Spo08545 (gene) | SpinachBase

Overview


Name	Spo08545
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	Super_scaffold_51 : 175363 .. 178515 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTAGGCTGCTGGAGACTTTTATTTGCACGACCATATCAAAGTAAATTTCTTTAACCGCGAATCGTCGTAGAAAACACGATAAACCAAGAAGAGAAGGGAGAGAAACTTGGAACCCCAGTTGCAGACTTGTGAGTTACTACGTACGAAGCAGAGACTTACAAACTTTAAGAGGAGAAAGAATGATGCGAGGAACTGGATCCGCCGGGTCGAAGCGGCAACAACCGTCGTGGACCACCACCATTTACCTACGCTTTCGTGCTGCCGAATTCGAGATTCTTTTCTTCCTCTTCTTTCTCGTTGCTTTTCTCTTCCTCAAAGATCTCGTAAGCAAACAACCTCCTCCACTTCCCCTCTTTTATTTTATTTAATCTTTTCTTAGATTATTATTTGTTTTCAGTTGCTAATTGTTGATTCTATGTTCAATTTCTGTTCGCTGATTATGAATTCTGATTGATTTTGTTTGACCTGTAATATCGTGGGGGAATTGCTGTAGGACTTTAGAATTGTCTACAGATGAACTAAAAATTGGGGATAATTTTGTGTTTTTCGTGTCGGAATTGCGGATTGATTTTTCATTATTGATAGAAAAAACCATTTTAACACTTCCTAATTTTGATTGATTTACTCCTGAATTAGAAAATTGGCAGTTCGCTCTCATTTATCTTAATGTTGAATTACCCCTGATTGCTCTTGAAATTGTGAATTCATCCATGAAAGTTGAATCACCACCTATTGCTCTTGGAATTGTGAATTTGGCAATGAATGTTGAAATACCACTGCGTGCTTATGAAACAGTGAATTCGGAAGTGTTTGTTTAGATTACAATTGATTGCTTGTGTGATTATGATTTGTGTATGCATCGGTGACTGTTGAATTACCATCGCTTGCTTGTGAGATCATGAATTTAGCAACGGATGTTGATCTACTACCTCCTTTATCACTGAGCGGTCATTTATTGTGATTTCATCAGTTGATCCCTAGTTAAATCATGAATTCATCAGTGTATGTTTGAAACCCGGATTGCTCATCAGTGGATGGGTGATTGGATTATGTTACGTATGCCAATAATCTCTCTTTGAGGAAAGGCTGTTGAAATGCTTAGCTCAGGTCTAAACATATTGCGCAAACAGGTTTTACAGGATCAATTAAAGGAGTCCGAGTAACACAATCTCTTAGGTAAGTAATAATTGGGTTTAGTTGATATTATCTTTGGAAAAGCATCTACTGTAATACAGCATTAGTAGCACGGGGGGTCAGTGAAATAATGGAAAATCGTTAATTGTGAGGATCGGGACGATGTGACTATTAGTTCCGACAGAGGAGTTAGCTGCTTGACAAAACTGATGTTTAAGAAAGAGCTGCAATAGAATATAGATTCTTTACTTGTTTCTTTAAGTACTCTAAGCATTATTGTAAAAAAATCTGTAACAATGCTTCTATGTCCTTCATTGAGTAAAGTATTCTCCTTTGACCAGTTTTCAGATGAAATGTACTACATTCAAGTGACTTTTTGATCTATGCAGACAGTAAGTAAAGTTTAAAAAAAAATATTGATGTTACCTTATTTAGATTATTACTTTAAAAAAAACCTTTTTGGATGACCTTGCTGTACTGGAAGGAACCCATCATCCTTCATTTTCTGAACTAGTTTGCAGATGAAATATACCACAGTCAAGTGGCTTCTTGACTTATGCAGACAGTAAGTCAAGCGAAATGTTAATGATGTCATTTTAGTGACTTTTTGACCTAGCATCCACCATCCTTAAATATTTATCATGCATTCATGCATTACCAACTTAGCTTGTAAAAATGGGTTTTTTTTGTTGGGAGTGGGGTACCAAATTTCCATGTTATAAGTGGGATAGCAATGAATGAACATGCCATTGATTTCTGTACTAGTCACGAGCCTCACAAACAGCTATAAATGCCTTGGAATTGACAGACTGATCAATTTCTATTTTCTAGCTAGTGGTTTGTGTTACTTTACTGGACTGACCGACCTACTTTGTTCCTCGATAATGAATGTTGTATAACAGAAATTCTTAAATGTTAGATTTTTGTGCAAGCTAAAACCAGACATAAGGAAATAGCATATGTGGTTCCGTCCTTGTTTACATCCTCAAAGTCGTTTGTGTTATAGTTTTCTTTTCTTGTAATTGAGCTGCCTGAGCTGGTTTGTGCTTCTTGAATGATTAGATATCAGCATGCATCTGTATGTTTTCCTCCAGGATAATGTGTATTGGCGTTCATGGTGATTTGGTTATCATACATGATACATGTGAATCGCCCTCAGTTGTCATGGGAATCATTGTTTAACATTTGATATTTTACTAGGGAGGCCATCTGATGGGTAAAACGAAGTCATACTTGGTATTAAGTTAGAACTTAGAAGTACTTGTATTACTCTAGGCTGAAACCTCCATCTTCAAATAAATTACACTTGACTTTTGGGAGACACTCCTGTTTGAGTTTTGACCATAAACTTGTCAAAATACCACGCTGATACCTTCAAGGGTGTTATGTAAGCTTGCCAATTGTTAGCTTTTATTATGATATAATGACAAGACATTAATTATCAACGTTGGACCACAAATGTTAAATGTTATCTAGTACGAGTATTCATGAACTGGTATATTGTTGTTAACCAAGGAGGGGCTTTTCTGAAGGAGGTTTATTATCGAAGTTGGTGTTTTTGGTCATCACCTTAATAATTTGATAGATTATGGACTTTATGGTAGATGCTCGGTGACATTGGTGTTTCGCAAGTTTATTATCGGTGTTTATATGTCTTATGGTGTTTTTTGTCTATTGCAGATATCAAGACCCGAGTATAATCAGATTCTGGTGAAGAAGCCTCAACATGACTTCTGGCCGTTTTAGGAGATAACTGACTATGATGTCGTAAATTTTGTTTGATATTTTTTCATTTTGTACAATACTTTCATCTTAATTGAAGCTGATCAAGAATGTAAATCTATGTATGGAAAGAGACTTTCTGAGGATGATTGTCTGATATAGAGTATCTTGTTTGCTGTCCGAATTGTCCGATGATAACAATCATCTTAATTTTCTAATTTTTAATTAGACCTGCTTAACTAGTTATGTTATTTGGGCCAAAATGAAGATATGTTGGTTACTTCTGAACCCAAAC

