Spo08499 (gene) | SpinachBase

Overview


Name	Spo08499
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Auxin-responsive protein
Location	Super_scaffold_89 : 1185685 .. 1186200 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACATACAAAAACAATTTGCAATCTAACGCTCACTAGATTTGCAAACTTTGATTAGTGATCATCAACCTTGTTTGCAAACTTTGATTAGTGATCATTAACCTTGTTTTTCCTTCTATAAATCATTAATCCATCGTCATCAATGGGACGGAGTAATGAAAACTCGAGTTATCTTAATGACACAGAGTTGAGATTAGGGTTACCTGGAACTAATGGATTTGAGAAGAAAAGATCATTTTCGGATATTAGTGAGGAATCTACTTCTGGTGTTGAAGATTGCCCTGACGACTACCTAATTCCACAACAATCAAAGTAAGTAGATCATATTAAGATTCAAATCGTGTTCTGTTCACTTGATTTTTACAAAATTAATTTCCTTATTAATTAGAATAATGAATTTGAATATGATACTAATTGATCTTCTTACTCATAATTTTTTAGGGTTCAAGCAATTGGATGGCCTCCAATTAGATCATACAGGAAAAATTTCCTTGAAGCGAAAAAATCACAAGATTAA

mRNA sequence

ATACATACAAAAACAATTTGCAATCTAACGCTCACTAGATTTGCAAACTTTGATTAGTGATCATCAACCTTGTTTGCAAACTTTGATTAGTGATCATTAACCTTGTTTTTCCTTCTATAAATCATTAATCCATCGTCATCAATGGGACGGAGTAATGAAAACTCGAGTTATCTTAATGACACAGAGTTGAGATTAGGGTTACCTGGAACTAATGGATTTGAGAAGAAAAGATCATTTTCGGATATTAGTGAGGAATCTACTTCTGGTGTTGAAGATTGCCCTGACGACTACCTAATTCCACAACAATCAAAGGTTCAAGCAATTGGATGGCCTCCAATTAGATCATACAGGAAAAATTTCCTTGAAGCGAAAAAATCACAAGATTAA

Coding sequence (CDS)

ATGGGACGGAGTAATGAAAACTCGAGTTATCTTAATGACACAGAGTTGAGATTAGGGTTACCTGGAACTAATGGATTTGAGAAGAAAAGATCATTTTCGGATATTAGTGAGGAATCTACTTCTGGTGTTGAAGATTGCCCTGACGACTACCTAATTCCACAACAATCAAAGGTTCAAGCAATTGGATGGCCTCCAATTAGATCATACAGGAAAAATTTCCTTGAAGCGAAAAAATCACAAGATTAA

Protein sequence

MGRSNENSSYLNDTELRLGLPGTNGFEKKRSFSDISEESTSGVEDCPDDYLIPQQSKVQAIGWPPIRSYRKNFLEAKKSQD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo08499.1	Spo08499.1	mRNA

Homology

[Close]

BLAST of Spo08499.1 vs. NCBI nr
Match: gi|902048446|gb|KNA02843.1| (hypothetical protein SOVF_214830, partial [Spinacia oleracea])

HSP 1 Score: 161.8 bits (408), Expect = 5.100e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 1


		  
Query: 1  MGRSNENSSYLNDTELRLGLPGTNGFEKKRSFSDISEESTSGVEDCPDDYLIPQQSKVQA 60
          MGRSNENSSYLNDTELRLGLPGTNG EKKRSFSDISEESTSGVEDC DDYLIPQQSKVQA
Sbjct: 1  MGRSNENSSYLNDTELRLGLPGTNGSEKKRSFSDISEESTSGVEDCHDDYLIPQQSKVQA 60

Query: 61 IGWPPIRSYRKNFLEAKKSQD 82
          IGWPPIRSYRKNFLEAKKSQD
Sbjct: 61 IGWPPIRSYRKNFLEAKKSQD 81

[Close]

BLAST of Spo08499.1 vs. NCBI nr
Match: gi|731328084|ref|XP_010674856.1| (PREDICTED: auxin-responsive protein IAA4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 72.0 bits (175), Expect = 5.300e-10
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1


