Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAAAAAAATGACATCATCAAAACAGAAAAAAAAAAAGAAAAAAGAAGTTGCTGCCTAGCTGGACACCAGCCCCATCACCGGGTCACATTACTTCGCACAAGCCCCATCAGTCCATCACCAGCTTCTGAACACCAGTCTCTCTTCTCCACCATCATCGCCGCCGGTAAATCCAAATCCTACTTTCTCTTTGTTTGCTTTTCTCAGTCTTCAATCGAGTTGGGTTTCTTGATTTTATTAATTGGTAAACCTACAATTTTTCTTTTGATAATTGTACTATGTTGATTTCCAGCTTTTTTTTTTGTAAATAATTTTCATTTAGCTTTTGTATGTTGGGTTTGTCTGTGAAATTAAGAGTGTGGAAGTTGTGTATTGATGTATTCAAATTCAAAAGTCTTCATGTTTGCTAAATTTCTGCAGAACTGTTCATCTGGGTTATTTAATCAACTACTAATCTAGTTTATTTTGCTAAATTTTCATCTTTTTTTATAATGTTAACTTATAATTTGCAAAATTAGACTCCAATTATTTGGGTATTGTATTGAAAGTAGATTATTCTTTCATTGTATTGAGCCTTGATTTCTCTATTGGTAAGCCTGGAATATATGATTCTTTCATTGTATTGAGACATAATTCTTCATTGATGCTGGAGAGTTGTTTGGGGGACTGATAATTTGCTAGGGTTGCTAACTTGTTACGTGTATGTTTTTAAATGTGACTTATAGAGTGGATGGTGAATTGCAAGGGTCTCCATGATACTGACATTTGGAACTAGATTCCGGCAATGTTCGACAAATGTGTTATCGACCTCCATCAAGATTTCGAGCTTAAGGTTTTCTATTAAAAACCTTGTTGCTTCACTTCAGAAAGTGGCTTTCTATGGTGGCAATGGGGCTCATTTTGGACTATCTTTCCTTCAAACAAGAGAGCTCAGTATGATTGGTAGTTGCAAGTAAGTTATCGCTGAACTTCCTGTGGATTTTCCAGCCTTAACTTTTGATAATCTGACCATAATGCAGTGTTCATAACCAGAAATATGAACATGCACTACTACAAGATCAGAGGAGTCAATTCCAAGCTCAAGCTGCTGCTGAACTTCTAGTTTTTTGTTTCCATTCCATTGTAAAGTTCTATCTGCCTTAATCTGACTTAAAGAATTTTGTTTGCAGGAGAACAGACTGGTCAATAAAGAGCAGTGCAGATGGCAGAGGACTGGATCCTCTAACCGGTAGTGGTGATGGAAGAACTCGATTACTTAAAACAATTCAGAGTCTACAGATTAGATTAAATGCAAGGATCCAAGATTTTCGGAAAGATCTTCCTAAAAAGTTTCTATTTTTCTTGGTGGGATTTTATTGTGCAACCGCATTTGCTACCGTGATTGGGCAAACAGGTGATTGGGACATTATGTCTGCTGCGGTGGCTGTTGCTGTGGTGGAGGGTATTGGGGCTCTTATGTACAAAGTTTCTGTACCTTTGCTTGACAGGACCAGGAATCTTATTGTTCTGTTTAATTACTGGAAAGCTGGCCTTACATTGGGTCTTTTCTTGGATTCATTCAAGTATGAATTAAGTTGAGAATATTTGCTTGCTCTCGTTTGTGTAGTACTAGACGTCCCATGTTCTGATTACTTTCCAACCTATTTTTCAGGTATTAAGGTATCAGGTGTCAACTCTTTTGAAGGCAGGGCCTTGAATTATAGTGAGGCAATTTAAGACGTTGCTGGAATGTACATTGGATTAGATATGAGGGTAAGTCCTCTAGACATCCCAATTCAATATGATCACTGATTTGTGGAACACTACAAAAGTTAGTAGGGTAACATGTACAAAGTTTGTCTATCAATATGGGGTTGGGATAGACAATTAGGGTTCAATAGCCGGGGTATAAAACGATGTCAACTTGCAATCCATGATTTTGAATATTGGAGTTTCGAGGAAATGATTCTTATGTAACATTCTTACCATGAATTGCACTTTTAATTCTATGAAGGATGATCGATCTCTTAGCCCCTTTTAGATAGATGAAAAGAGCAATAACTCATAGTTTTCGTAATTTCTAGTAAATTTCTACATTACTAAGGCTCAGTTCTCTCAGCAAAAAACAATTGAAATTCAGGAAAAAATATGTTTTTTTCAGCAAAGAATTGAGCCTAAATATGTTACTGTGATGTAGACTTCCCTTTCTTCTTTGCATCTTTGGTAAAATATTTGTATAATTCTATCCTGTAGGTTTTCTAATAACAAAAGTAGCATTACAGGACAGCGAAGGTAAAATTCTGGTTTATTGGCTTTCTTCTTTTGCAGATTTTCTGGATCTGTTTCAGGGCAGCTACATTCTGAAAGAGATGAATGTATATTGTGGATTCACAAACAATATAGAAAAACAGCACTTGCTCTGTTCATCGAAACATGTAATATACTTCGTAGATGCTAAACTTATCAGGAAACACTGATACAAAGCGAACAAAGCATGTATAGAAAAGGCGAATTTTATGTTCCTTACTTTCTACTTGTTGTTAGTTGATGACTTGATTTTTATATGCTGCTTTTCTTTGTGTAAAGATGAACACAAGTTCCCTGGTATCTAAGCATATTCAAAATATGTATTGTACATATTGTAAAGTTGATATTCAAAACTGGAAGTCACAGTTTGAGTTACTAAATTTGGATAGTTGACTTGCCTGT