTTGCTCATATCTGGTTCGCAATCTCTGCCAAAAATGGCTGCTTGCTCGGCTACCTGAACGGTTGAACAGGTTGTATCAGAAGCCATTAAGATCTTTCTTAAAGTGA

Coding sequence (CDS)

ATGGATGGTTGCCATCAAGTTCAGAGTCATATCTCACAGCAGGTGCTTCTTCTGACCAGTCACAACGCAGAACCAAAAAAAGAGAATCACTGTGAAGCAGCAATGCAGCTTGAGGGCGGGGTCAGCGCGCTTCTGCTTACTTACTTTCCTGTAGATGGCGAAAACCGAAATTGTTGCTCATATCTGGTTCGCAATCTCTGCCAAAAATGGCTGCTTGCTCGGCTACCTGAACGGTTGAACAGGTTGTATCAGAAGCCATTAAGATCTTTCTTAAAGTGA

Protein sequence

MDGCHQVQSHISQQVLLLTSHNAEPKKENHCEAAMQLEGGVSALLLTYFPVDGENRNCCSYLVRNLCQKWLLARLPERLNRLYQKPLRSFLK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08412.1Spo08412.1mRNA


Homology
BLAST of Spo08412.1 vs. NCBI nr
Match: gi|902204750|gb|KNA14963.1| (hypothetical protein SOVF_102550 [Spinacia oleracea])

HSP 1 Score: 119.4 bits (298), Expect = 3.300e-24
Identity = 67/116 (57.76%), Postives = 77/116 (66.38%), Query Frame = 1

		  

Query: 1   MDGCHQVQSHISQQVLLLTSHNAEPKKENHCEAAMQLEGGVSA----------------- 60
           M+ CHQVQSHISQQVLLLTSHNAEP  ENH EAA+QLEGG+S                  
Sbjct: 383 MNDCHQVQSHISQQVLLLTSHNAEPTTENHREAAIQLEGGISFWYNSFCRLTKSQRAYLE 442

Query: 61  -----LLLTYFPVDGENRNCCSYLVRNLCQKWLLA--RLPERLNRLYQKPLRSFLK 93
                + LT FPVDGEN+NCC  LVRNLCQKWLLA  RLPE   ++  + ++SFLK
Sbjct: 443 ALCRWIQLTDFPVDGENQNCCPSLVRNLCQKWLLALDRLPE---QVVSEAIKSFLK 495

BLAST of Spo08412.1 vs. NCBI nr
Match: gi|731351431|ref|XP_010687035.1| (PREDICTED: uncharacterized protein LOC104901183 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-12
Identity = 50/113 (44.25%), Postives = 64/113 (56.64%), Query Frame = 1

		  

Query: 4   CHQVQSHISQQVLLLTSHNAEPKKE-NHCEAAMQLEGGVSA------------------- 63
           CH+VQSHISQQV  LTSHN EP  + NH +AAMQLE G++                    
Sbjct: 403 CHEVQSHISQQVHHLTSHNTEPSTDQNHHDAAMQLESGINFWYDSFCRLTKSQRDYVQAI 462

Query: 64  ---LLLTYFPVDGENRNCCSYLVRNLCQKWLLA--RLPERLNRLYQKPLRSFL 92
              + L   P+D EN+N C  +VR LC+KWLLA  RLPE   ++  + + SFL
Sbjct: 463 CTWIRLLDCPIDNENQNRCPSMVRALCEKWLLALDRLPE---KVVSEAINSFL 512

BLAST of Spo08412.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R636_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_102550 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.300e-24
Identity = 67/116 (57.76%), Postives = 77/116 (66.38%), Query Frame = 1

		  

Query: 1   MDGCHQVQSHISQQVLLLTSHNAEPKKENHCEAAMQLEGGVSA----------------- 60
           M+ CHQVQSHISQQVLLLTSHNAEP  ENH EAA+QLEGG+S                  
Sbjct: 383 MNDCHQVQSHISQQVLLLTSHNAEPTTENHREAAIQLEGGISFWYNSFCRLTKSQRAYLE 442

Query: 61  -----LLLTYFPVDGENRNCCSYLVRNLCQKWLLA--RLPERLNRLYQKPLRSFLK 93
                + LT FPVDGEN+NCC  LVRNLCQKWLLA  RLPE   ++  + ++SFLK
Sbjct: 443 ALCRWIQLTDFPVDGENQNCCPSLVRNLCQKWLLALDRLPE---QVVSEAIKSFLK 495

BLAST of Spo08412.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BS00_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g187510 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.100e-13
Identity = 50/113 (44.25%), Postives = 64/113 (56.64%), Query Frame = 1

		  

Query: 4   CHQVQSHISQQVLLLTSHNAEPKKE-NHCEAAMQLEGGVSA------------------- 63
           CH+VQSHISQQV  LTSHN EP  + NH +AAMQLE G++                    
Sbjct: 403 CHEVQSHISQQVHHLTSHNTEPSTDQNHHDAAMQLESGINFWYDSFCRLTKSQRDYVQAI 462

Query: 64  ---LLLTYFPVDGENRNCCSYLVRNLCQKWLLA--RLPERLNRLYQKPLRSFL 92
              + L   P+D EN+N C  +VR LC+KWLLA  RLPE   ++  + + SFL
Sbjct: 463 CTWIRLLDCPIDNENQNRCPSMVRALCEKWLLALDRLPE---KVVSEAINSFL 512

BLAST of Spo08412.1 vs. UniProtKB/TrEMBL
Match: G5DWD7_SILLA (Putative uncharacterized protein (Fragment) OS=Silene latifolia PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.000e-7
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1

		  

Query: 4   CHQVQSHISQQVLLLTSH-NAEPKKENHCEAAMQLEGG------------------VSAL 63
           CHQVQSHI QQ+  L+SH + EP  E H EA +QLE                    V+AL
Sbjct: 144 CHQVQSHICQQIQHLSSHQSVEPTTEYHREATVQLESEVKFWFNSFCRLAKSQRDYVNAL 203

Query: 64  L----LTYFPVDGENRNCCSYLVRNLCQKWLLA--RLPERL 80
                LT   VD  +RN  S +VR+LCQ+WL+A  RLPE++
Sbjct: 204 FRWVQLTDCLVDDNSRNRHSSMVRDLCQRWLIALDRLPEKV 244

The following BLAST results are available for this feature:
BLAST of Spo08412.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902204750|gb|KNA14963.1|3.3e-2457.7hypothetical protein SOVF_1025... [more]
gi|731351431|ref|XP_010687035.1|1.3e-1244.2PREDICTED: uncharacterized pro... [more]
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BLAST of Spo08412.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9R636_SPIOL2.3e-2457.7Uncharacterized protein OS=Spi... [more]
A0A0J8BS00_BETVU9.1e-1344.2Uncharacterized protein OS=Bet... [more]
G5DWD7_SILLA2.0e-743.5Putative uncharacterized prote... [more]
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BLAST of Spo08412.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08412.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006867Domain of unknown function DUF632PFAMPF04782DUF632coord: 1..43
score: 9.

RNA-Seq Expression
   



Co-expression