		  
Query: 5  NENSSYLNDTELRLGLPGTNGFEK--KRSFSDISEESTSGVEDCPDDYLIPQQSKVQAIG 64
          N+    L DTELRLGLPGT    +  KRSFSDI+EESTS  +    +   P   K Q +G
Sbjct: 4  NKKEIELQDTELRLGLPGTEFKTQVNKRSFSDINEESTSNDDKSGKNTAPPP--KAQVVG 63

Query: 65 WPPIRSYRKNFLEAKKSQ 81
          WPP+RSYRKN L+A K +
Sbjct: 64 WPPVRSYRKNCLQAIKKE 79

[Close]

BLAST of Spo08499.1 vs. NCBI nr
Match: gi|659100794|ref|XP_008451269.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 7.000e-10
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 1


		  
Query: 14 TELRLGLPG-------TNGFEKKRSFSDISEESTSGVED---CPDDYLIPQQSKVQAIGW 73
          TELRLGLPG       T     KR FS+I +ES S + +   C D    P  SK Q +GW
Sbjct: 18 TELRLGLPGSDEPDRRTESKSNKRPFSEIDKESNSSISNNGNCLDQTSQPPPSKAQVVGW 77

Query: 74 PPIRSYRKNFLEAKKSQ 81
          PP+RSYRKN+L  KKS+
Sbjct: 78 PPVRSYRKNYLAGKKSE 94

[Close]

BLAST of Spo08499.1 vs. NCBI nr
Match: gi|902218311|gb|KNA17991.1| (hypothetical protein SOVF_074790 [Spinacia oleracea])

HSP 1 Score: 70.9 bits (172), Expect = 1.200e-9
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 1


		  
Query: 13 DTELRLGLPGTN--GFEKKRSFSDISEESTSGVEDCPDDYLIPQQSKVQAIGWPPIRSYR 72
          DTELRLGLPGT       KRSFS+I EEST+   D  +D   P   K Q IGWPP+RSYR
Sbjct: 12 DTELRLGLPGTEFKTMVNKRSFSEIKEESTTCNVDKSEDNT-PPPPKAQVIGWPPVRSYR 71

Query: 73 KNFLEAKKSQ 81
          KN L A K +
Sbjct: 72 KNCLHALKKE 80

[Close]

BLAST of Spo08499.1 vs. NCBI nr
Match: gi|449458448|ref|XP_004146959.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-8
Identity = 38/77 (49.35%), Postives = 44/77 (57.14%), Query Frame = 1


		  
Query: 14 TELRLGLPG-------TNGFEKKRSFSDISEESTSGVEDCP---DDYLIPQQSKVQAIGW 73
          TELRLGLPG       T     KR FS+I +E+ S V D     D    P  SK Q +GW
Sbjct: 18 TELRLGLPGSDDTNRRTESKSNKRPFSEIDKENNSSVSDVGNHIDQTSQPPPSKAQVVGW 77

Query: 74 PPIRSYRKNFLEAKKSQ 81
          PP+RSYRKN L  KKS+
Sbjct: 78 PPVRSYRKNCLAVKKSE 94

[Close]

BLAST of Spo08499.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q806_SPIOL (Auxin-responsive protein (Fragment) OS=Spinacia oleracea GN=SOVF_214830 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.600e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 1


		  
Query: 1  MGRSNENSSYLNDTELRLGLPGTNGFEKKRSFSDISEESTSGVEDCPDDYLIPQQSKVQA 60
          MGRSNENSSYLNDTELRLGLPGTNG EKKRSFSDISEESTSGVEDC DDYLIPQQSKVQA
Sbjct: 1  MGRSNENSSYLNDTELRLGLPGTNGSEKKRSFSDISEESTSGVEDCHDDYLIPQQSKVQA 60

Query: 61 IGWPPIRSYRKNFLEAKKSQD 82
          IGWPPIRSYRKNFLEAKKSQD
Sbjct: 61 IGWPPIRSYRKNFLEAKKSQD 81

[Close]

BLAST of Spo08499.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FCS6_BETVU (Auxin-responsive protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g082270 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-10
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1