TAAAAAAAAATGACATCATCAAAACAGAAAAAAAAAAAGAAAAAAGAAGTTGCTGCCTAGCTGGACACCAGCCCCATCACCGGGTCACATTACTTCGCACAAGCCCCATCAGTCCATCACCAGCTTCTGAACACCAGTCTCTCTTCTCCACCATCATCGCCGCCGAGTGGATGGTGAATTGCAAGGGTCTCCATGATACTGACATTTGGAACTAGATTCCGGCAATGTTCGACAAATGTGTTATCGACCTCCATCAAGATTTCGAGCTTAAGGTTTTCTATTAAAAACCTTGTTGCTTCACTTCAGAAAGTGGCTTTCTATGGTGGCAATGGGGCTCATTTTGGACTATCTTTCCTTCAAACAAGAGAGCTCAGTATGATTGGTAGTTGCAAGAGAACAGACTGGTCAATAAAGAGCAGTGCAGATGGCAGAGGACTGGATCCTCTAACCGGTAGTGGTGATGGAAGAACTCGATTACTTAAAACAATTCAGAGTCTACAGATTAGATTAAATGCAAGGATCCAAGATTTTCGGAAAGATCTTCCTAAAAAGTTTCTATTTTTCTTGGTGGGATTTTATTGTGCAACCGCATTTGCTACCGTGATTGGGCAAACAGGTGATTGGGACATTATGTCTGCTGCGGTGGCTGTTGCTGTGGTGGAGGGTATTGGGGCTCTTATGTACAAAGTTTCTGTACCTTTGCTTGACAGGACCAGGAATCTTATTGTTCTGTTTAATTACTGGAAAGCTGGCCTTACATTGGGTCTTTTCTTGGATTCATTCAAGTATTAAGGTATCAGGTGTCAACTCTTTTGAAGGCAGGGCCTTGAATTATAGTGAGGCAATTTAAGACGTTGCTGGAATGTACATTGGATTAGATATGAGGATTTTCTGGATCTGTTTCAGGGCAGCTACATTCTGAAAGAGATGAATGTATATTGTGGATTCACAAACAATATAGAAAAACAGCACTTGCTCTGTTCATCGAAACATGTAATATACTTCGTAGATGCTAAACTTATCAGGAAACACTGATACAAAGCGAACAAAGCATGTATAGAAAAGGCGAATTTTATGTTCCTTACTTTCTACTTGTTGTTAGTTGATGACTTGATTTTTATATGCTGCTTTTCTTTGTGTAAAGATGAACACAAGTTCCCTGGTATCTAAGCATATTCAAAATATGTATTGTACATATTGTAAAGTTGATATTCAAAACTGGAAGTCACAGTTTGAGTTACTAAATTTGGATAGTTGACTTGCCTGT ATGATACTGACATTTGGAACTAGATTCCGGCAATGTTCGACAAATGTGTTATCGACCTCCATCAAGATTTCGAGCTTAAGGTTTTCTATTAAAAACCTTGTTGCTTCACTTCAGAAAGTGGCTTTCTATGGTGGCAATGGGGCTCATTTTGGACTATCTTTCCTTCAAACAAGAGAGCTCAGTATGATTGGTAGTTGCAAGAGAACAGACTGGTCAATAAAGAGCAGTGCAGATGGCAGAGGACTGGATCCTCTAACCGGTAGTGGTGATGGAAGAACTCGATTACTTAAAACAATTCAGAGTCTACAGATTAGATTAAATGCAAGGATCCAAGATTTTCGGAAAGATCTTCCTAAAAAGTTTCTATTTTTCTTGGTGGGATTTTATTGTGCAACCGCATTTGCTACCGTGATTGGGCAAACAGGTGATTGGGACATTATGTCTGCTGCGGTGGCTGTTGCTGTGGTGGAGGGTATTGGGGCTCTTATGTACAAAGTTTCTGTACCTTTGCTTGACAGGACCAGGAATCTTATTGTTCTGTTTAATTACTGGAAAGCTGGCCTTACATTGGGTCTTTTCTTGGATTCATTCAAGTATTAA MILTFGTRFRQCSTNVLSTSIKISSLRFSIKNLVASLQKVAFYGGNGAHFGLSFLQTRELSMIGSCKRTDWSIKSSADGRGLDPLTGSGDGRTRLLKTIQSLQIRLNARIQDFRKDLPKKFLFFLVGFYCATAFATVIGQTGDWDIMSAAVAVAVVEGIGALMYKVSVPLLDRTRNLIVLFNYWKAGLTLGLFLDSFKY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08645.1 vs. NCBI nr
Match: gi|902091486|gb|KNA03343.1| (hypothetical protein SOVF_210090 [Spinacia oleracea]) HSP 1 Score: 388.7 bits (997), Expect = 6.300e-105 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1
BLAST of Spo08645.1 vs. NCBI nr
Match: gi|731361157|ref|XP_010692203.1| (PREDICTED: ycf20-like protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 252.3 bits (643), Expect = 7.100e-64 Identity = 134/199 (67.34%), Postives = 151/199 (75.88%), Query Frame = 1
BLAST of Spo08645.1 vs. NCBI nr
Match: gi|225453999|ref|XP_002274644.1| (PREDICTED: ycf20-like protein [Vitis vinifera]) HSP 1 Score: 204.9 bits (520), Expect = 1.300e-49 Identity = 111/202 (54.95%), Postives = 140/202 (69.31%), Query Frame = 1
BLAST of Spo08645.1 vs. NCBI nr
Match: gi|296089191|emb|CBI38894.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 204.9 bits (520), Expect = 1.300e-49 Identity = 111/202 (54.95%), Postives = 140/202 (69.31%), Query Frame = 1
BLAST of Spo08645.1 vs. NCBI nr
