Spo09202 (gene)

Overview
NameSpo09202
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_27283 : 347 .. 1238 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCACCCTCTTCTCTCCCATGGTGTTGGTACCAAAAACAATTCTCTTTCTTTTATCTTTCTCTGGGTTTGATTTCAATTTTATTTGCACAAATCGATTTCCGCAAATACTCTAATTTGCTGATTCAAATGACTTTGAGAGAGCTTGAGGCGTAAGATTAGGGTTTCAAAATGAGATGGATCGGGGCTCGCATTCATTTGACTTGGACGGCGTTGAGGAAGGTTCGTGTTTCTCATTCAAGGTTTGGTTTGTTTTTCTTTTTCAATCTTTTGCATCTACTTATTGATTTTTGTTTCATTTTTTAGGGTTTATCAGTTCGAGCATCAATGACGCCTACTGCTAAAGGTATTTCTTCCATTTTTCACTTGAATGTATTCATTTATTTTGAAGTTTTTGTACGATTTATTTCTGGTTTCTAAAATTTTTGTGTGGAAAATCAGGATTATCGTTTCGGTGTATTTAAATTGTAATGCCATTGTTGATTCTTTCAAATCCATGTTTTACCTGCAATTATCTGTTTGTAATTGTTCTATTGAACCATTAATTGACTATTAATTATGCGGACAAAAGTTTATTGTTCTTGGCTTTATGTTTGCTGAATGTAATCACTTTTGTTGTTGGTTGATATTAAAGACATGACATTTTGTATGTCGCCCAGATATGTTCGAAACATCGCATTGCTTGTCCCACCCTTACATTCCTTCTAAAAAATTAACAGCGGAATTACCGCCCCACCCTCTCCCACATTTCTGCCTGCCTCCTTCTCAACCCAATTTCTTCACTTCCTTTCAGTTCTTTCATCTCCTTCCTCCCCGTGACCCATTTTCTTTCTCTCTCTTCAGTTTGGTTTGGTATCTTCAATGGACAGAGACAATAATCAAACTCTTTCAA

mRNA sequence

CCTCCACCCTCTTCTCTCCCATGGTGTTGGTACCAAAAACAATTCTCTTTCTTTTATCTTTCTCTGGGTTTGATTTCAATTTTATTTGCACAAATCGATTTCCGCAAATACTCTAATTTGCTGATTCAAATGACTTTGAGAGAGCTTGAGGCGTAAGATTAGGGTTTCAAAATGAGATGGATCGGGGCTCGCATTCATTTGACTTGGACGGCGTTGAGGAAGGGTTTATCAGTTCGAGCATCAATGACGCCTACTGCTAAAGATATGTTCGAAACATCGCATTGCTTGTCCCACCCTTACATTCCTTCTAAAAAATTAACAGCGGAATTACCGCCCCACCCTCTCCCACATTTCTGCCTGCCTCCTTCTCAACCCAATTTCTTCACTTCCTTTCAGTTCTTTCATCTCCTTCCTCCCCGTGACCCATTTTCTTTCTCTCTCTTCAGTTTGGTTTGGTATCTTCAATGGACAGAGACAATAATCAAACTCTTTCAA

Coding sequence (CDS)

ATGAGATGGATCGGGGCTCGCATTCATTTGACTTGGACGGCGTTGAGGAAGGGTTTATCAGTTCGAGCATCAATGACGCCTACTGCTAAAGATATGTTCGAAACATCGCATTGCTTGTCCCACCCTTACATTCCTTCTAAAAAATTAACAGCGGAATTACCGCCCCACCCTCTCCCACATTTCTGCCTGCCTCCTTCTCAACCCAATTTCTTCACTTCCTTTCAGTTCTTTCATCTCCTTCCTCCCCGTGACCCATTTTCTTTCTCTCTCTTCAGTTTGGTTTGGTATCTTCAATGGACAGAGACAATAATCAAACTCTTTCAA

Protein sequence

MRWIGARIHLTWTALRKGLSVRASMTPTAKDMFETSHCLSHPYIPSKKLTAELPPHPLPHFCLPPSQPNFFTSFQFFHLLPPRDPFSFSLFSLVWYLQWTETIIKLFQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo09202.1Spo09202.1mRNA


Homology
[Close]
BLAST of Spo09202.1 vs. NCBI nr
Match: gi|902233951|gb|KNA23266.1| (hypothetical protein SOVF_026480 isoform A, partial [Spinacia oleracea])

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-6
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 

		  

Query: 1  MRWIGARIHLTWTALRKGLSVRASMTPTAK 31
          MRWIGARIHLTWTA RKGLS+RASM PTAK
Sbjct: 1  MRWIGARIHLTWTAFRKGLSIRASMAPTAK 30
[Close]
BLAST of Spo09202.1 vs. NCBI nr
Match: gi|902233952|gb|KNA23267.1| (hypothetical protein SOVF_026480 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-6
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 

		  

Query: 1  MRWIGARIHLTWTALRKGLSVRASMTPTAK 31
          MRWIGARIHLTWTA RKGLS+RASM PTAK
Sbjct: 1  MRWIGARIHLTWTAFRKGLSIRASMAPTAK 30
[Close]
BLAST of Spo09202.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUQ8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_026480 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-6
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 

		  

Query: 1  MRWIGARIHLTWTALRKGLSVRASMTPTAK 31
          MRWIGARIHLTWTA RKGLS+RASM PTAK
Sbjct: 1  MRWIGARIHLTWTAFRKGLSIRASMAPTAK 30
[Close]
BLAST of Spo09202.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWP8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_026480 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-6
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 

		  

Query: 1  MRWIGARIHLTWTALRKGLSVRASMTPTAK 31
          MRWIGARIHLTWTA RKGLS+RASM PTAK
Sbjct: 1  MRWIGARIHLTWTAFRKGLSIRASMAPTAK 30
The following BLAST results are available for this feature:
BLAST of Spo09202.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902233951|gb|KNA23266.1|1.6e-690.0hypothetical protein SOVF_0264... [more]
gi|902233952|gb|KNA23267.1|1.6e-690.0hypothetical protein SOVF_0264... [more]
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BLAST of Spo09202.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RUQ8_SPIOL1.1e-690.0Uncharacterized protein (Fragm... [more]
A0A0K9RWP8_SPIOL1.1e-690.0Uncharacterized protein (Fragm... [more]
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BLAST of Spo09202.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo09202.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050896 response to stimulus
biological_process GO:0015979 photosynthesis
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0044425 membrane part
cellular_component GO:0009523 photosystem II
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0016746 transferase activity, transferring acyl groups
molecular_function GO:0003743 translation initiation factor activity
RNA-Seq Expression