Spo08695 (gene) | SpinachBase

Overview


Name	Spo08695
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr2 : 103434 .. 103808 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAACTTTATTCAAGAAACAGGAAATATAGAAATGTCATAGAGGTGTTTGAGAAGATGAGAGCAGCAAGATACTTCCCCAATTCAAATGTTATTTCTCTTGCCTTGAATGCTTATGGAAAAGTCAGAGATTTTGAGAGGGCTGATTTAGTGTATAGAGAGATGCAAGAAGAGGGCTGTATTTTCCCTGATGAAGTTCATTTCCAAATGTTAAGTCTGCATGGGGCAAGAGGTGACTTTGAGACTGTGGAATTACTTTTCAAGGCGCTGGATTCTGACCCGAACATAAACAAGAAGGAATTGCATCTAGTTGTTTGTAACGCATATAAATCAGCTAAAAGACTCAGTGATGCTGCTACAGTCGTCTCATAA

mRNA sequence

ATGATTGAACTTTATTCAAGAAACAGGAAATATAGAAATGTCATAGAGGTGTTTGAGAAGATGAGAGCAGCAAGATACTTCCCCAATTCAAATGTTATTTCTCTTGCCTTGAATGCTTATGGAAAAGTCAGAGATTTTGAGAGGGCTGATTTAGTGTATAGAGAGATGCAAGAAGAGGGCTGTATTTTCCCTGATGAAGTTCATTTCCAAATGTTAAGTCTGCATGGGGCAAGAGGTGACTTTGAGACTGTGGAATTACTTTTCAAGGCGCTGGATTCTGACCCGAACATAAACAAGAAGGAATTGCATCTAGTTGTTTGTAACGCATATAAATCAGCTAAAAGACTCAGTGATGCTGCTACAGTCGTCTCATAA

Coding sequence (CDS)

ATGATTGAACTTTATTCAAGAAACAGGAAATATAGAAATGTCATAGAGGTGTTTGAGAAGATGAGAGCAGCAAGATACTTCCCCAATTCAAATGTTATTTCTCTTGCCTTGAATGCTTATGGAAAAGTCAGAGATTTTGAGAGGGCTGATTTAGTGTATAGAGAGATGCAAGAAGAGGGCTGTATTTTCCCTGATGAAGTTCATTTCCAAATGTTAAGTCTGCATGGGGCAAGAGGTGACTTTGAGACTGTGGAATTACTTTTCAAGGCGCTGGATTCTGACCCGAACATAAACAAGAAGGAATTGCATCTAGTTGTTTGTAACGCATATAAATCAGCTAAAAGACTCAGTGATGCTGCTACAGTCGTCTCATAA

Protein sequence

MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEGCIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAATVVS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo08695.1	Spo08695.1	mRNA

Homology

[Close]

BLAST of Spo08695.1 vs. NCBI nr
Match: gi|902154076|gb|KNA05780.1| (hypothetical protein SOVF_187120 [Spinacia oleracea])

HSP 1 Score: 248.1 bits (632), Expect = 8.300e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG
Sbjct: 513 MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 572

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA
Sbjct: 573 CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 632

Query: 121 TVVS 125
           TVVS
Sbjct: 633 TVVS 636

[Close]

BLAST of Spo08695.1 vs. NCBI nr
Match: gi|902210495|gb|KNA16453.1| (hypothetical protein SOVF_088620 [Spinacia oleracea])

HSP 1 Score: 240.4 bits (612), Expect = 1.700e-60
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREM+EEG
Sbjct: 541 MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMREEG 600

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVV NAYKSAKRLSDAA
Sbjct: 601 CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVRNAYKSAKRLSDAA 660

Query: 121 TVVS 125
           TV++
Sbjct: 661 TVIN 664

[Close]

