Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGATCACACCACTACCCAACCTCTCAAATTCATCACCGGCGCCGACTCCTCCGGCTCCTCCATCAAAGACGCCCTCGTCTCCCACCTCCGCTCCCTCAACATCGATGTCGAAGACCTCGGCGAAGCCCCGTACTACACCATCGGCGAGAAGATCGGAAGGCGAGTTTCCGCCGGCGGATCCACCACCCGCGGCCTCGTCGCGTGTGGTACCGGTGTAGGCGTTCAGATATTTGCGAACAAAGTCCCCGGAGTTTACGCCGCCACTTGCGTCACCGCCGATGAGGCTAAAAACACCCGGTCCATCAACAATGCCAACGTCCTTGCTGTCTCTGGCATATCAACTCCCCCCGAAACCGCCATTGAAATCCTTGAAACCTTCATCAACACCCCCTTCAAGTCCCCCTGCCCCGCGTCCGGCAACAAGGAATATGCCCCAGAAGTGGAGGACTTCCTCAACAAATCCATCCCAGAGATGGAGAAAATCGGAAAATCGACATCAGAATCAGAAGAGGCGTGCGCCATTTGCTGCTTAGCAAAGAACAGGGAGTTTGTTCCTGTGGAGATAATGCCCGGAGGGATGATGAAGATAGTGAGAGAAAGTCCGACATCAGCAATTATCCGGTTCGAAGCCGGGAGTGTGGAGCCTGCTCATCACCATAGCTTTGGGCATGATTTGTTTGTGATGAAGGGAAAGAAGACGGTGTGGAATTTGAGTAAGAAGGAGAAGTATGATCTGAGTGATGGAGATTATCTGTTTACTCCAGCTGGGGATATTCACAGAGTTAAGTATTTGGAGGATACTGAGTTCTTTCTTAAGTGGGATGGTCCTTGGGATATTATCTTGGATGAGGATCTTCAATCTGCCAAGGCTGCTATTGCTAAGGAGGACTCCTGA ATGGCCGATCACACCACTACCCAACCTCTCAAATTCATCACCGGCGCCGACTCCTCCGGCTCCTCCATCAAAGACGCCCTCGTCTCCCACCTCCGCTCCCTCAACATCGATGTCGAAGACCTCGGCGAAGCCCCGTACTACACCATCGGCGAGAAGATCGGAAGGCGAGTTTCCGCCGGCGGATCCACCACCCGCGGCCTCGTCGCGTGTGGTACCGGTGTAGGCGTTCAGATATTTGCGAACAAAGTCCCCGGAGTTTACGCCGCCACTTGCGTCACCGCCGATGAGGCTAAAAACACCCGGTCCATCAACAATGCCAACGTCCTTGCTGTCTCTGGCATATCAACTCCCCCCGAAACCGCCATTGAAATCCTTGAAACCTTCATCAACACCCCCTTCAAGTCCCCCTGCCCCGCGTCCGGCAACAAGGAATATGCCCCAGAAGTGGAGGACTTCCTCAACAAATCCATCCCAGAGATGGAGAAAATCGGAAAATCGACATCAGAATCAGAAGAGGCGTGCGCCATTTGCTGCTTAGCAAAGAACAGGGAGTTTGTTCCTGTGGAGATAATGCCCGGAGGGATGATGAAGATAGTGAGAGAAAGTCCGACATCAGCAATTATCCGGTTCGAAGCCGGGAGTGTGGAGCCTGCTCATCACCATAGCTTTGGGCATGATTTGTTTGTGATGAAGGGAAAGAAGACGGTGTGGAATTTGAGTAAGAAGGAGAAGTATGATCTGAGTGATGGAGATTATCTGTTTACTCCAGCTGGGGATATTCACAGAGTTAAGTATTTGGAGGATACTGAGTTCTTTCTTAAGTGGGATGGTCCTTGGGATATTATCTTGGATGAGGATCTTCAATCTGCCAAGGCTGCTATTGCTAAGGAGGACTCCTGA ATGGCCGATCACACCACTACCCAACCTCTCAAATTCATCACCGGCGCCGACTCCTCCGGCTCCTCCATCAAAGACGCCCTCGTCTCCCACCTCCGCTCCCTCAACATCGATGTCGAAGACCTCGGCGAAGCCCCGTACTACACCATCGGCGAGAAGATCGGAAGGCGAGTTTCCGCCGGCGGATCCACCACCCGCGGCCTCGTCGCGTGTGGTACCGGTGTAGGCGTTCAGATATTTGCGAACAAAGTCCCCGGAGTTTACGCCGCCACTTGCGTCACCGCCGATGAGGCTAAAAACACCCGGTCCATCAACAATGCCAACGTCCTTGCTGTCTCTGGCATATCAACTCCCCCCGAAACCGCCATTGAAATCCTTGAAACCTTCATCAACACCCCCTTCAAGTCCCCCTGCCCCGCGTCCGGCAACAAGGAATATGCCCCAGAAGTGGAGGACTTCCTCAACAAATCCATCCCAGAGATGGAGAAAATCGGAAAATCGACATCAGAATCAGAAGAGGCGTGCGCCATTTGCTGCTTAGCAAAGAACAGGGAGTTTGTTCCTGTGGAGATAATGCCCGGAGGGATGATGAAGATAGTGAGAGAAAGTCCGACATCAGCAATTATCCGGTTCGAAGCCGGGAGTGTGGAGCCTGCTCATCACCATAGCTTTGGGCATGATTTGTTTGTGATGAAGGGAAAGAAGACGGTGTGGAATTTGAGTAAGAAGGAGAAGTATGATCTGAGTGATGGAGATTATCTGTTTACTCCAGCTGGGGATATTCACAGAGTTAAGTATTTGGAGGATACTGAGTTCTTTCTTAAGTGGGATGGTCCTTGGGATATTATCTTGGATGAGGATCTTCAATCTGCCAAGGCTGCTATTGCTAAGGAGGACTCCTGA