Spo08924 (gene)

Overview
NameSpo08924
Typegene
OrganismSpinacia oleracea (Spinach)
Description2OG-Fe(II) oxygenase family oxidoreductase
Locationchr5 : 15742214 .. 15745916 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTCCGTAATCTAGAGAAAGAATCAAAAGGGATATTTAAAAATAATTTATATGGTTGAGAAAGTATTTCTTGATGATGCTCTAGTTTAAAAATCACAGAACATAGTGAGATTGCAACAGTATGTTTCCCTTTTCAATTTCTCCTCAATCCCTCAAATCCATTTCACAGTTTTCCAGATTGTTAGATTGGATTTCACTCTGCATTTTTCTCTTTCCGTACCTTGACTCTCTTTTTTATTTATTTAAGGTTTAAACCTTAGCAAGTTTCCATCATTTTAAACCAACTCTGTTGTATGCAATTTCAAGTCTTCGAAAAGTTTGTTGTAGTTGTTTCTTGTTTTTGGAGGGAGGCGATTATTTCCTACTTTCTTATACATGCTATCATTATTTGTTAACTTGTTAGGTTCTGGTTTTGGATCTTCAGTGCCTGGAAGCATGATTCTTAGAAAATTTAAATCATGAGCAGTTGATGCCAAGGTACCCTAGCATGGTTCTTTTCTTAGCAATTGATTTAGTCAATATTTTAGCTGAAAATATATGGATGATGTATAAGTGAGTATTAGTTGAAACTATATGGATGATGTACTAGTGAGCATTAGTCGATACTATATGGATGATGTACTAGTGCGCATTTGTTTTTCAGGAAGTTTTCTCGACATAAATTTATTTTGTATAGAAAAGTCTTGGCTATTCTGAAAATTGGGCAAAGTTTCTGAATAAGCATTAATCTTTAGAGAGAGAACTTGATAGCATTCTTCAGTTCTTCCATATGTAGGTCATATATTTTATTCAGTTGTGAAGTTGATGGCCTTTTACTGATTTCAGACATTTTTATTCAAGCAGGCTTGTATTTGTGCTTTAACGAGCAGAACAAAAGAACTCTTCTTAGGTCACATAGCGAGTGAAAGAAACGCCAGTGAAGGGGGACATGGCGAGTTCTGCTGTCAAAAGTTGAGTATTATTATTTTGTTTATAATAGACTTGTATATTTTAGAAATTATGGTGTTACTCCTTAAAGTTTTGAATATGTTTCTGATACAAAGCTGTAATTGGCAGGTAAATGTCGTTAAAGGTCTGAAGATGTACGAAAAAATATTTACTGATCAAGAGCTTTCTGAATGATTTCGTGGATGAGCTCCCAGTTGCTGGACAAAATGGAGAACTCTTAGGTATTGTTTATACAAACTTCTCTTTTTTCTGCACTCTTACAGTTTTCTACAGAATCATAAAGCAATTACTAAGATCTAATAGTGTCTTTGTTGTGGCTAAATGTGATTTCACCCTTCCAATCTTCTCCTGCCTCTGTAAAAAAACTTGCTTACCTCTATATTGATCACATGTTTCGGATTGTATTATCATTAGCATTGATTTCTGATATCTCTAAAGCCTCTTGTGTGTTCTGATCACGCGTTGTTCCAAAGGTGGTTTGGCAAATAGGTGCTGTCATTAGCGTAACATGTTTTTTTATTTGATATAATATCTTAGCTGCCCCATGATTTCCATTGCTGATAGGATGATCTTGTCCTTAGGAAACTAAACTAAATCTTTAGAAGCCTGAAAGTAGAAATGTTATAGCAGTTTTTTTACTTGTTTGGGTGCTAAGGAGTTCTTTTAAATGCAGGTGAAACATACATTGTGTTCAACAAACAGATGAAGGCTAACTAAAGGGAGCAGATTTAGCTTGGTGTTCCAATATTTGGACAAATAAAAGATGACACAACCCCTCAGCAGCAAAAGAGTAAGAATGAGATTTAATTTACATACATTTTCTTACTAAGTAGCAGTCCTAAACTCTGCATCTAATATCGAACATATACCAGCTTTTCATCATAGCCTTATTGATCATCTCGTTATGTGGCAAGTATTAACAGAGAATAGAAAACCTAATGGTCACATCATAACTTTTTTGATGAGGTAAATTTTCTCAATTTTTTTCGCATATGTTCCAGATACACTGTGGTACACAATGACTGAAATTATATCTCAAAAGAATTGGTCATTGTTCTTAATATATCTGCTTTTTAGGGAGAGTATCTGGGGGAGGTTTAATTTCTTTCATTGTGTCATTTTTAGTCGTAAGACTGAATATTTAACAATAATGTAAATACAATTTTCTTTTTGACGAGTCTGTGACTAGGATAGAATGATCGTAAAGAGAACCTTGACCTTTTGTGGTACTAGATACCAGATAACATGCATATGAGGTGTAAGGAAAAAAATGTTCACGAGGAGTAGAGTTTTCATAGGGGGGAAGGGTGATTTGGCTTTTTAACGTTTCCTCCTTCACTGAACTCCTTAACTGAGAACAAGTTGTAACGTTGCCTCTTATTTATACCCCTTAAACTTTCTTATTGTCTATGGCTTTGGATGTTTGCTCCCTCTTGATAGGTGGGTTCGTGAGGGGATTATTGAAGAGAAACTTGCAACGGACTTGAATTCTTTTCAACTGGAGGTAAATTCTTTTGATTGTTTTCAATGTACTGGGAATTTAATCGTCTATATGCAAAAATACTTTTTGAGGTAAAATTCAAGGGTGCATATCGTCGTACTAATCTCATATCCATCATATGGCTTTGAAATATCTTATAGAACAATGAAAGCCTTCGAGTCGGACAAACAAAGCTTTCACAATTGTCATTTTGTAGCGTGGATCAAGAAATGCAATATTAGAAAACTTTGCAAGTACATATCATCACAGTACTCGTTCAAGACGTTGAGCATTTTACTGTGTCATTAGACTCAAAAATACATTAGAAATGGAAGACTCTAGCTTAGCTTCTTCTTATAGTTCATTAGCACTGAAGTTGGAATTTTTAAGTAATTTCTATTGTTGGGTTGTGGATAAATGCAGTCTGGTTCCTTTCTCTGAACTATTACTACTGCATTATATTTGTTGTGACTTTGTTGATTTAGCTGTCTGGGATTTGTTCTCCTTTTTCTGCTGCGGGGTTGTGTTGTTTAGTTTCGGGTATGTGTAGGTAAAAGGTTGTCTTTTACTTGTTTCCCTTCTTTTCGGCTCTGCTTGGTTCTGCTCAACAACAATGTGTTGAGAGTTATTGGTGGTGTTTTGACTTTTGACTAGTAATAAGGTTGTAGTAGTGTTGCAAAGGTTCTGATTTTGGCTTGAATTTTTAGCGCTTAGGCCCTAGGTACTACTTAGGTTCTGTTGTTTGTTATTTTGTTTAACTTTTTCAGATAGCTTTCTTTTTTCGATGGATGGTTGTTTGTTGTTTGCTTAAGGTTGTAAATCGCTTTTTGGTTATTAGATTGCTTATTTACCAAAAAAATATATTTGACTTATTAAATTTTCTTTGCAGGTTATTTATGATTCAAGTGGTAATAGTATAATGTATATCAAGAGATCAACAAGTTATGTTGAAGCTAAGCTAGCATGGTGATAGGATTTACTCTAAAAAAAGGATTCTAGGAAGTTGTTTTTATTTCAATATATTGTATTTATTTTAGTTTGATTAGAAAATGTAAATTAATGCAGGAATTAATGATTATTATCACCTTTTGTAATTAAATTATTGATAAATATAAATTAGAGTTGTTTTATGAATTTAGAACATTATATTTAAATTTGATTGCACATTCGTTTGTGCTCAATATATATTTTTAGAGATGAATGCATGGTTTTTTATCACTATATTATGAAAAATGGGGGGAAGTTATGTTTGGCGGTGACGCAGCAAACTAC