		  
Query: 5  NENSSYLNDTELRLGLPGTNGFEK--KRSFSDISEESTSGVEDCPDDYLIPQQSKVQAIG 64
          N+    L DTELRLGLPGT    +  KRSFSDI+EESTS  +    +   P   K Q +G
Sbjct: 4  NKKEIELQDTELRLGLPGTEFKTQVNKRSFSDINEESTSNDDKSGKNTAPPP--KAQVVG 63

Query: 65 WPPIRSYRKNFLEAKKSQ 81
          WPP+RSYRKN L+A K +
Sbjct: 64 WPPVRSYRKNCLQAIKKE 79

[Close]

BLAST of Spo08499.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RER8_SPIOL (Auxin-responsive protein OS=Spinacia oleracea GN=SOVF_074790 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.300e-10
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 1


		  
Query: 13 DTELRLGLPGTN--GFEKKRSFSDISEESTSGVEDCPDDYLIPQQSKVQAIGWPPIRSYR 72
          DTELRLGLPGT       KRSFS+I EEST+   D  +D   P   K Q IGWPP+RSYR
Sbjct: 12 DTELRLGLPGTEFKTMVNKRSFSEIKEESTTCNVDKSEDNT-PPPPKAQVIGWPPVRSYR 71

Query: 73 KNFLEAKKSQ 81
          KN L A K +
Sbjct: 72 KNCLHALKKE 80

[Close]

BLAST of Spo08499.1 vs. UniProtKB/TrEMBL
Match: A0A0A0K770_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_7G378530 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.200e-9
Identity = 38/77 (49.35%), Postives = 44/77 (57.14%), Query Frame = 1


		  
Query: 14 TELRLGLPG-------TNGFEKKRSFSDISEESTSGVEDCP---DDYLIPQQSKVQAIGW 73
          TELRLGLPG       T     KR FS+I +E+ S V D     D    P  SK Q +GW
Sbjct: 18 TELRLGLPGSDDTNRRTESKSNKRPFSEIDKENNSSVSDVGNHIDQTSQPPPSKAQVVGW 77

Query: 74 PPIRSYRKNFLEAKKSQ 81
          PP+RSYRKN L  KKS+
Sbjct: 78 PPVRSYRKNCLAVKKSE 94

[Close]

BLAST of Spo08499.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QH01_GOSRA (Auxin-responsive protein OS=Gossypium raimondii GN=B456_001G242800 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.000e-8
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 1


		  
Query: 6  ENSSYLNDTELRLGLPGTNGFEK-------KRSFSDI-SEESTSGVEDCPDDYLIPQQSK 65
          EN   L  TELRLGLPG++  E+       KR+ SDI SE S S  E+   D   P  +K
Sbjct: 2  ENDLNLKATELRLGLPGSDEPERQMTPRPNKRTLSDIVSEGSRSTTEEDHQDNAPP--AK 61

Query: 66 VQAIGWPPIRSYRKNFLEAKKSQ 81
          VQ +GWPP+RSYRKN L+ KK +
Sbjct: 62 VQIVGWPPVRSYRKNCLQGKKDE 82

[Close]

BLAST of Spo08499.1 vs. ExPASy Swiss-Prot
Match: AX22D_VIGRR (Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.500e-9
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 1


		  
Query: 4  SNENSSYLNDTELRLGLPGTNGFEK-------KRSFSDISEEST--SGVEDCPDDYLIPQ 63
          S E    L  TELRLGLPG++  EK       KRS  + S+E +  +G +   +D ++P 
Sbjct: 7  SYEKELNLKATELRLGLPGSDEPEKRATARSNKRSSPEASDEESISNGSDVTKEDNVVPP 66

Query: 64 QSKVQAIGWPPIRSYRKNFLEAKKSQD 82
           +K Q +GWPPIRSYRKN ++ KK ++
Sbjct: 67 -AKAQVVGWPPIRSYRKNNVQQKKEEE 92

[Close]

BLAST of Spo08499.1 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 5.500e-7
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 1


		  
Query: 11 LNDTELRLGLPGTN-----GFEKKRSFSDISE---ESTSGVEDCPDDYLIPQQSKVQAIG 70
          L  TELRLGLPGT      G   KR   + +E   EST   E            K Q +G
Sbjct: 13 LKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKTETA-------SPPKAQIVG 72

