Spo08741 (gene)

Overview
NameSpo08741
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 113305201 .. 113307597 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAACAGCGAAAAATTTCCTTAAGGCACCTTCACCGTACTTCATTCCTCCCTCTGCTCCTTCACCGTAATTCATCACATCGCTGGCGCCGCTCCCTCCTCCCTCTCCTCCTTCACCGTCGCTGGCCGCTGCTCCCTCCTCCATCTCCTCCTTCACTGTCGCTTGCCGCTGCTCCCTCCTCCCTCTGCTCCTTCACCGTCTAACCGTCTTTTTGTTGCAAATTCGCCTGGCCAAATTGTTTTCTTCCTACCACTACAGCTCTAAACAGAAGTAGAGGCAAAAGCAGAAGAAGCTTAATCAATGGATAGTTGCTTCAGGACTTCAATTTGCCGCCAAATGCGCCGGAAGATGCTCGTGTTCGGTGGCGGAAAGCCGTCGGATCACTCATTCTCAATCGCCGTCGTCGTTTCCGTTATGTTACTAATCTTAAAAAACGCTCTCAAGATGCCAAAACTCTTCAGGTTCTTTCTAACTTATGGTTGACTTTCTGTTCCTTTTGCCGACGAATTTCTCCTAGTCGGTTTAGGATTTTGGAATTGGGGATTTTTGGAAATTAGGGTTCATGACATTGGGACGAATTGGGTTGGTGTTCGATTTGAGTATTATTGTGTGGTTTTGGTGTTTGATTGAGATAATTAGTTTACTTGATCAGTAGGGTTTATTGTCAATTACTGTTGATTGTATTGAATTGTTTATGGTTGGTTTATTGTCGAGTTATCCATATTCATTAGCATTTGTAGGATCATTTGATGCATTATAGAAAAAACAAACACATTTTACATACTTAACCTTAAATGTAATATCAACCATTCAAAAGTGTCAATACAGAATATGGATTTCTTTACAGGTTATCACTAAAGAATGAAATAGTTTGCGCTTTTCAATCCCAAATCATTAGCAGTTAAGGAGTATAAGTAGAAGAAATAGGGAAGATGAAGTTTCTTGGCATATGCAATCAGGATTTGGTGTTGTTTTCTCTCACTACCATTTCTTCTTTCGGGGTAGCAACGCTAATATGTCATCTAGTTTATGAGAAAACATGAAAAATCTTCTAGGAATGGTTCTTTGCTAGGAGGAATATGAACTGTGAAGAAATATCCTAAAAAGTTTATTACTTCGGTATACTATGAGAATATCTTATTCCTTTATGAATAGTTGAATAGAACTAGTACTTCATAGTTGATAGTTTATGTTGGGTGGGGTCCCGACAAAGCTGTTTCGTACCTCGAATCTTTTCTTCAGAGTAGAAGACATACCTTGAGTGTGGTGGTCTGCATGCTCTCACATTTCCTGCTGGAGAACTCCTGCGAATTACAGTTTGATAGATGTTGGTGAATACATTGCATAGAAAGTTGGTTGATCTGTTCTTCCAAAACCGGAGATAGCTAGCTTGTTGCATATGGTAAATTAACTTGGGATGAAAAAGTGGGAATTTTCCTCTATATTGATAGTAAGAGTCTGAGGTTAATAGTTTCTTTGACTTTTGTTGTTATGAGTCAGATTGATCTGAGTTTTTCTAGAAAAGAGGTGTGATGTGAAAACATTATTATTACATTGCTGGTGAGTCAGATTGATCTGAATTGATTTTATGAGTCAGATTGATCTGAATTGATTTTATGAGTCAGATTGATCTGAATTGATTAATGTTTTGACGAGGAAAGATAAACTTCACGGTATTGGGGGGTATTTCTAAATTTTTAATTTATTCATGTGGTATTTGATTCAGGTGTTCATGTTTCTTGCTGGAGATTTTGATCTCGATAATGCTGGAGGTTTGATGAGATGGTTGCTGGTTGCTGAAAGACGTGCATTTGACTACTTGTGCATTTGACTACTTGATCATAAGTTGTACTCGGGTGTTGTTTCAGTTATTCAGTTCCACTTCTTGGTCTTGTACATTTTGATCTTTTCATCCGGGTAGCTCATTCAGAATTAGGTGAATTTATCCTTTCTTATTGGACTAGGTACTTCAATTTGACTGTTGATGTTTTAATTCATGGAAATTCTCTCTTGATTAGTGTAGACACCTAATTTGTGCCCCTCTGGGATGATGACGATACCATTATCCTTACTAGGCGGTTGGAGCAACTCCATGCGGAAATCCCAATTGCTAAGAACATCTCCAAAATACAAGATCCAAAATCCAATCCCCGAGGCCATTCCCCTTCCAGAACTCGGTACAAAATTTAATTTTCAAAAAACAATTTCAAAATCCAAGTACAATCTCATCTAGTGGACCATTCCATTGGTTTTACTAAGCCTTTTCAACTCAAAATCATATAAGGCAAGTCAAATTCGGGCGCAGACCCACAAAACCGAGCAAGCCGGGCCCCGTCCCGAACAACCGGAATTCAAAACCCGAAACGACTTGTTTTTAGACGTAAAATCAAGTCTAA

