Spo08988 (gene)

Overview
NameSpo08988
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02937 : 8800 .. 11443 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTGGTTAGTCGGACTTCAGATGAGCTCAACTCTTTGGTGTTGTCAAAGGAAATAGCCTTAAAAATATACTCTGTTGCTGGGGAAAGACCGGAGACTATGAACCTTGTTTGTGGAGGAAACAATGTACAGGTCGGCTGTTCTGGTTTTTTCCGGTCACCAACCTTACGATGCCACAATGTATAACCCACATTCTTCTCAGATAAAGAAGAATTATCAGGGCCCAAGATCACAGTGACTGCTGTTGCATTAATGGATTCAACTCTGATGATACTTGGAGCAATTGTTCTTGAAACTGCTACGTTATTGCCTGTTATGAAATGTATTATTTAGGCTATATTCTGTTCACTTTATTTCCACTATATTTCAGGAAAATTAAGTTCAGATAAGATAAGTTCAGGAAAAATAAGGGTTGACCAAATACAATTTATAGCTAAATTAAGTTCAGAAAAAATAAGTGAAAATCATTACAATAGAACGCACTCTTAGTCACCAGAACTCAACCCCAGATAAGCTCAAGAAATCACATTATCTCCATGTTCCCACCCACCAAAATCATTAATAAGCCTTACACCGTACAACATAACCCTAAGCTTTAGAGTATGTTCCCAAAACAACCGTAACATATTGGAAATTCAAAGAACAACCTGAAGTGTCAAAATCCCTCTTAAAAGGTATCTTATTTGTAACAAAATCATAATAAAAATACTGTGGAAGAGATTTTAGTACAGAAGGTATTTGGAAACTGGAAATGCTCACAGGGTTGATTTCGGAAAACACCCAAGTTAAAGTTATTTTGTATGATAGCCCAAACAGTAGGGGGGTGGGGGGGATTAAAACTAAAAAACATAGAAATCATACAAATTGATAATACAGGCAAATTTATTGGATTACCTAAGTGCAATGGCGTTTGATGATACGTTGATTCAAACAACTCAAGGGCAGAAGCACATAGTCTTTGAACTTCTTGACCAGACGATAGTCGGTTAACAATTCCTCTACCCATCTTAACAGGAACACCAGTTAAGGCACCTACTTCTGCTGCAAGTAGTTTTATGGCATCATCAACAATATCACAAGCCTTAAGGTATTTCTTTGTTCCGGCCAATAGCTTCTGGCTCAGGGAGATACGATAACATAATATGTCCACCCGTCTAGTGTCCTTCGCAATTATTAATTGTTTCCTCCAACAGCTAGATACAACAACAATGAGACACTTCAACTTCCAGGGACAATTCGGTTGGAAAATAACAATGAAAAGAAATCAACAATTAAAACAAATCTAATACACTCTAATTGAATATTATTGCTCTAGAGAAATCTATGATTATAAATGTATTTTGGGATGATTAGTTATTTTTATCTCCTGGCCAACTCTACATTTGATTCTTTTGAGCTGTTAAGTATTTTACATGAGCTCAACTATCAACGCATGAAGGGCTACTGAGACACAAGAACAACAAAGCGAATTCTTTCCTTTCTATGGAGATCTTTCAAAGAATGTTATCCAAATCTTAATAACAAATGAGTAAACACATAGAATTTACAGCACTTATCCACATAACTAGTAGCAGTTCCGTTGGAAATATTATCAAGAATGTGACTGGATGAATCCATGAAGCTTTTAGGTTTTACTCCAATCATGAAATCCTAAAATCTTGGTTCCAAACTTAAACATTGAGGTAATCACAATATAGGAACTTCAGTGTCCAGGTGATCTCAGAGGAGCATCAAAAAGATCTCAAATCATCAGAGCTTACTGCAGGCATAAAAACAAGAATTCCAACTTCACGAGCGCATTTAGCAAAATGATGCATTGAATATTTTCATGCTAGAGTAGCCAGCAAAGTTTCTCTTTTCAAGAATGGGATGGAAGTACTAAGACAACCTAATACTGCAAGTTGGTAGCAAGTGTGCATCATTTGAGCACAAGAGTCGCATATGTTGGACACTTAGGCTCCGTTTGGTTGGGTGTAAAACATTTTCGGTGTAAAATGATTTTCATGGAAAACAATTTACAATGGAAAGCACAATTCCAAAAGTAGTTTTCCGTTGCTTGGTTCCATGTAAGAAAAATGATGAAACGAAAGGAAAATGAAAGGGAAAGTAAGCAGATAGTCAGAGGAGTGTACAAGAGAGATAAAAAAAGGAAGGAAACCCGTTTTCCCTTCATTTTGAAGGGAAAAAGGTTTTTCTTCATTGGGAGACAATTTTACTTTTCCATCATTGGGAGAGCAATTTTACTCATAGGGAAAATGGTTTTACACTCCTTTGCAAAACCAAACAATGTAAAATTGGAAGTAGAGGAAAACTGTTTTCCAGGAAAATGTTTTACGCCTTACCAAACGGAGCCTTAAGAAAAGAGTGCATGTAATCCTATTTCAGTTGTTAGTATAATCTTTCTTCTATTATAAATAATAATAAATACATTTTTTGAGATGGTGCTTAAAAGTTAAAACAAAAGAGACTATAGCCGTAAGGTGTGATATCCTGAAGGTTATGGGCTATGGCAGTTGCAATAGTTCTTGCCAACATCTCAAGTTGCTGTTTACCAAGCTACTCTACAGATTACCAACCATCTCAATCTGACAATCCCTTTGTGGGTGGCATGCTACTGAAACACAAGCTCATTCCTTCATAA