mRNA sequence

TACTAGGCTGCTGGAGACTTTTATTTGCACGACCATATCAAAGTAAATTTCTTTAACCGCGAATCGTCGTAGAAAACACGATAAACCAAGAAGAGAAGGGAGAGAAACTTGGAACCCCAGTTGCAGACTTGTGAGTTACTACGTACGAAGCAGAGACTTACAAACTTTAAGAGGAGAAAGAATGATGCGAGGAACTGGATCCGCCGGGTCGAAGCGGCAACAACCGTCGTGGACCACCACCATTTACCTACGCTTTCGTGCTGCCGAATTCGAGATTCTTTTCTTCCTCTTCTTTCTCGTTGCTTTTCTCTTCCTCAAAGATCTCATATCAAGACCCGAGTATAATCAGATTCTGGTGAAGAAGCCTCAACATGACTTCTGGCCGTTTTAGGAGATAACTGACTATGATGTCGTAAATTTTGTTTGATATTTTTTCATTTTGTACAATACTTTCATCTTAATTGAAGCTGATCAAGAATGTAAATCTATGTATGGAAAGAGACTTTCTGAGGATGATTGTCTGATATAGAGTATCTTGTTTGCTGTCCGAATTGTCCGATGATAACAATCATCTTAATTTTCTAATTTTTAATTAGACCTGCTTAACTAGTTATGTTATTTGGGCCAAAATGAAGATATGTTGGTTACTTCTGAACCCAAAC

Coding sequence (CDS)

ATGATGCGAGGAACTGGATCCGCCGGGTCGAAGCGGCAACAACCGTCGTGGACCACCACCATTTACCTACGCTTTCGTGCTGCCGAATTCGAGATTCTTTTCTTCCTCTTCTTTCTCGTTGCTTTTCTCTTCCTCAAAGATCTCATATCAAGACCCGAGTATAATCAGATTCTGGTGAAGAAGCCTCAACATGACTTCTGGCCGTTTTAG

Protein sequence

MMRGTGSAGSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVKKPQHDFWPF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo08545.1	Spo08545.1	mRNA

Homology

[Close]

BLAST of Spo08545.1 vs. NCBI nr
Match: gi|902173371|gb|KNA08256.1| (hypothetical protein SOVF_164120 [Spinacia oleracea])

