Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTTTAGTTTTATTCGGTCCACAGTGGGTGGGAACCGGGAAAGTGGGAGTGGGGAGTGGATATCCTGGAATTGGATGATGAAGGAAAGGGTCAGAAAAGGGACATGGTTTGGTCTTTCATTTTTAATTAATAATTAATTAAGTAATAATAGTAATAAAGAATAACAGTTGACGAAGTAAGTGTTTATATTATGGAATACAATTCCGTCTGAATTCCATCGCAGCTGAGCCAGCAGAAGAAGTGAGTACGAAAGCAAACAAAAAAAAGACTCCAGGTTTGAGAAGAGAATTCTGTATTCTGTATTTTCTTTTTTCTTCATTGATTTTCTCATTTCTATTCTTTGTTCTAGGGTTTTGATAAATTTCTCTGAGATTTCTGGTAATTTAATTTGCTTCTTAAAAGCTTCTTACTTGTAATTAACATGAATAATGGATCCACCTTATTTCCCCTGTCCTTTTTGAAGGTTGTTACGCTCTGTATGACCGTATCAGTGTATTGTACGGAGTAGTAGTATTGACTAGTGTTTAATCAAGTAATCGCCTTTCGAAAGTAATGATTGCCTTTGAGAAAGGCTCCTGTAACAAGCGGGTTAAGGGGGTCGTGGAGTGAGTAATGTAAGTTAAAATTGGGTTTGATGTGCAGATCTGGAATGTCGAATCCTACAGCCATTCTGAAAGTAGTGGCGGTGCAAGGCAAGAGGTTGGTTATTAGAGACTTCAAAACCAGTGATCCTTATATCAAATTCAAGCTTGGCGATCAGGTTCCTACTTTTCTTTCTTTCCACTTTCTTAACCAATTTCAAACATATAACTGTTAACATAATCCATTACATGAAATCATGTTCCTTTCTCGACCCTCCAGGAAAATAATTCTAATCTTACTAAGTATTTAGTTTTGAAAATACTATACTTTTTGAGTTCATCAAATTGGTTTATGATATCTCATATTCTCATCACGAGCAAGTTTATGTCAAAAGTGGTTTGTGTTCAAAGTGATTGCTATTTGGTACTCCGTACTTATTAGTCTGTTATTGGTATACCAATACGCTACTAATTATTGGTATACCAATACGCTACTAATTATTGGTATACCAATACGCTACTAATTAGTACCAACAAGAATCACTTGTGTTATTGTCACTAAAATAAATAAATTGTATTGAATGACCTTTGTCCAACTTGATCACAAGTCACTTTATCACCCATTCTGTTCAAGTAACAAGTAACAAGTAACAAGTAACAAGTAACTGATTGCTGTTCGATTAGCTGGAATTAATGTTGTTTTTTTAAAGTGAATTCTTCGGTCTATTCTCCAGATTGCAAAGACTAAGGTTATCAACAGCTGCCTAAACCCTGTCTGGAATGAGGAGTTAACATTCTCCCTTACAGATTCTGTTGGAACTCTCTATTTGGTCAGTCATGTCTCTTTTATTTCTTTGTTTTTTCTCTTCATCTTTCTTTGCCTTAATTTGCTTGATTAAGTTAGCAATTCTTGCGCTTGGAAGTGGTTTTCCCTTCTACACTATACAAACATACTAGATTGCTTACGAATTACAATTGGCGTTAATCTTTGACTATTGACTAGTGACTAGTCCACTTGTTGACTGTAATGATAAGAATGATTCTCAAAGTTTTTTTTTTTGACAAAGAATGATTCTCAAAGTTGTTTTCAAAACAGAAACATCTTTTGCGCTATTCGTAGACTATGGACAATGATGTACAATAAGCAAAAAACATATACTCCGTATGTACAAACAAAAGAATATAACATTGCTACAAAAGAACATGCCATATATTATTTCACTTATTTGTTGTAATAAAATATATTATTTCTTTTTATTAAAAATATAAATAATAAATGTATCTATGTTCTTTTTACTTAAGGTAATGTTTTTTTAGCTATGTACTTGTGTTCTTATGATGCACCATACTTAAGGTGTATAATGGTCCATCTTCTAAATTGCACTTTCCGAATGAAGGGGCGAATAATTTATATACGTTCCTAAACCCAATTTTATAATGCGCACTTAATGAAACATTGTCTTTATTTTAATCTGATTTGGTAGGAAGTATTTGACAAAGATCTAAGTTCTTTATTGTAATGAGATACATGACATATTTGTTAGAATATGTCTTGAAATCGGTTAAGTTACCCTTAGAACAAACCAACACGGGATCTCTATAACATACCCTAATTACAGTCTCTCAATTGAACAACTTTGTACAGAATCTGTTATTTGTTATTTTGGACTAAGGTTATCTGTTTGGGCCTAGTTTTTAGGTCTTTTTCGCATCTGTCTAGAAGTATTGTATAAACTTTTATAGACCACTAAAATTTTCCTGTGCCTGTGGTGCGCGTTACAGACAATATCACTGCAGGATAAATTCTATTCTATATCAGGCTGTTCATATTTTCTAGGTGCATTGTGAATGGTTTGCTATAAAATAAAATGAGCGTAAGGCACGGTAAGCTCCTTACTAAAGTTGGGTTAGGTATTGTTTTTGTATAGGAAGTGTTTGACAAAGACCGTTTCAAGGCAGATGATAAGATGGGATGCGCTCATGTGAATATTCAACCACTTGTATCAGCAGCAAGACTGAAGCAGATCCTGAAGGTTTCTTCAGGAGAGACAACTTTGAGAAAGATGATCCCGGACAGCGATAACTGTCTTGTGAGAGAGAGTTGTATCAATTGTGTGAATGGTGAAATTGTTCAGGAGCTGTGGTTAAGACTTTCTGGGGTTGAATCTGGAGAAATCGAACTGAAACTCAAGTTGGAAAATCCTTATCCAGGTCCCCTCTCCGGCTAGAACTTTGATGTATGGGTTTTTTGTTTTGTTTTGTTTTGTTTGGCTGGTCATAATTGCCAGAGCTAGACACTAGTGTTTGATATGAGTACATGTTTAGGGAGGAAACTGTAACATTAGTAGACAGCTTGTGGTTGTTTGAGTTACAGTTTTAGGTAGACGGGAAATTGGAGGGGTGTTGTAGAAGAAAATGAGCAGAACATGGAGTACATTAGCATGTTTGTGATAGAAGTTTTGACATCACTTGTAATCTTGTATGAAGTTTGGCTATGGTTTCTACGTTACTATATGAAGTTTAAGTTATAGTCTCCTCTTTACCAGGTCACTGA