Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTATATTCAAGAGAAGTCTAGAATCTTGCAAGTTGCAATGCGCCAATACTATCTTACCCCAAAACCCAGAAAAACCTATGCTTCCAGAAATGTCTTATTACACCAACTTCAATCTCCTATAATTATAAATAACATCTCAAAACTCCATCTTCTGCAGCTCAATTCACAGAACAATCCTTTCACATTATCCAATTTCATTCCAAGATTTCCAGTTAATTCTCAATTCATCAATTACATGGCTCAATCTCTCTCCTACTTCATTAATAACACACTTCCCTTTTCCAAATCAGCAAACACTTTATTATCCGGGAATTCTTGTTTTCCCCCGAAAATCCCAGAAATTCAGCTAAAAAGAAACAACTTCAATGGAGGAATCAAAGCCATGAAAGCTGATCCAAGGGACAATTCTGACCAAATGTATAAACCTGGGTTAAAGAGGAGAGAACCTTCTGCTGCTCCTATTGGTAATTTCATTTACTCTTTAATTACTTCCTTTTGTTATAATTTACAGCTTATTTGTTGTTCTTGTAATGTTCTTTGTGTTTCTTTATTGCTTAATTTTGATCCAACTTTTTTCCCTCGCAATTACATCATGTGCATTGTGAAATTACTTTTTTTGGGCATTGTGATTTTAAGGCTAATAAAACAGAAAGAAGAGGCAGATAAGTTTGGTCTTCTATATAATGTCATAAACAGGGGAGTGATATTAAAAGTATTTTGTTACCATTTTCAGGGTTATGGGATAGGTTCCCATCTGCAAGAACAGTGCAACAGATGCTAGATACAATGGACAGGATGATGGAGCAACCAGTTGCATACAACAGTAGCTGGCAATCGCAACACCCCAACAATGGAAGCGAGTATGTAAGGGGAAGAACACCATGGGAGATTAAGGAAACAGAGGGTAAAAATAGGCAAGAAAACGGTGTTGTGGAAAGTGAAGGAGACGACTGGTCTGTTAAGAGCTTTGGAAAGTACAGTAGCCGGATTGCATTGCCGGAAAATATCGATTTTGAGAAGATCAAAGCGGAAGTTAAAGATGGTGTGTTGTATATAACGATTCCGAAAGCGAGTAGCATCAGCAAAGTATTTAGTATTAATGTAGAATAGTGGAATCAGATTGTTTTGTTTGGTTAATATGAAATATTCAATGTAGACTGTGTAACTTGAAATGTCGCTGCTTCTCATGAATATATATATTGATGGCTCATCTGATATCTTTGGAAATTGGCTTAATAGAATCTGTTCCTGGTGTGGCTCGAAATATTTTTACATATACATTTATAAATTAGGAATCATCTTACA GTATATTCAAGAGAAGTCTAGAATCTTGCAAGTTGCAATGCGCCAATACTATCTTACCCCAAAACCCAGAAAAACCTATGCTTCCAGAAATGTCTTATTACACCAACTTCAATCTCCTATAATTATAAATAACATCTCAAAACTCCATCTTCTGCAGCTCAATTCACAGAACAATCCTTTCACATTATCCAATTTCATTCCAAGATTTCCAGTTAATTCTCAATTCATCAATTACATGGCTCAATCTCTCTCCTACTTCATTAATAACACACTTCCCTTTTCCAAATCAGCAAACACTTTATTATCCGGGAATTCTTGTTTTCCCCCGAAAATCCCAGAAATTCAGCTAAAAAGAAACAACTTCAATGGAGGAATCAAAGCCATGAAAGCTGATCCAAGGGACAATTCTGACCAAATGTATAAACCTGGGTTAAAGAGGAGAGAACCTTCTGCTGCTCCTATTGGGTTATGGGATAGGTTCCCATCTGCAAGAACAGTGCAACAGATGCTAGATACAATGGACAGGATGATGGAGCAACCAGTTGCATACAACAGTAGCTGGCAATCGCAACACCCCAACAATGGAAGCGAGTATGTAAGGGGAAGAACACCATGGGAGATTAAGGAAACAGAGGGTAAAAATAGGCAAGAAAACGGTGTTGTGGAAAGTGAAGGAGACGACTGGTCTGTTAAGAGCTTTGGAAAGTACAGTAGCCGGATTGCATTGCCGGAAAATATCGATTTTGAGAAGATCAAAGCGGAAGTTAAAGATGGTGTGTTGTATATAACGATTCCGAAAGCGAGTAGCATCAGCAAAGTATTTAGTATTAATGTAGAATAGTGGAATCAGATTGTTTTGTTTGGTTAATATGAAATATTCAATGTAGACTGTGTAACTTGAAATGTCGCTGCTTCTCATGAATATATATATTGATGGCTCATCTGATATCTTTGGAAATTGGCTTAATAGAATCTGTTCCTGGTGTGGCTCGAAATATTTTTACATATACATTTATAAATTAGGAATCATCTTACA