Spo08878 (gene)

Overview
NameSpo08878
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 10336664 .. 10337480 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTATTTAACTAAAAGATCCCGTAAATTAAAAATGGAGGAAACAAGGCCAGGTAACACTAGGAAGAGGAATACAGCGTGGGTAGAAATCGAAAGGTCAATGCAATTGCAATTTCAATTGAAGAAGAAGATGATGACGCAGAAGAAGAATCTAGAAAAAAGAATATTTGTACGAGTAGTAGAATTATAGAATTAGGAAATGGAAGCCAGGTGGTATATTATCCAAGCATCTTAGATTATAATGAAGCTTGGTAATTATTTGATTACCTCAACAATCAAATTACATGTACTCGCCCAACAATCCGAGTTTTTGGTCACTCGTGCGTCCAGGTAATACATCTTTTACGGATATTTTCATAGTTATTACTTATATCAAGTTATAAATTGATAATGAATTCATGATTGTTTATTTTGATATGAAATCTTAAATATTTCTCTTGGTTTGTGTTTGATTTGTCTTTAATTTGTATAGACTATTACACACTTTTCTAATTCCTTAGTTTATTTTGTTGCGGATCAATGCATTTTTTTTCCTTTTTGGAGGTGAAGAATTGCAGTTGTAGGCTTGTAAACGGTGAACTAGCGAGAAGATTTGGTCTTTTCCGACTTTTTTTTGTTTTATGTAATTTATTTACAATGTTATGTGACTATGTGTATTCCATATATTCTAATTTTAGTAATGAAAAGATCTTGTTATTCGTGTTTTGTAAAGTTAAAGTTACAATTACTTGGAAAGTAATGAAGTTGATTTGTGTTAATATATGGATCTTGTTTATGGTGTGATTGTTACGGCTACGAAGAAACAACAAATCCCA

mRNA sequence

ATGGAGTATTTAACTAAAAGATCCCGTAAATTAAAAATGGAGGAAACAAGGCCAGGTAACACTAGGAAGAGGAATACAGCGTGGGTAGAAATCGAAAGGTCAATGCAATTGCAATTTCAATTGAAGAAGAAGATGATGACGCAGAAGAAGAATCTAGAAAAAAGAATATTTCTTGGTAATTATTTGATTACCTCAACAATCAAATTACATGTACTCGCCCAACAATCCGAGTTTTTGGTCACTCGTGCGTCCAGGTGAAGAATTGCAGTTGTAGGCTTGTAAACGGTGAACTAGCGAGAAGATTTGGTCTTTTCCGACTTTTTTTTGTTTTATGTAATTTATTTACAATGTTATGTGACTATGTGTATTCCATATATTCTAATTTTAGTAATGAAAAGATCTTGTTATTCGTGTTTTGTAAAGTTAAAGTTACAATTACTTGGAAAGTAATGAAGTTGATTTGTGTTAATATATGGATCTTGTTTATGGTGTGATTGTTACGGCTACGAAGAAACAACAAATCCCA

Coding sequence (CDS)

ATGGAGTATTTAACTAAAAGATCCCGTAAATTAAAAATGGAGGAAACAAGGCCAGGTAACACTAGGAAGAGGAATACAGCGTGGGTAGAAATCGAAAGGTCAATGCAATTGCAATTTCAATTGAAGAAGAAGATGATGACGCAGAAGAAGAATCTAGAAAAAAGAATATTTCTTGGTAATTATTTGATTACCTCAACAATCAAATTACATGTACTCGCCCAACAATCCGAGTTTTTGGTCACTCGTGCGTCCAGGTGA