MADHTTTQPLKFITGADSSGSSIKDALVSHLRSLNIDVEDLGEAPYYTIGEKIGRRVSAGGSTTRGLVACGTGVGVQIFANKVPGVYAATCVTADEAKNTRSINNANVLAVSGISTPPETAIEILETFINTPFKSPCPASGNKEYAPEVEDFLNKSIPEMEKIGKSTSESEEACAICCLAKNREFVPVEIMPGGMMKIVRESPTSAIIRFEAGSVEPAHHHSFGHDLFVMKGKKTVWNLSKKEKYDLSDGDYLFTPAGDIHRVKYLEDTEFFLKWDGPWDIILDEDLQSAKAAIAKEDS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08682.1 vs. NCBI nr
Match: gi|902197906|gb|KNA13550.1| (hypothetical protein SOVF_115650 [Spinacia oleracea]) HSP 1 Score: 603.2 bits (1554), Expect = 2.500e-169 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1
BLAST of Spo08682.1 vs. NCBI nr
Match: gi|731328054|ref|XP_010674841.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-damage-repair/toleration protein DRT102 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 500.7 bits (1288), Expect = 1.700e-138 Identity = 247/315 (78.41%), Postives = 272/315 (86.35%), Query Frame = 1
BLAST of Spo08682.1 vs. NCBI nr
Match: gi|719972385|ref|XP_010277369.1| (PREDICTED: DNA-damage-repair/toleration protein DRT102 [Nelumbo nucifera]) HSP 1 Score: 436.4 bits (1121), Expect = 4.000e-119 Identity = 207/296 (69.93%), Postives = 248/296 (83.78%), Query Frame = 1
BLAST of Spo08682.1 vs. NCBI nr
Match: gi|823196262|ref|XP_012492872.1| (PREDICTED: DNA-damage-repair/toleration protein DRT102 [Gossypium raimondii]) HSP 1 Score: 422.2 bits (1084), Expect = 7.800e-115 Identity = 203/302 (67.22%), Postives = 248/302 (82.12%), Query Frame = 1
BLAST of Spo08682.1 vs. NCBI nr
Match: gi|470132303|ref|XP_004302024.1| (PREDICTED: DNA-damage-repair/toleration protein DRT102 [Fragaria vesca subsp. vesca]) HSP 1 Score: 419.9 bits (1078), Expect = 3.800e-114 Identity = 202/303 (66.67%), Postives = 250/303 (82.51%), Query Frame = 1
BLAST of Spo08682.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R222_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_115650 PE=4 SV=1) HSP 1 Score: 603.2 bits (1554), Expect = 1.700e-169 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1
BLAST of Spo08682.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SLE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G285000 PE=4 SV=1) HSP 1 Score: 422.2 bits (1084), Expect = 5.400e-115 Identity = 203/302 (67.22%), Postives = 248/302 (82.12%), Query Frame = 1
BLAST of Spo08682.1 vs. UniProtKB/TrEMBL