Match: gi|698435386|ref|XP_009800342.1| (PREDICTED: ycf20-like protein [Nicotiana sylvestris]) HSP 1 Score: 196.8 bits (499), Expect = 3.500e-47 Identity = 105/169 (62.13%), Postives = 127/169 (75.15%), Query Frame = 1
BLAST of Spo08645.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9H4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_210090 PE=4 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 4.400e-105 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1
BLAST of Spo08645.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018850 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 4.900e-64 Identity = 134/199 (67.34%), Postives = 151/199 (75.88%), Query Frame = 1
BLAST of Spo08645.1 vs. UniProtKB/TrEMBL
Match: A0A059C452_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01444 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 7.200e-47 Identity = 102/190 (53.68%), Postives = 130/190 (68.42%), Query Frame = 1
BLAST of Spo08645.1 vs. UniProtKB/TrEMBL
Match: A0A067HDA0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027310mg PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.700e-46 Identity = 101/179 (56.42%), Postives = 122/179 (68.16%), Query Frame = 1
BLAST of Spo08645.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RCQ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G116300 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 1.300e-45 Identity = 102/193 (52.85%), Postives = 132/193 (68.39%), Query Frame = 1
BLAST of Spo08645.1 vs. ExPASy Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2) HSP 1 Score: 99.4 bits (246), Expect = 4.800e-20 Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1
BLAST of Spo08645.1 vs. ExPASy Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.000e-13 Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1
BLAST of Spo08645.1 vs. ExPASy Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.100e-8 Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 1
BLAST of Spo08645.1 vs. ExPASy Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 9.400e-8 Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 1
BLAST of Spo08645.1 vs. ExPASy Swiss-Prot
Match: YCF20_CYACA (Uncharacterized protein ycf20 OS=Cyanidium caldarium GN=ycf20 PE=3 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 6.700e-6 Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 1
BLAST of Spo08645.1 vs. TAIR (Arabidopsis)
Match: AT3G56830.1 (Protein of unknown function (DUF565)) HSP 1 Score: 160.2 bits (404), Expect = 1.300e-39 Identity = 82/151 (54.30%), Postives = 106/151 (70.20%), Query Frame = 1
BLAST of Spo08645.1 vs. TAIR (Arabidopsis)
Match: AT1G65420.1 (Protein of unknown function (DUF565)) HSP 1 Score: 99.4 bits (246), Expect = 2.700e-21 Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08645.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo08645.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo08645.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo08645.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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