BLAST of Spo08695.1 vs. NCBI nr
Match: gi|731320132|ref|XP_010670642.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 201.4 bits (511), Expect = 8.900e-49
Identity = 97/124 (78.23%), Postives = 113/124 (91.13%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKY NVI+VFEKMR A YFPNSNVI+L+LNAYGKVR+FE ADLVY+EM+EEG
Sbjct: 541 MIELYSRNRKYTNVIDVFEKMRRAGYFPNSNVIALSLNAYGKVREFEMADLVYKEMREEG 600

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           C+FPDEVHFQMLSL+GARGD +T+E LF+ L+SDPNINKKELH+VV NAYKSAKRL+DA 
Sbjct: 601 CMFPDEVHFQMLSLYGARGDLKTMESLFEMLNSDPNINKKELHIVVSNAYKSAKRLNDAD 660

Query: 121 TVVS 125
             ++
Sbjct: 661 RTIN 664

[Close]

BLAST of Spo08695.1 vs. NCBI nr
Match: gi|698500442|ref|XP_009795979.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 189.9 bits (481), Expect = 2.700e-45
Identity = 89/124 (71.77%), Postives = 109/124 (87.90%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKY N+IEVFEKMR A YFPNSNVI+L LNAYGK+R+FE+AD+VY+EMQEEG
Sbjct: 545 MIELYSRNRKYTNLIEVFEKMRGAGYFPNSNVIALVLNAYGKLREFEKADMVYKEMQEEG 604

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           C+F DEVHFQMLSL+GAR +FE VE L++ LDS+PN+NKKELHLVV   Y+ A R++DA+
Sbjct: 605 CVFSDEVHFQMLSLYGARKNFEMVETLYQKLDSNPNVNKKELHLVVAGIYEKANRVNDAS 664

Query: 121 TVVS 125
            +V+
Sbjct: 665 RIVN 668

[Close]

BLAST of Spo08695.1 vs. NCBI nr
Match: gi|697186497|ref|XP_009602284.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 188.7 bits (478), Expect = 6.000e-45
Identity = 88/124 (70.97%), Postives = 109/124 (87.90%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MI+LYSRNRKY N+IEVFEKMR A YFPNSNVI+L LNAYGK+R+FE+AD+VY+EMQEEG
Sbjct: 543 MIDLYSRNRKYTNLIEVFEKMRGAGYFPNSNVIALVLNAYGKLREFEKADMVYKEMQEEG 602

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           C+F DEVHFQMLSL+GAR +FE VE L++ LDS+PN+NKKELHLVV   Y+ A R++DA+
Sbjct: 603 CVFSDEVHFQMLSLYGARKNFEMVETLYEKLDSNPNVNKKELHLVVAGIYEKANRVNDAS 662

Query: 121 TVVS 125
            +V+
Sbjct: 663 RIVN 666

[Close]

BLAST of Spo08695.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QET5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_187120 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 5.800e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG
Sbjct: 513 MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 572

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA
Sbjct: 573 CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 632

Query: 121 TVVS 125
           TVVS
Sbjct: 633 TVVS 636

[Close]

BLAST of Spo08695.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAA9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088620 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.200e-60
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREM+EEG
Sbjct: 541 MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMREEG 600

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVV NAYKSAKRLSDAA
Sbjct: 601 CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVRNAYKSAKRLSDAA 660

Query: 121 TVVS 125
           TV++
Sbjct: 661 TVIN 664

[Close]

BLAST of Spo08695.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CSQ2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042820 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.200e-49
Identity = 97/124 (78.23%), Postives = 113/124 (91.13%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKY NVI+VFEKMR A YFPNSNVI+L+LNAYGKVR+FE ADLVY+EM+EEG
Sbjct: 541 MIELYSRNRKYTNVIDVFEKMRRAGYFPNSNVIALSLNAYGKVREFEMADLVYKEMREEG 600

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           C+FPDEVHFQMLSL+GARGD +T+E LF+ L+SDPNINKKELH+VV NAYKSAKRL+DA 
Sbjct: 601 CMFPDEVHFQMLSLYGARGDLKTMESLFEMLNSDPNINKKELHIVVSNAYKSAKRLNDAD 660