Protein sequence

MEYLTKRSRKLKMEETRPGNTRKRNTAWVEIERSMQLQFQLKKKMMTQKKNLEKRIFLGNYLITSTIKLHVLAQQSEFLVTRASR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08878.1Spo08878.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo08878.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo08878.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo08878.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo08878.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0008618 7-methylguanosine metabolic process
biological_process GO:0006400 tRNA modification
biological_process GO:0008152 metabolic process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0044237 cellular metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006508 proteolysis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006364 rRNA processing
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0001510 RNA methylation
biological_process GO:0051604 protein maturation
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0006457 protein folding
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0016573 histone acetylation
biological_process GO:0009408 response to heat
biological_process GO:0008380 RNA splicing
biological_process GO:0071702 organic substance transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0033036 macromolecule localization
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0009536 plastid
cellular_component GO:0005737 cytoplasm
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
cellular_component GO:0000123 histone acetyltransferase complex
cellular_component GO:0005835 fatty acid synthase complex
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003712 transcription coregulator activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0070008 serine-type exopeptidase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo215010.76Barchart | Table
Spo198590.74Barchart | Table
Spo005010.74Barchart | Table
Spo225430.73Barchart | Table
Spo231270.73Barchart | Table
Spo215310.73Barchart | Table
Spo019700.73Barchart | Table
Spo030570.72Barchart | Table
Spo144080.72Barchart | Table
Spo085330.71Barchart | Table
Spo168920.71Barchart | Table
Spo022210.71Barchart | Table
Spo238980.71Barchart | Table
Spo030270.71Barchart | Table
Spo226660.71Barchart | Table
Spo256150.71Barchart | Table
Spo172880.71Barchart | Table
Spo247870.70Barchart | Table
Spo272910.70Barchart | Table
Spo085990.70Barchart | Table
Spo149830.69Barchart | Table
Spo001780.69Barchart | Table
Spo062870.69Barchart | Table
Spo170810.69Barchart | Table
Spo226540.69Barchart | Table
Spo088790.69Barchart | Table
Spo001550.68Barchart | Table
Spo003910.68Barchart | Table
Spo012010.68Barchart | Table
Spo044530.68Barchart | Table
Spo053590.68Barchart | Table
Spo067890.68Barchart | Table
Spo095620.68Barchart | Table
Spo119280.68Barchart | Table
Spo140130.68Barchart | Table
Spo143100.68Barchart | Table
Spo154010.68Barchart | Table
Spo182960.68Barchart | Table
Spo220540.68Barchart | Table
Spo261950.68Barchart | Table
Spo173670.67Barchart | Table
Spo110730.67Barchart | Table
Spo268570.67Barchart | Table
Spo037080.67Barchart | Table
Spo158410.67Barchart | Table
Spo061370.67Barchart | Table
Spo202950.67Barchart | Table
Spo165630.67Barchart | Table
Spo222840.67Barchart | Table
Spo022710.67Barchart | Table
Spo138350.67Barchart | Table
Spo090270.67Barchart | Table
Spo077680.67Barchart | Table
Spo268030.66Barchart | Table
Spo261450.66Barchart | Table
Spo089800.66Barchart | Table
Spo133870.66Barchart | Table
Spo087830.66Barchart | Table
Spo081060.66Barchart | Table
Spo174900.66Barchart | Table
Spo197760.66Barchart | Table
Spo208890.66Barchart | Table
Spo057330.66Barchart | Table
Spo002630.66Barchart | Table
Spo223260.66Barchart | Table
Spo225250.66Barchart | Table
Spo052300.66Barchart | Table
Spo043770.66Barchart | Table
Spo227150.66Barchart | Table
Spo025790.66Barchart | Table
Spo241530.66Barchart | Table
Spo247860.66Barchart | Table
Spo005540.66Barchart | Table
Spo258460.66Barchart | Table
Spo106240.66Barchart | Table
Spo218240.66Barchart | Table
Spo219390.66Barchart | Table
Spo216460.65Barchart | Table
Spo232830.65Barchart | Table
Spo168730.65Barchart | Table
Spo259130.65Barchart | Table
Spo059680.65Barchart | Table
Spo107020.65Barchart | Table
Spo022420.65Barchart | Table
Spo107050.65Barchart | Table
Spo088490.65Barchart | Table
Spo189420.65Barchart | Table
Spo094930.65Barchart | Table
Spo300250.65Barchart | Table