Query: 71 WPPIRSYRKNFLEAKKSQ 81
          WPP+RSYRKN ++ KKS+
Sbjct: 73 WPPVRSYRKNNVQTKKSE 83

[Close]

BLAST of Spo08499.1 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.600e-6
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1


		  
Query: 11 LNDTELRLGLPGT-NGFEKKRSFSD--------ISEESTSGVEDCPDDYLIPQQSKVQAI 70
          L +TELRLGLPGT N  E K   S         +S ++   +E            K Q +
Sbjct: 7  LKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQIV 66

Query: 71 GWPPIRSYRKNFLEAKKSQ 81
          GWPP+RSYRKN +++KK++
Sbjct: 67 GWPPVRSYRKNNIQSKKNE 85

[Close]

BLAST of Spo08499.1 vs. ExPASy Swiss-Prot
Match: AX22C_VIGRR (Auxin-induced protein 22C OS=Vigna radiata var. radiata GN=AUX22C PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.100e-6
Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 1


		  
Query: 11 LNDTELRLGLPGTNGFE---------KKRSFSDISEESTSGVEDCPDDYLIPQQSKVQAI 70
          L  TELRLGLPG  G           KKR FSDI  E++S  ED        +++K Q +
Sbjct: 8  LEITELRLGLPGAGGENNTDKDKNKNKKRVFSDIEGENSSSEEDGK------KETKNQVV 67

Query: 71 GWPPIRSYRK 72
          GWPP+ SYRK
Sbjct: 68 GWPPVCSYRK 71

[Close]

BLAST of Spo08499.1 vs. ExPASy Swiss-Prot
Match: AX22E_VIGRR (Auxin-induced protein 22E OS=Vigna radiata var. radiata GN=AUX22E PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.700e-6
Identity = 34/97 (35.05%), Postives = 46/97 (47.42%), Query Frame = 1


		  
Query: 4  SNENSSYLNDTELRLGLPGTNG----------------------FEKKRSFSDISEESTS 63
          S E    L  TELRLGLPG++                        E+ R  S+I+ +S+ 
Sbjct: 3  SYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSD 62

Query: 64 GVEDCPDDYLIPQQSKVQAIGWPPIRSYRKNFLEAKK 79
                 +    Q +KVQ +GWPPIRS+RKN L+ KK
Sbjct: 63 STTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKK 99

[Close]

BLAST of Spo08499.1 vs. TAIR (Arabidopsis)
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.100e-8
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 1


		  
Query: 11 LNDTELRLGLPGTN-----GFEKKRSFSDISE---ESTSGVEDCPDDYLIPQQSKVQAIG 70
          L  TELRLGLPGT      G   KR   + +E   EST   E            K Q +G
Sbjct: 13 LKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKTETA-------SPPKAQIVG 72

Query: 71 WPPIRSYRKNFLEAKKSQ 81
          WPP+RSYRKN ++ KKS+
Sbjct: 73 WPPVRSYRKNNVQTKKSE 83

[Close]

BLAST of Spo08499.1 vs. TAIR (Arabidopsis)
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 53.1 bits (126), Expect = 9.000e-8
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1


		  
Query: 11 LNDTELRLGLPGT-NGFEKKRSFSD--------ISEESTSGVEDCPDDYLIPQQSKVQAI 70
          L +TELRLGLPGT N  E K   S         +S ++   +E            K Q +
Sbjct: 7  LKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQIV 66

Query: 71 GWPPIRSYRKNFLEAKKSQ 81
          GWPP+RSYRKN +++KK++
Sbjct: 67 GWPPVRSYRKNNIQSKKNE 85

[Close]

BLAST of Spo08499.1 vs. TAIR (Arabidopsis)
Match: AT3G04730.1 (indoleacetic acid-induced protein 16)

HSP 1 Score: 47.8 bits (112), Expect = 3.800e-6
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1


		  
Query: 14 TELRLGLPGTN-------------GFEK----KRSFSDISEESTSGVE-DCPDDYLIPQQ 73
          TELRLGLPG N             GF +    K + S  + +S S V+ +   + ++   
Sbjct: 7  TELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEKVVKPP 66