Match: W9QKH1_9ROSA (DNA-damage-repair/toleration protein OS=Morus notabilis GN=L484_006170 PE=4 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 6.000e-114 Identity = 196/303 (64.69%), Postives = 247/303 (81.52%), Query Frame = 1
BLAST of Spo08682.1 vs. UniProtKB/TrEMBL
Match: A5BLF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010562 PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 8.600e-113 Identity = 193/297 (64.98%), Postives = 243/297 (81.82%), Query Frame = 1
BLAST of Spo08682.1 vs. UniProtKB/TrEMBL
Match: F6HTT7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01720 PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 8.600e-113 Identity = 193/297 (64.98%), Postives = 243/297 (81.82%), Query Frame = 1
BLAST of Spo08682.1 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=1 SV=2) HSP 1 Score: 417.2 bits (1071), Expect = 1.600e-115 Identity = 201/300 (67.00%), Postives = 243/300 (81.00%), Query Frame = 1
BLAST of Spo08682.1 vs. ExPASy Swiss-Prot
Match: LACB_STRMU (Galactose-6-phosphate isomerase subunit LacB OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=lacB PE=3 SV=2) HSP 1 Score: 63.9 bits (154), Expect = 3.400e-9 Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 1
BLAST of Spo08682.1 vs. ExPASy Swiss-Prot
Match: LACB1_STRA3 (Galactose-6-phosphate isomerase subunit LacB 1 OS=Streptococcus agalactiae serotype III (strain NEM316) GN=lacB1 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 7.500e-9 Identity = 45/152 (29.61%), Postives = 71/152 (46.71%), Query Frame = 1
BLAST of Spo08682.1 vs. ExPASy Swiss-Prot
Match: LACB_LACLL (Galactose-6-phosphate isomerase subunit LacB OS=Lactococcus lactis subsp. lactis GN=lacB PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 9.800e-9 Identity = 45/146 (30.82%), Postives = 66/146 (45.21%), Query Frame = 1
BLAST of Spo08682.1 vs. ExPASy Swiss-Prot
Match: LACB_STRSV (Galactose-6-phosphate isomerase subunit LacB OS=Streptococcus sanguinis (strain SK36) GN=lacB PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.300e-8 Identity = 46/146 (31.51%), Postives = 66/146 (45.21%), Query Frame = 1
BLAST of Spo08682.1 vs. TAIR (Arabidopsis)
Match: AT3G04880.1 (DNA-damage-repair/toleration protein (DRT102)) HSP 1 Score: 417.2 bits (1071), Expect = 8.800e-117 Identity = 201/300 (67.00%), Postives = 243/300 (81.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08682.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08682.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08682.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08682.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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