ATGACTTTAGTTTTATTCGGTCCACACAGAAGAAGTGAGTACGAAAGCAAACAAAAAAAAGACTCCAGATCTGGAATGTCGAATCCTACAGCCATTCTGAAAGTAGTGGCGGTGCAAGGCAAGAGGTTGGTTATTAGAGACTTCAAAACCAGTGATCCTTATATCAAATTCAAGCTTGGCGATCAGATTGCAAAGACTAAGGTTATCAACAGCTGCCTAAACCCTGTCTGGAATGAGGAGTTAACATTCTCCCTTACAGATTCTGTTGGAACTCTCTATTTGGAAGTGTTTGACAAAGACCGTTTCAAGGCAGATGATAAGATGGGATGCGCTCATGTGAATATTCAACCACTTGTATCAGCAGCAAGACTGAAGCAGATCCTGAAGGTTTCTTCAGGAGAGACAACTTTGAGAAAGATGATCCCGGACAGCGATAACTGTCTTGTGAGAGAGAGTTGTATCAATTGTGTGAATGGTGAAATTGTTCAGGAGCTGTGGTTAAGACTTTCTGGGGTTGAATCTGGAGAAATCGAACTGAAACTCAAGTTGGAAAATCCTTATCCAGGTCACTGA ATGACTTTAGTTTTATTCGGTCCACACAGAAGAAGTGAGTACGAAAGCAAACAAAAAAAAGACTCCAGATCTGGAATGTCGAATCCTACAGCCATTCTGAAAGTAGTGGCGGTGCAAGGCAAGAGGTTGGTTATTAGAGACTTCAAAACCAGTGATCCTTATATCAAATTCAAGCTTGGCGATCAGATTGCAAAGACTAAGGTTATCAACAGCTGCCTAAACCCTGTCTGGAATGAGGAGTTAACATTCTCCCTTACAGATTCTGTTGGAACTCTCTATTTGGAAGTGTTTGACAAAGACCGTTTCAAGGCAGATGATAAGATGGGATGCGCTCATGTGAATATTCAACCACTTGTATCAGCAGCAAGACTGAAGCAGATCCTGAAGGTTTCTTCAGGAGAGACAACTTTGAGAAAGATGATCCCGGACAGCGATAACTGTCTTGTGAGAGAGAGTTGTATCAATTGTGTGAATGGTGAAATTGTTCAGGAGCTGTGGTTAAGACTTTCTGGGGTTGAATCTGGAGAAATCGAACTGAAACTCAAGTTGGAAAATCCTTATCCAGGTCACTGA MTLVLFGPHRRSEYESKQKKDSRSGMSNPTAILKVVAVQGKRLVIRDFKTSDPYIKFKLGDQIAKTKVINSCLNPVWNEELTFSLTDSVGTLYLEVFDKDRFKADDKMGCAHVNIQPLVSAARLKQILKVSSGETTLRKMIPDSDNCLVRESCINCVNGEIVQELWLRLSGVESGEIELKLKLENPYPGH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08873.1 vs. NCBI nr
Match: gi|902177317|gb|KNA08941.1| (hypothetical protein SOVF_157890 [Spinacia oleracea]) HSP 1 Score: 330.9 bits (847), Expect = 1.500e-87 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 1
BLAST of Spo08873.1 vs. NCBI nr
Match: gi|731350657|ref|XP_010686616.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD13 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 283.5 bits (724), Expect = 2.700e-73 Identity = 138/163 (84.66%), Postives = 149/163 (91.41%), Query Frame = 1
BLAST of Spo08873.1 vs. NCBI nr
Match: gi|225469943|ref|XP_002275013.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD13 [Vitis vinifera]) HSP 1 Score: 263.8 bits (673), Expect = 2.200e-67 Identity = 123/161 (76.40%), Postives = 145/161 (90.06%), Query Frame = 1
BLAST of Spo08873.1 vs. NCBI nr
Match: gi|951038232|ref|XP_014517111.1| (PREDICTED: protein C2-DOMAIN ABA-RELATED 11 [Vigna radiata var. radiata]) HSP 1 Score: 249.2 bits (635), Expect = 5.700e-63 Identity = 120/161 (74.53%), Postives = 138/161 (85.71%), Query Frame = 1
BLAST of Spo08873.1 vs. NCBI nr
Match: gi|920712014|gb|KOM53263.1| (hypothetical protein LR48_Vigan09g192200 [Vigna angularis]) HSP 1 Score: 249.2 bits (635), Expect = 5.700e-63 Identity = 120/161 (74.53%), Postives = 138/161 (85.71%), Query Frame = 1
BLAST of Spo08873.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQV6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157890 PE=4 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 1.000e-87 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 1
BLAST of Spo08873.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BS66_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g184330 PE=4 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 1.900e-73 Identity = 138/163 (84.66%), Postives = 149/163 (91.41%), Query Frame = 1
BLAST of Spo08873.1 vs. UniProtKB/TrEMBL