mRNA sequence

AATAAACAGCGAAAAATTTCCTTAAGGCACCTTCACCGTACTTCATTCCTCCCTCTGCTCCTTCACCGTAATTCATCACATCGCTGGCGCCGCTCCCTCCTCCCTCTCCTCCTTCACCGTCGCTGGCCGCTGCTCCCTCCTCCATCTCCTCCTTCACTGTCGCTTGCCGCTGCTCCCTCCTCCCTCTGCTCCTTCACCGTCTAACCGTCTTTTTGTTGCAAATTCGCCTGGCCAAATTGTTTTCTTCCTACCACTACAGCTCTAAACAGAAGTAGAGGCAAAAGCAGAAGAAGCTTAATCAATGGATAGTTGCTTCAGGACTTCAATTTGCCGCCAAATGCGCCGGAAGATGCTCGTGTTCGGTGGCGGAAAGCCGTCGGATCACTCATTCTCAATCGCCGTCGTCGTTTCCGTTATGTTACTAATCTTAAAAAACGCTCTCAAGATGCCAAAACTCTTCAGGTGTTCATGTTTCTTGCTGGAGATTTTGATCTCGATAATGCTGGAGGTTTGATGAGATGGTTGCTGGTTGCTGAAAGACGTGCATTTGACTACTTGTGCATTTGACTACTTGATCATAAGTTGTACTCGGGTGTTGTTTCAGTTATTCAGTTCCACTTCTTGGTCTTGTACATTTTGATCTTTTCATCCGGGTAGCTCATTCAGAATTAGGTGAATTTATCCTTTCTTATTGGACTAGGTACTTCAATTTGACTGTTGATGTTTTAATTCATGGAAATTCTCTCTTGATTAGTGTAGACACCTAATTTGTGCCCCTCTGGGATGATGACGATACCATTATCCTTACTAGGCGGTTGGAGCAACTCCATGCGGAAATCCCAATTGCTAAGAACATCTCCAAAATACAAGATCCAAAATCCAATCCCCGAGGCCATTCCCCTTCCAGAACTCGGTACAAAATTTAATTTTCAAAAAACAATTTCAAAATCCAAGTACAATCTCATCTAGTGGACCATTCCATTGGTTTTACTAAGCCTTTTCAACTCAAAATCATATAAGGCAAGTCAAATTCGGGCGCAGACCCACAAAACCGAGCAAGCCGGGCCCCGTCCCGAACAACCGGAATTCAAAACCCGAAACGACTTGTTTTTAGACGTAAAATCAAGTCTAA

Coding sequence (CDS)

ATGGATAGTTGCTTCAGGACTTCAATTTGCCGCCAAATGCGCCGGAAGATGCTCGTGTTCGGTGGCGGAAAGCCGTCGGATCACTCATTCTCAATCGCCGTCGTCGTTTCCGTTATGTTACTAATCTTAAAAAACGCTCTCAAGATGCCAAAACTCTTCAGGTGTTCATGTTTCTTGCTGGAGATTTTGATCTCGATAATGCTGGAGGTTTGA

Protein sequence

MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLFRCSCFLLEILISIMLEV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08741.1Spo08741.1mRNA


Homology
[Close]
BLAST of Spo08741.1 vs. NCBI nr
Match: gi|902234966|gb|KNA23666.1| (hypothetical protein SOVF_022810, partial [Spinacia oleracea])

HSP 1 Score: 107.8 bits (268), Expect = 7.600e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 

		  

Query: 1  MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF 54
          MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF
Sbjct: 1  MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF 53
[Close]
BLAST of Spo08741.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVW7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_022810 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.300e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 

		  

Query: 1  MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF 54
          MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF
Sbjct: 1  MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF 53
The following BLAST results are available for this feature:
BLAST of Spo08741.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902234966|gb|KNA23666.1|7.6e-21100.hypothetical protein SOVF_0228... [more]
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BLAST of Spo08741.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RVW7_SPIOL5.3e-21100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo08741.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08741.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo146780.72Barchart | Table
Spo181850.70Barchart | Table