ATGCGCCAATACTATCTTACCCCAAAACCCAGAAAAACCTATGCTTCCAGAAATGTCTTATTACACCAACTTCAATCTCCTATAATTATAAATAACATCTCAAAACTCCATCTTCTGCAGCTCAATTCACAGAACAATCCTTTCACATTATCCAATTTCATTCCAAGATTTCCAGTTAATTCTCAATTCATCAATTACATGGCTCAATCTCTCTCCTACTTCATTAATAACACACTTCCCTTTTCCAAATCAGCAAACACTTTATTATCCGGGAATTCTTGTTTTCCCCCGAAAATCCCAGAAATTCAGCTAAAAAGAAACAACTTCAATGGAGGAATCAAAGCCATGAAAGCTGATCCAAGGGACAATTCTGACCAAATGTATAAACCTGGGTTAAAGAGGAGAGAACCTTCTGCTGCTCCTATTGGGTTATGGGATAGGTTCCCATCTGCAAGAACAGTGCAACAGATGCTAGATACAATGGACAGGATGATGGAGCAACCAGTTGCATACAACAGTAGCTGGCAATCGCAACACCCCAACAATGGAAGCGAGTATGTAAGGGGAAGAACACCATGGGAGATTAAGGAAACAGAGGGTAAAAATAGGCAAGAAAACGGTGTTGTGGAAAGTGAAGGAGACGACTGGTCTGTTAAGAGCTTTGGAAAGTACAGTAGCCGGATTGCATTGCCGGAAAATATCGATTTTGAGAAGATCAAAGCGGAAGTTAAAGATGGTGTGTTGTATATAACGATTCCGAAAGCGAGTAGCATCAGCAAAGTATTTAGTATTAATGTAGAATAG MRQYYLTPKPRKTYASRNVLLHQLQSPIIINNISKLHLLQLNSQNNPFTLSNFIPRFPVNSQFINYMAQSLSYFINNTLPFSKSANTLLSGNSCFPPKIPEIQLKRNNFNGGIKAMKADPRDNSDQMYKPGLKRREPSAAPIGLWDRFPSARTVQQMLDTMDRMMEQPVAYNSSWQSQHPNNGSEYVRGRTPWEIKETEGKNRQENGVVESEGDDWSVKSFGKYSSRIALPENIDFEKIKAEVKDGVLYITIPKASSISKVFSINVE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08947.1 vs. NCBI nr
Match: gi|902207960|gb|KNA15811.1| (hypothetical protein SOVF_094820 [Spinacia oleracea]) HSP 1 Score: 406.0 bits (1042), Expect = 5.100e-110 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1
BLAST of Spo08947.1 vs. NCBI nr
Match: gi|225425914|ref|XP_002272065.1| (PREDICTED: small heat shock protein, chloroplastic [Vitis vinifera]) HSP 1 Score: 181.8 bits (460), Expect = 1.600e-42 Identity = 112/236 (47.46%), Postives = 138/236 (58.47%), Query Frame = 1
BLAST of Spo08947.1 vs. NCBI nr
Match: gi|702449791|ref|XP_010025367.1| (PREDICTED: small heat shock protein, chloroplastic-like [Eucalyptus grandis]) HSP 1 Score: 174.9 bits (442), Expect = 1.900e-40 Identity = 94/197 (47.72%), Postives = 120/197 (60.91%), Query Frame = 1
BLAST of Spo08947.1 vs. NCBI nr
Match: gi|802723982|ref|XP_012085582.1| (PREDICTED: small heat shock protein, chloroplastic-like isoform X2 [Jatropha curcas]) HSP 1 Score: 174.5 bits (441), Expect = 2.500e-40 Identity = 109/239 (45.61%), Postives = 136/239 (56.90%), Query Frame = 1
BLAST of Spo08947.1 vs. NCBI nr
Match: gi|565349567|ref|XP_006341764.1| (PREDICTED: small heat shock protein, chloroplastic-like [Solanum tuberosum]) HSP 1 Score: 174.1 bits (440), Expect = 3.300e-40 Identity = 109/235 (46.38%), Postives = 133/235 (56.60%), Query Frame = 1
BLAST of Spo08947.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8J6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_094820 PE=3 SV=1) HSP 1 Score: 406.0 bits (1042), Expect = 3.600e-110 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1
BLAST of Spo08947.1 vs. UniProtKB/TrEMBL
Match: A5B868_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036834 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.100e-42 Identity = 112/236 (47.46%), Postives = 138/236 (58.47%), Query Frame = 1