HSP 1 Score: 141.7 bits (356), Expect = 4.700e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1

		  
Query: 1  MMRGTGSAGSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVK 60
          MMRGTGSAGSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVK
Sbjct: 1  MMRGTGSAGSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVK 60

Query: 61 KPQHDFWPF 70
          KPQHDFWPF
Sbjct: 61 KPQHDFWPF 69

[Close]

BLAST of Spo08545.1 vs. NCBI nr
Match: gi|870862116|gb|KMT13351.1| (hypothetical protein BVRB_4g084420 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.8 bits (229), Expect = 2.500e-16
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1

		  
Query: 9  GSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVKKPQHDF 67
          GSKRQQPS  TTIYL  RAAEFEI FFLFF +AF F ++L +RPEYNQILVKKPQHDF
Sbjct: 5  GSKRQQPSLVTTIYLYLRAAEFEIFFFLFFFIAFFFFRNLTARPEYNQILVKKPQHDF 62

[Close]

BLAST of Spo08545.1 vs. NCBI nr
Match: gi|703116123|ref|XP_010101060.1| (hypothetical protein L484_007794 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 7.700e-10
Identity = 42/75 (56.00%), Postives = 48/75 (64.00%), Query Frame = 1

		  
Query: 2  MRGTGSAGSK----RQQPSWTTTIYLRFR---AAEFEILFFLFFLVAFLFLKDLISRPEY 61
          M G G A S+    R + + T  +   FR    AEFEILF LFFL+AFL  KDL SRPEY
Sbjct: 1  MAGAGRAESRNRRERDESAVTRAVNSVFRFVRLAEFEILFVLFFLIAFLIFKDLTSRPEY 60

Query: 62 NQILVKKPQHDFWPF 70
          NQILVKKP   FWP+
Sbjct: 61 NQILVKKPGASFWPY 75

[Close]

BLAST of Spo08545.1 vs. NCBI nr
Match: gi|720093141|ref|XP_010245964.1| (PREDICTED: uncharacterized protein LOC104589364 [Nelumbo nucifera])

HSP 1 Score: 70.1 bits (170), Expect = 1.700e-9
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 1

		  
Query: 2  MRGTGSAGSKRQQPSWTTTIYLRF---RAAEFEILFFLFFLVAFLFLKDLISRPEYNQIL 61
          MRG   A   R + ++T  +   F   R AEFEILFFLF ++ F+  KDL SRPEYNQIL
Sbjct: 1  MRGRIDARPNRNESAFTRAVNAVFAFVRLAEFEILFFLFLVITFIVFKDLTSRPEYNQIL 60

Query: 62 VKKP-QHDFWPF 70
          VKKP  +DFWP+
Sbjct: 61 VKKPGGNDFWPY 72

[Close]

BLAST of Spo08545.1 vs. NCBI nr
Match: gi|590590407|ref|XP_007016725.1| (GRIP and coiled-coil domain-containing protein 1 [Theobroma cacao])

HSP 1 Score: 70.1 bits (170), Expect = 1.700e-9
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1

		  
Query: 17 WTTT-----IYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVKKPQH-DFWPF 70
          WT T     ++  FR AEFEILFFLFF++AFL  KDL SRPEYNQ+LVKKP   D WP+
Sbjct: 18 WTLTAAVNSVFEFFRLAEFEILFFLFFIIAFLIFKDLTSRPEYNQLLVKKPGGVDLWPY 76

[Close]

BLAST of Spo08545.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNV2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_164120 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.300e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1

		  
Query: 1  MMRGTGSAGSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVK 60
          MMRGTGSAGSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVK
Sbjct: 1  MMRGTGSAGSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVK 60

Query: 61 KPQHDFWPF 70
          KPQHDFWPF
Sbjct: 61 KPQHDFWPF 69

[Close]

BLAST of Spo08545.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FBY6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g084420 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.700e-16
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1

		  
Query: 9  GSKRQQPSWTTTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVKKPQHDF 67
          GSKRQQPS  TTIYL  RAAEFEI FFLFF +AF F ++L +RPEYNQILVKKPQHDF
Sbjct: 5  GSKRQQPSLVTTIYLYLRAAEFEIFFFLFFFIAFFFFRNLTARPEYNQILVKKPQHDF 62

[Close]

BLAST of Spo08545.1 vs. UniProtKB/TrEMBL
Match: W9S3E9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007794 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.400e-10
Identity = 42/75 (56.00%), Postives = 48/75 (64.00%), Query Frame = 1