mRNA sequence

ATGTTTGATGCCAAGGCTTGTATTTGTGCTTTAACGAGCAGAACAAAAGAACTCTTCTTAGGTCACATAGCGAGTGAAAGAAACGCCAGTGAAGGGGGACATGGCGACTTTCTGAATGATTTCGTGGATGAGCTCCCAGTTGCTGGACAAAATGGAGAACTCTTAGGTGAAACATACATTGTGTTCAACAAACAGATGAAGGCTAACTAAAGGGAGCAGATTTAGCTTGGTGTTCCAATATTTGGACAAATAAAAGATGACACAACCCCTCAGCAGCAAAAGAGTGGGTTCGTGAGGGGATTATTGAAGAGAAACTTGCAACGGACTTGAATTCTTTTCAACTGGAGGTTATTTATGATTCAAGTGGTAATAGTATAATGTATATCAAGAGATCAACAAGTTATGTTGAAGCTAAGCTAGCATGGTGATAGGATTTACTCTAAAAAAAGGATTCTAGGAAGTTGTTTTTATTTCAATATATTGTATTTATTTTAGTTTGATTAGAAAATGTAAATTAATGCAGGAATTAATGATTATTATCACCTTTTGTAATTAAATTATTGATAAATATAAATTAGAGTTGTTTTATGAATTTAGAACATTATATTTAAATTTGATTGCACATTCGTTTGTGCTCAATATATATTTTTAGAGATGAATGCATGGTTTTTTATCACTATATTATGAAAAATGGGGGGAAGTTATGTTTGGCGGTGACGCAGCAAACTAC

Coding sequence (CDS)

ATGTTTGATGCCAAGGCTTGTATTTGTGCTTTAACGAGCAGAACAAAAGAACTCTTCTTAGGTCACATAGCGAGTGAAAGAAACGCCAGTGAAGGGGGACATGGCGACTTTCTGAATGATTTCGTGGATGAGCTCCCAGTTGCTGGACAAAATGGAGAACTCTTAGGTGAAACATACATTGTGTTCAACAAACAGATGAAGGCTAACTAA

Protein sequence

MFDAKACICALTSRTKELFLGHIASERNASEGGHGDFLNDFVDELPVAGQNGELLGETYIVFNKQMKAN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08924.1Spo08924.1mRNA


Homology
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BLAST of Spo08924.1 vs. NCBI nr
Match: gi|902180074|gb|KNA09466.1| (hypothetical protein SOVF_153160 [Spinacia oleracea])

HSP 1 Score: 61.6 bits (148), Expect = 6.100e-7
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 1 

		  

Query: 38  LNDFVDELPVAGQNGELLGETYIVFNKQMKAN 70
           +NDFVDEL V+GQNGELLGETY++FNKQMKAN
Sbjct: 240 INDFVDELRVSGQNGELLGETYMLFNKQMKAN 271
[Close]
BLAST of Spo08924.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSE6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_153160 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.300e-7
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 1 

		  

Query: 38  LNDFVDELPVAGQNGELLGETYIVFNKQMKAN 70
           +NDFVDEL V+GQNGELLGETY++FNKQMKAN
Sbjct: 240 INDFVDELRVSGQNGELLGETYMLFNKQMKAN 271
[Close]
BLAST of Spo08924.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B715_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g179400 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.100e-6
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 

		  

Query: 38  LNDFVDELPVAGQNGELLGETYIVFNKQMKAN 70
           LNDFV EL  AGQNGELLG TY++FNKQMKAN
Sbjct: 245 LNDFVHELRAAGQNGELLGGTYVLFNKQMKAN 276
[Close]
BLAST of Spo08924.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2Q6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g146150 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.100e-6
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 

		  

Query: 38 LNDFVDELPVAGQNGELLGETYIVFNKQMKAN 70
          LNDFV EL  AGQNGELLG TY++FNKQMKAN
Sbjct: 23 LNDFVHELRAAGQNGELLGGTYVLFNKQMKAN 54
[Close]
BLAST of Spo08924.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EX45_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g146150 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.100e-6
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 

		  

Query: 38 LNDFVDELPVAGQNGELLGETYIVFNKQMKAN 70
          LNDFV EL  AGQNGELLG TY++FNKQMKAN
Sbjct: 14 LNDFVHELRAAGQNGELLGGTYVLFNKQMKAN 45
The following BLAST results are available for this feature:
BLAST of Spo08924.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902180074|gb|KNA09466.1|6.1e-784.3hypothetical protein SOVF_1531... [more]
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BLAST of Spo08924.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0K9QSE6_SPIOL4.3e-784.3Uncharacterized protein OS=Spi... [more]
A0A0J8B715_BETVU8.1e-681.2Uncharacterized protein OS=Bet... [more]
A0A0J8C2Q6_BETVU8.1e-681.2Uncharacterized protein OS=Bet... [more]
A0A0J8EX45_BETVU8.1e-681.2Uncharacterized protein OS=Bet... [more]
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BLAST of Spo08924.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08924.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo238440.81Barchart | Table