mRNA sequence

ATGTTTGTGGTTAGTCGGACTTCAGATGAGCTCAACTCTTTGGTGTTGTCAAAGGAAATAGCCTTAAAAATATACTCTGTTGCTGGGGAAAGACCGGAGACTATGAACCTTGTTTGTGGAGGAAACAATGTACAGGTCGGCTGTTCTGGAACACCAGTTAAGGCACCTACTTCTGCTGCAAGTAGTTTTATGGCATCATCAACAATATCACAAGCCTTAAGGTTATGGGCTATGGCAGTTGCAATAGTTCTTGCCAACATCTCAAGTTGCTGTTTACCAAGCTACTCTACAGATTACCAACCATCTCAATCTGACAATCCCTTTGTGGGTGGCATGCTACTGAAACACAAGCTCATTCCTTCATAA

Coding sequence (CDS)

ATGTTTGTGGTTAGTCGGACTTCAGATGAGCTCAACTCTTTGGTGTTGTCAAAGGAAATAGCCTTAAAAATATACTCTGTTGCTGGGGAAAGACCGGAGACTATGAACCTTGTTTGTGGAGGAAACAATGTACAGGTCGGCTGTTCTGGAACACCAGTTAAGGCACCTACTTCTGCTGCAAGTAGTTTTATGGCATCATCAACAATATCACAAGCCTTAAGGTTATGGGCTATGGCAGTTGCAATAGTTCTTGCCAACATCTCAAGTTGCTGTTTACCAAGCTACTCTACAGATTACCAACCATCTCAATCTGACAATCCCTTTGTGGGTGGCATGCTACTGAAACACAAGCTCATTCCTTCATAA

Protein sequence

MFVVSRTSDELNSLVLSKEIALKIYSVAGERPETMNLVCGGNNVQVGCSGTPVKAPTSAASSFMASSTISQALRLWAMAVAIVLANISSCCLPSYSTDYQPSQSDNPFVGGMLLKHKLIPS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08988.1Spo08988.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo08988.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08988.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08988.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08988.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
molecular_function GO:0005515 protein binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
RNA-Seq Expression