		  
Query: 2  MRGTGSAGSK----RQQPSWTTTIYLRFR---AAEFEILFFLFFLVAFLFLKDLISRPEY 61
          M G G A S+    R + + T  +   FR    AEFEILF LFFL+AFL  KDL SRPEY
Sbjct: 1  MAGAGRAESRNRRERDESAVTRAVNSVFRFVRLAEFEILFVLFFLIAFLIFKDLTSRPEY 60

Query: 62 NQILVKKPQHDFWPF 70
          NQILVKKP   FWP+
Sbjct: 61 NQILVKKPGASFWPY 75

[Close]

BLAST of Spo08545.1 vs. UniProtKB/TrEMBL
Match: A0A061H085_THECC (GRIP and coiled-coil domain-containing protein 1 OS=Theobroma cacao GN=TCM_042045 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-9
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1

		  
Query: 17 WTTT-----IYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVKKPQH-DFWPF 70
          WT T     ++  FR AEFEILFFLFF++AFL  KDL SRPEYNQ+LVKKP   D WP+
Sbjct: 18 WTLTAAVNSVFEFFRLAEFEILFFLFFIIAFLIFKDLTSRPEYNQLLVKKPGGVDLWPY 76

[Close]

BLAST of Spo08545.1 vs. UniProtKB/TrEMBL
Match: A0A059AKQ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00239 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.100e-9
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1

		  
Query: 13  QQPSWT---TTIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVKKPQH-DFWP 70
           ++P +T   T+++   R AEFEILFFLFF +AFL  KDL SRPEYNQILVKKP   D WP
Sbjct: 70  KEPMFTRMVTSVFRFARVAEFEILFFLFFFIAFLIFKDLTSRPEYNQILVKKPGGIDLWP 129

[Close]

BLAST of Spo08545.1 vs. TAIR (Arabidopsis)
Match: AT3G14430.1 (unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 5.700e-11
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1

		  
Query: 4  GTGSAGSKRQQPSWTT---TIYLRFRAAEFEILFFLFFLVAFLFLKDLISRPEYNQILVK 63
          GT   G +R     T    +++  FR AEFEILF LF L+ ++  KDL SRPEYN+ILV+
Sbjct: 7  GTNRVGMRRDDSLLTRFVDSVFYFFRLAEFEILFVLFMLITYVIFKDLTSRPEYNRILVE 66

Query: 64 KP-QHDFWPF 70
          KP   D WPF
Sbjct: 67 KPGGSDIWPF 76

The following BLAST results are available for this feature:

BLAST of Spo08545.1 vs. NCBI nr
BLAST of Spo08545.1 vs. UniProtKB/TrEMBL
BLAST of Spo08545.1 vs. ExPASy Swiss-Prot
BLAST of Spo08545.1 vs. TAIR (Arabidopsis)

BLAST of Spo08545.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902173371\|gb\|KNA08256.1\|	4.7e-31	100.	hypothetical protein SOVF_1641...	[more]
gi\|870862116\|gb\|KMT13351.1\|	2.5e-16	77.5	hypothetical protein BVRB_4g08...	[more]
gi\|703116123\|ref\|XP_010101060.1\|	7.7e-10	56.0	hypothetical protein L484_0077...	[more]
gi\|720093141\|ref\|XP_010245964.1\|	1.7e-9	54.1	PREDICTED: uncharacterized pro...	[more]
gi\|590590407\|ref\|XP_007016725.1\|	1.7e-9	62.7	GRIP and coiled-coil domain-co...	[more]

BLAST of Spo08545.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QNV2_SPIOL	3.3e-31	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8FBY6_BETVU	1.7e-16	77.5	Uncharacterized protein OS=Bet...	[more]
W9S3E9_9ROSA	5.4e-10	56.0	Uncharacterized protein OS=Mor...	[more]
A0A061H085_THECC	1.2e-9	62.7	GRIP and coiled-coil domain-co...	[more]
A0A059AKQ0_EUCGR	2.1e-9	60.6	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo08545.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo08545.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT3G14430.1	5.7e-11	50.0	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37223	FAMILY NOT NAMED	coord: 25..69 score: 8.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009814	defense response, incompatible interaction
biological_process	GO:0010227	floral organ abscission
biological_process	GO:0010229	inflorescence development
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0015824	proline transport
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:2000037	regulation of stomatal complex patterning
biological_process	GO:0009069	serine family amino acid metabolic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08935	0.69	Barchart \| Table
Spo02932	0.68	Barchart \| Table
Spo08789	0.68	Barchart \| Table
Spo08654	0.67	Barchart \| Table
Spo04536	0.66	Barchart \| Table
Spo18195	0.66	Barchart \| Table
Spo20946	0.66	Barchart \| Table
Spo21215	0.65	Barchart \| Table