Match: D7TRX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0531g00030 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 1.600e-67 Identity = 123/161 (76.40%), Postives = 145/161 (90.06%), Query Frame = 1
BLAST of Spo08873.1 vs. UniProtKB/TrEMBL
Match: A0A0L9VE33_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g192200 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 4.000e-63 Identity = 120/161 (74.53%), Postives = 138/161 (85.71%), Query Frame = 1
BLAST of Spo08873.1 vs. UniProtKB/TrEMBL
Match: A0A0S3S453_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G097000 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 4.000e-63 Identity = 120/161 (74.53%), Postives = 138/161 (85.71%), Query Frame = 1
BLAST of Spo08873.1 vs. ExPASy Swiss-Prot
Match: CAR11_ARATH (Protein C2-DOMAIN ABA-RELATED 11 OS=Arabidopsis thaliana GN=CAR11 PE=1 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 1.700e-59 Identity = 107/164 (65.24%), Postives = 136/164 (82.93%), Query Frame = 1
BLAST of Spo08873.1 vs. ExPASy Swiss-Prot
Match: CAR9_ARATH (Protein C2-DOMAIN ABA-RELATED 9 OS=Arabidopsis thaliana GN=CAR9 PE=2 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 2.600e-31 Identity = 69/154 (44.81%), Postives = 95/154 (61.69%), Query Frame = 1
BLAST of Spo08873.1 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 8.300e-30 Identity = 68/160 (42.50%), Postives = 103/160 (64.38%), Query Frame = 1
BLAST of Spo08873.1 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.100e-29 Identity = 67/167 (40.12%), Postives = 104/167 (62.28%), Query Frame = 1
BLAST of Spo08873.1 vs. ExPASy Swiss-Prot
Match: CAR4_ARATH (Protein C2-DOMAIN ABA-RELATED 4 OS=Arabidopsis thaliana GN=CAR4 PE=1 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 2.400e-29 Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = 1
BLAST of Spo08873.1 vs. TAIR (Arabidopsis)
Match: AT5G47710.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 230.3 bits (586), Expect = 9.700e-61 Identity = 107/164 (65.24%), Postives = 136/164 (82.93%), Query Frame = 1
BLAST of Spo08873.1 vs. TAIR (Arabidopsis)
Match: AT1G70790.2 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 136.7 bits (343), Expect = 1.500e-32 Identity = 69/154 (44.81%), Postives = 95/154 (61.69%), Query Frame = 1
BLAST of Spo08873.1 vs. TAIR (Arabidopsis)
Match: AT4G05330.1 (ARF-GAP domain 13) HSP 1 Score: 131.7 bits (330), Expect = 4.700e-31 Identity = 68/160 (42.50%), Postives = 103/160 (64.38%), Query Frame = 1
BLAST of Spo08873.1 vs. TAIR (Arabidopsis)
Match: AT4G21160.1 (Calcium-dependent ARF-type GTPase activating protein family) HSP 1 Score: 131.3 bits (329), Expect = 6.100e-31 Identity = 67/167 (40.12%), Postives = 104/167 (62.28%), Query Frame = 1
BLAST of Spo08873.1 vs. TAIR (Arabidopsis)
Match: AT3G17980.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 130.2 bits (326), Expect = 1.400e-30 Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08873.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08873.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08873.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08873.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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