Query: 74 SKVQAIGWPPIRSYRKNFLEAKK 79
          +K Q +GWPP+RS+RKN +  +K
Sbjct: 67 AKAQVVGWPPVRSFRKNVMSGQK 89

[Close]

BLAST of Spo08499.1 vs. TAIR (Arabidopsis)
Match: AT1G52830.1 (indole-3-acetic acid 6)

HSP 1 Score: 47.0 bits (110), Expect = 6.500e-6
Identity = 36/86 (41.86%), Postives = 44/86 (51.16%), Query Frame = 1


		  
Query: 11 LNDTELRLGLPGTNGFE---------KKRSFSD------ISEESTSGVEDCPDDYLIPQQ 70
          L  TELRLGLPG N  E         KKR  SD      +  E+ + V    +D  +P  
Sbjct: 8  LEITELRLGLPGDNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVEDESLPVV 67

Query: 71 SKVQAIGWPPIRSYR--KNFLEAKKS 80
           K QA+GWPP+ SYR  KN  EA K+
Sbjct: 68 -KSQAVGWPPVCSYRRKKNNEEASKA 92

The following BLAST results are available for this feature:

BLAST of Spo08499.1 vs. NCBI nr
BLAST of Spo08499.1 vs. UniProtKB/TrEMBL
BLAST of Spo08499.1 vs. ExPASy Swiss-Prot
BLAST of Spo08499.1 vs. TAIR (Arabidopsis)

BLAST of Spo08499.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902048446\|gb\|KNA02843.1\|	5.1e-37	97.5	hypothetical protein SOVF_2148...	[more]
gi\|731328084\|ref\|XP_010674856.1\|	5.3e-10	52.5	PREDICTED: auxin-responsive pr...	[more]
gi\|659100794\|ref\|XP_008451269.1\|	7.0e-10	49.3	PREDICTED: auxin-induced prote...	[more]
gi\|902218311\|gb\|KNA17991.1\|	1.2e-9	57.1	hypothetical protein SOVF_0747...	[more]
gi\|449458448\|ref\|XP_004146959.1\|	1.3e-8	49.3	PREDICTED: auxin-induced prote...	[more]

BLAST of Spo08499.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9Q806_SPIOL	3.6e-37	97.5	Auxin-responsive protein (Frag...	[more]
A0A0J8FCS6_BETVU	3.7e-10	52.5	Auxin-responsive protein OS=Be...	[more]
A0A0K9RER8_SPIOL	8.3e-10	57.1	Auxin-responsive protein OS=Sp...	[more]
A0A0A0K770_CUCSA	9.2e-9	49.3	Auxin-responsive protein OS=Cu...	[more]
A0A0D2QH01_GOSRA	2.0e-8	49.4	Auxin-responsive protein OS=Go...	[more]

BLAST of Spo08499.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
AX22D_VIGRR	3.5e-9	42.5	Auxin-induced protein 22D OS=V...	[more]
IAA4_ARATH	5.5e-7	43.5	Auxin-responsive protein IAA4 ...	[more]
IAA3_ARATH	1.6e-6	39.2	Auxin-responsive protein IAA3 ...	[more]
AX22C_VIGRR	2.1e-6	45.7	Auxin-induced protein 22C OS=V...	[more]
AX22E_VIGRR	2.7e-6	35.0	Auxin-induced protein 22E OS=V...	[more]

BLAST of Spo08499.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT5G43700.1	3.1e-8	43.5	AUX/IAA transcriptional regula...	[more]
AT1G04240.1	9.0e-8	39.2	AUX/IAA transcriptional regula...	[more]
AT3G04730.1	3.8e-6	34.9	indoleacetic acid-induced prot...	[more]
AT1G52830.1	6.5e-6	41.8	indole-3-acetic acid 6	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 4..81 score: 4.1
None	No IPR available	PANTHER	PTHR31734:SF11	AUXIN-RESPONSIVE PROTEIN IAA1-RELATED	coord: 4..81 score: 4.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009987	cellular process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08496	0.75	Barchart \| Table
Spo02371	0.68	Barchart \| Table