Query: 121 TVVS 125
             ++
Sbjct: 661 RTIN 664

[Close]

BLAST of Spo08695.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IFM3_SOLCH (Putative pentatricopeptide repeat-containing protein, chloroplastic-like (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.200e-45
Identity = 88/124 (70.97%), Postives = 108/124 (87.10%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKY N+IEVFEKMR A YFPNSNVI+L LNAYGK+++FE+AD+VY+EM EEG
Sbjct: 445 MIELYSRNRKYTNLIEVFEKMRGAGYFPNSNVIALVLNAYGKLQEFEKADMVYKEMHEEG 504

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           C+F DEVHFQMLSL+GAR ++E VE L+K LDSDPN+NKKELHLVV   Y+ A R++DA+
Sbjct: 505 CVFSDEVHFQMLSLYGARRNYEMVETLYKMLDSDPNVNKKELHLVVAGIYEKANRVNDAS 564

Query: 121 TVVS 125
            +V+
Sbjct: 565 RIVN 568

[Close]

BLAST of Spo08695.1 vs. UniProtKB/TrEMBL
Match: M0ZLD6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001306 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.200e-44
Identity = 87/124 (70.16%), Postives = 107/124 (86.29%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MIELYSRNRKY N+IEVFEKMR   YFPNSNVI+L LNAYGK+++FE+AD+VY+EM EEG
Sbjct: 451 MIELYSRNRKYTNLIEVFEKMRGTGYFPNSNVIALVLNAYGKLQEFEKADMVYKEMHEEG 510

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           C+F DEVHFQMLSL+GAR ++E VE L+K LDSDPN+NKKELHLVV   Y+ A R++DA+
Sbjct: 511 CVFSDEVHFQMLSLYGARRNYEMVETLYKMLDSDPNVNKKELHLVVAGIYEKANRVNDAS 570

Query: 121 TVVS 125
            +V+
Sbjct: 571 RIVN 574

[Close]

BLAST of Spo08695.1 vs. ExPASy Swiss-Prot
Match: PP408_ARATH (Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.000e-44
Identity = 85/124 (68.55%), Postives = 105/124 (84.68%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MI LYSRN++Y NVIEVFEKMR A YFP+SNVI++ LNAYGK R+FE+AD VYREMQEEG
Sbjct: 542 MINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEG 601

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           C+FPDEVHFQMLSL+ ++ DFE VE LF+ L+SDPN+N KELHLVV   Y+ A +L+DA+
Sbjct: 602 CVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERADKLNDAS 661

Query: 121 TVVS 125
            V++
Sbjct: 662 RVMN 665

[Close]

BLAST of Spo08695.1 vs. TAIR (Arabidopsis)
Match: AT5G39980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 179.1 bits (453), Expect = 1.700e-45
Identity = 85/124 (68.55%), Postives = 105/124 (84.68%), Query Frame = 1


		  
Query: 1   MIELYSRNRKYRNVIEVFEKMRAARYFPNSNVISLALNAYGKVRDFERADLVYREMQEEG 60
           MI LYSRN++Y NVIEVFEKMR A YFP+SNVI++ LNAYGK R+FE+AD VYREMQEEG
Sbjct: 542 MINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEG 601

Query: 61  CIFPDEVHFQMLSLHGARGDFETVELLFKALDSDPNINKKELHLVVCNAYKSAKRLSDAA 120
           C+FPDEVHFQMLSL+ ++ DFE VE LF+ L+SDPN+N KELHLVV   Y+ A +L+DA+
Sbjct: 602 CVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERADKLNDAS 661

Query: 121 TVVS 125
            V++
Sbjct: 662 RVMN 665

The following BLAST results are available for this feature:

BLAST of Spo08695.1 vs. NCBI nr
BLAST of Spo08695.1 vs. UniProtKB/TrEMBL
BLAST of Spo08695.1 vs. ExPASy Swiss-Prot
BLAST of Spo08695.1 vs. TAIR (Arabidopsis)