BLAST of Spo08947.1 vs. UniProtKB/TrEMBL
Match: A0A059B725_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04692 PE=3 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.300e-40 Identity = 94/197 (47.72%), Postives = 120/197 (60.91%), Query Frame = 1
BLAST of Spo08947.1 vs. UniProtKB/TrEMBL
Match: M1AVE4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011977 PE=3 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 2.300e-40 Identity = 109/235 (46.38%), Postives = 133/235 (56.60%), Query Frame = 1
BLAST of Spo08947.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KTF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591720 PE=3 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 2.500e-39 Identity = 100/221 (45.25%), Postives = 126/221 (57.01%), Query Frame = 1
BLAST of Spo08947.1 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 5.600e-16 Identity = 69/227 (30.40%), Postives = 101/227 (44.49%), Query Frame = 1
BLAST of Spo08947.1 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.300e-14 Identity = 62/211 (29.38%), Postives = 100/211 (47.39%), Query Frame = 1
BLAST of Spo08947.1 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.200e-11 Identity = 47/154 (30.52%), Postives = 77/154 (50.00%), Query Frame = 1
BLAST of Spo08947.1 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.100e-8 Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1
BLAST of Spo08947.1 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.100e-6 Identity = 37/124 (29.84%), Postives = 64/124 (51.61%), Query Frame = 1
BLAST of Spo08947.1 vs. TAIR (Arabidopsis)
Match: AT4G27670.1 (heat shock protein 21) HSP 1 Score: 86.3 bits (212), Expect = 3.200e-17 Identity = 69/227 (30.40%), Postives = 101/227 (44.49%), Query Frame = 1
BLAST of Spo08947.1 vs. TAIR (Arabidopsis)
Match: AT1G52560.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 49.7 bits (117), Expect = 3.300e-6 Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
BLAST of Spo08947.1 vs. TAIR (Arabidopsis)
Match: AT4G25200.1 (mitochondrion-localized small heat shock protein 23.6) HSP 1 Score: 48.9 bits (115), Expect = 5.600e-6 Identity = 47/173 (27.17%), Postives = 74/173 (42.77%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08947.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08947.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08947.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08947.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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