BLAST of Spo08695.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902154076\|gb\|KNA05780.1\|	8.3e-63	100.	hypothetical protein SOVF_1871...	[more]
gi\|902210495\|gb\|KNA16453.1\|	1.7e-60	96.7	hypothetical protein SOVF_0886...	[more]
gi\|731320132\|ref\|XP_010670642.1\|	8.9e-49	78.2	PREDICTED: pentatricopeptide r...	[more]
gi\|698500442\|ref\|XP_009795979.1\|	2.7e-45	71.7	PREDICTED: pentatricopeptide r...	[more]
gi\|697186497\|ref\|XP_009602284.1\|	6.0e-45	70.9	PREDICTED: pentatricopeptide r...	[more]

BLAST of Spo08695.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QET5_SPIOL	5.8e-63	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RAA9_SPIOL	1.2e-60	96.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8CSQ2_BETVU	6.2e-49	78.2	Uncharacterized protein OS=Bet...	[more]
A0A0V0IFM3_SOLCH	4.2e-45	70.9	Putative pentatricopeptide rep...	[more]
M0ZLD6_SOLTU	1.2e-44	70.1	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo08695.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
PP408_ARATH	3.0e-44	68.5	Pentatricopeptide repeat-conta...	[more]

BLAST of Spo08695.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G39980.1	1.7e-45	68.5	Tetratricopeptide repeat (TPR)...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 1..23 score: 0.0055coord: 37..61 score: 4.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 37..65 score: 7.1E-7coord: 1..29 score: 0.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 1..28 score: 8.276coord: 29..63 score:
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..123 score: 1.3
None	No IPR available	PANTHER	PTHR24015:SF551	SUBFAMILY NOT NAMED	coord: 1..123 score: 1.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0061025	membrane fusion
biological_process	GO:0009616	virus induced gene silencing
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0051510	regulation of unidimensional cell growth
biological_process	GO:0032875	regulation of DNA endoreduplication
biological_process	GO:0051302	regulation of cell division
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0009561	megagametogenesis
biological_process	GO:0007276	gamete generation
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0019530	taurine metabolic process
biological_process	GO:0015860	purine nucleoside transmembrane transport
biological_process	GO:0048653	anther development
biological_process	GO:0015867	ATP transport
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0006839	mitochondrial transport
biological_process	GO:1901679	nucleotide transmembrane transport
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0032482	Rab protein signal transduction
biological_process	GO:0006396	RNA processing
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005819	spindle
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005773	vacuole
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0042644	chloroplast nucleoid
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0015238	drug transmembrane transporter activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0047800	cysteamine dioxygenase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0005347	ATP transmembrane transporter activity
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0019003	GDP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13238	0.71	Barchart \| Table
Spo10585	0.71	Barchart \| Table
Spo05529	0.70	Barchart \| Table
Spo17490	0.70	Barchart \| Table
Spo21501	0.70	Barchart \| Table
Spo08533	0.70	Barchart \| Table
Spo25874	0.68	Barchart \| Table
Spo00161	0.68	Barchart \| Table
Spo17305	0.67	Barchart \| Table
Spo03027	0.67	Barchart \| Table
Spo03057	0.67	Barchart \| Table
Spo09150	0.67	Barchart \| Table
Spo23127	0.67	Barchart \| Table
Spo00155	0.66	Barchart \| Table
Spo02816	0.66	Barchart \| Table
Spo04104	0.66	Barchart \| Table
Spo13708	0.66	Barchart \| Table
Spo15927	0.66	Barchart \| Table
Spo22666	0.66	Barchart \| Table
Spo27030	0.66	Barchart \| Table
Spo11193	0.65	Barchart \| Table
Spo20456	0.65	Barchart \| Table
Spo20749	0.65	Barchart \| Table
Spo06106	0.65	Barchart \| Table
Spo12219	0.65	Barchart \| Table
Spo05640	0.65	Barchart \| Table
Spo05709	0.65	Barchart \| Table
Spo12143	0.65	Barchart \| Table