

|
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATTTAAGCATCGGTAACACCGCCACAAATTCATCTAATTTCCCTGCAATTTTCCAAAACCCATCTTTTTTACCCAGAAATAATTCATCAATAACCCCTAAAATTCTCTCAAATAGTCACCCAAAAACTCTAATAATAACGGCTTCTTCAAATAGCAGCAGCAACAATAATCAAAACACACCCACAAACAGCAGCAGAGATCATCGGTGGTCTCTTAGTGGGATGACGGCTTTAGTCACCGGCGGCACTCGTGGAATTGGGTTTGTCACTCTCTCTAATTCCATTCTGGTTTTTGGTACTGAAATTGCAATGCATGAAAAATTGTTTTTTTTTTTTTGTGAATTTTGGCATTTTTCTTATGCTTGAATTTTTCTGGGACTATGTCTAGGCTTGCAATTGTGGAGGAATTGTTGGGTTTTGGAGCAATTGTGCATACTTGTGCTAGAAATGAAGTTGAGCTTGATAATTGCTTGAAAAGTTGGGAAAATCAAGGGTTTAATGTTAGTGGGTCAGTTTGTGATGTGTCTTCTTGGGAGCAACGAGAGAAGCTTCTGGATACTGTTTCATCTGTTTTTTATGGCAAGCTTAACATTCTTGTAAGTAATGTTTTACCCTTGATTTTATTGTTGCTTTTTTTTGGTATGTCTGGTAAAATTTGTAGTATTCTATATGTGATGATAGTTCATAGCAATGTTTAAGGGTTTAGTTACTTGGAATTGTGTTGTGTTGTGTTGGATGATTTTGATTTGTTTTATATTCTTATGCCATGTGATATAGATAGGGTAATGTTTGCATATATTTCTGGTCGAAGATGTGTCGAGAATTGTATTGAATTAGAACTATTGAAGCACTCTTAGATGAAGATCGATGAGGTGTGGAAGAATTATGCTAGTAATTTGATATCTAAGTAATTTTATCTTTGTCATAACGAGGTTGATCACAGACATTGAAGGACATTTGTCGAAACTTCATTCTTGCTTCATCTTTTAGCTGGGGTTTTCCATTATTCATAGAGTTCAGTGTTTGTTACAAGATGCACTCAAAGATGAACTAAATGAGTAATTATCTCAGCAGGAGAAAATTTTCTAGTTACTGCTAACTGAAATCTTATTTCTAAACTACCCATCTACTATAGGTTGGCAGCATTAGCAAATGTAGACAAATATTAATCTTCTTCCTAATTAGCTTCTACGCAAATCACATTATACCAAGCTAACAACCTACTTCTGTATACTCGACCTATTACTCAAGTGATGTGGAATAAGCTAACTGACTAAGTTTCTGTGGAAGCTGCCTGTGATGAGCCGAGTGCAGTGACTTCACAGTTATCAGAGATTGTTACGGAGTATTTCAAATTGTTTATACTTTATACTGAACTGAACTTATTTTTGCTAAACTAACTTAATTTCTGATAAATTAGAGCTTATTTTTCGTGAAACCTACCCTTTGGAGTATGCCAAGGTCCAAATAAGAAATTGGAAAGAAAAAGAATTTTCTTTTCATACTTTAGAATGTCCATTTCCGATGGAGCCAAAGATTCATTTGTTCTTTTGGCTGTGGGATGTAATGTACTAAATCAAAATGGCTCTTAATACCTTTGCTCTTCCTTTCCATGAAGTAGAAGATGGTCGTCCTGTTGTTGTCCCGTTATGCTTTTGGGTCAATTGGAAACAACCTCTCTGCAATTGCAGGGGTAAGGTTGCGTACGTCCGACCCCCCCTTACCCTGCTTCTTGCGGGAGCCTCTTTGAGGCAATGGGGTAATGATAATGATGACTGTAGACGGGACAGATAGGCCAGGAGCATAGAGAGTGACGTAGTGACTTGTGAGTGAACCTTGGTGACATTCTTACCTCACATCTATATCAAGTAGTTCGCTTGGTGAATGTATCTCAAGTTTTTCCTGCTTTTTGTAACTCCCTCTGTGCATTATCAGTTGTCACATTTTTTTACTTTTCTTTACGTTTGTAGGTTTATTTCCAAGATTCTATTATTATTTAATACTACTAGGCTACTAGCATAGGAAAGTGTTGTGCTTTCGTCCTATCTATGAGATTGTTTTGTCACTGAATGATTGAGTGATCAATGTTCTGTTATAACAAAAAATATTTGCATTGTCATTCTTTTTCCTTTTTCTAATTTGCCTGCCTTGCAGTTGACTCTGAAAATAGTTTAGTTCTGATTACTTGGGTTTGCAGGTCAATAATGTTGGGACAAATATACGGAAACCAATTGTTCACTTCACTCCACAAGAATATTCGACACTGATGACTACAAATTTTGAGTCTGTTTTCCATTTAAGCCAGCTGGGTCATCCTCTCCTAAAAGCTTCTGGCTGTGGAAGTATTGTGTTTGTTTCTTCTGTTTCTGGTTTTGTTTCCCTGAAATCGATGTCTCTTCAAGGAGCAACTAAAGGTGAGCAAATGATTAGTGTTGGTTTGTTTTAACTATTTCTATGTGAATAATTATGCACAATAACTAAGTTTCTGCGTTTAAACTGGTTTGGTTTGCAGGAGCAATTAATCAACTGACTCGAAGTTTGGCATGTGAATGGGCAAAAGACAATATTAGGAGCAATGCTGTTGCGCCTTGGTACATCAAAACCACTATGGTAGAAAAGGTAGTTATAACTTTCTTGGTTAGTGTGTATACTCCCTTGCTTCTCTCGGGATCCTTGATTATTCAGTGAGCCTCAGTCAGAGGGACTTAAACCTTGTATTGATAATGGTGATGTCATTGTCTACCTAGTGTTAACGTTAGTTTGTTTCACCATGCTTAAAGTTGAAATGCAAATGTATAGTTTTTCCGAATAGAAATCAAATCCATTGAACTTCTATTGAATATGTTTTAAATGAACCATATTTATATTTTCCTAGATGTCTTTCATATTTAAGTCTTGAGAATATATCTGTATATCTGCTTTCCTCTTTGCATTTCTGTAAAATGCTGAGCAAGGCTTCTGTAAAATGCTGAGCAAGGCTTGTGTTACAAAATATCAAATTTTCACTGCAATGTTTTGACCTACAACTAGTGGGCGACAGTTGGATTAAGAGGATTAGGCAGCTATTTAGTTGTATAGGATTCTTTTAAGTTTTAACAGTTGCTTCTGCTTTAAATTTTCAGGTTTTAAGCAATGAAGATTATCTAGAGGAAGTTTATTCTCGTACACCACTTTGTCGTCTTGGAGACCCAGCAGAAGTCTCTTCTCTGGTTGCATTCCTTTGCCTCCCTGCATCTGCTTACATTACTGGTCAAATTATTTGTGTTGATGGCGGAATGTCCGTCAATGGTTTCTATCCCAAAATGGATTTTCAATAGATGAATTTAAGCATCGGTAACACCGCCACAAATTCATCTAATTTCCCTGCAATTTTCCAAAACCCATCTTTTTTACCCAGAAATAATTCATCAATAACCCCTAAAATTCTCTCAAATAGTCACCCAAAAACTCTAATAATAACGGCTTCTTCAAATAGCAGCAGCAACAATAATCAAAACACACCCACAAACAGCAGCAGAGATCATCGGTGGTCTCTTAGTGGGATGACGGCTTTAGTCACCGGCGGCACTCGTGGAATTGGGCTTGCAATTGTGGAGGAATTGTTGGGTTTTGGAGCAATTGTGCATACTTGTGCTAGAAATGAAGTTGAGCTTGATAATTGCTTGAAAAGTTGGGAAAATCAAGGGTTTAATGTTAGTGGGTCAGTTTGTGATGTGTCTTCTTGGGAGCAACGAGAGAAGCTTCTGGATACTGTTTCATCTGTTTTTTATGGCAAGCTTAACATTCTTGTCAATAATGTTGGGACAAATATACGGAAACCAATTGTTCACTTCACTCCACAAGAATATTCGACACTGATGACTACAAATTTTGAGTCTGTTTTCCATTTAAGCCAGCTGGGTCATCCTCTCCTAAAAGCTTCTGGCTGTGGAAGTATTGTGTTTGTTTCTTCTGTTTCTGGTTTTGTTTCCCTGAAATCGATGTCTCTTCAAGGAGCAACTAAAGGAGCAATTAATCAACTGACTCGAAGTTTGGCATGTGAATGGGCAAAAGACAATATTAGGAGCAATGCTGTTGCGCCTTGGTACATCAAAACCACTATGGTAGAAAAGGTTTTAAGCAATGAAGATTATCTAGAGGAAGTTTATTCTCGTACACCACTTTGTCGTCTTGGAGACCCAGCAGAAGTCTCTTCTCTGGTTGCATTCCTTTGCCTCCCTGCATCTGCTTACATTACTGGTCAAATTATTTGTGTTGATGGCGGAATGTCCGTCAATGGTTTCTATCCCAAAATGGATTTTCAATAG ATGAATTTAAGCATCGGTAACACCGCCACAAATTCATCTAATTTCCCTGCAATTTTCCAAAACCCATCTTTTTTACCCAGAAATAATTCATCAATAACCCCTAAAATTCTCTCAAATAGTCACCCAAAAACTCTAATAATAACGGCTTCTTCAAATAGCAGCAGCAACAATAATCAAAACACACCCACAAACAGCAGCAGAGATCATCGGTGGTCTCTTAGTGGGATGACGGCTTTAGTCACCGGCGGCACTCGTGGAATTGGGCTTGCAATTGTGGAGGAATTGTTGGGTTTTGGAGCAATTGTGCATACTTGTGCTAGAAATGAAGTTGAGCTTGATAATTGCTTGAAAAGTTGGGAAAATCAAGGGTTTAATGTTAGTGGGTCAGTTTGTGATGTGTCTTCTTGGGAGCAACGAGAGAAGCTTCTGGATACTGTTTCATCTGTTTTTTATGGCAAGCTTAACATTCTTGTCAATAATGTTGGGACAAATATACGGAAACCAATTGTTCACTTCACTCCACAAGAATATTCGACACTGATGACTACAAATTTTGAGTCTGTTTTCCATTTAAGCCAGCTGGGTCATCCTCTCCTAAAAGCTTCTGGCTGTGGAAGTATTGTGTTTGTTTCTTCTGTTTCTGGTTTTGTTTCCCTGAAATCGATGTCTCTTCAAGGAGCAACTAAAGGAGCAATTAATCAACTGACTCGAAGTTTGGCATGTGAATGGGCAAAAGACAATATTAGGAGCAATGCTGTTGCGCCTTGGTACATCAAAACCACTATGGTAGAAAAGGTTTTAAGCAATGAAGATTATCTAGAGGAAGTTTATTCTCGTACACCACTTTGTCGTCTTGGAGACCCAGCAGAAGTCTCTTCTCTGGTTGCATTCCTTTGCCTCCCTGCATCTGCTTACATTACTGGTCAAATTATTTGTGTTGATGGCGGAATGTCCGTCAATGGTTTCTATCCCAAAATGGATTTTCAATAG MNLSIGNTATNSSNFPAIFQNPSFLPRNNSSITPKILSNSHPKTLIITASSNSSSNNNQNTPTNSSRDHRWSLSGMTALVTGGTRGIGLAIVEELLGFGAIVHTCARNEVELDNCLKSWENQGFNVSGSVCDVSSWEQREKLLDTVSSVFYGKLNILVNNVGTNIRKPIVHFTPQEYSTLMTTNFESVFHLSQLGHPLLKASGCGSIVFVSSVSGFVSLKSMSLQGATKGAINQLTRSLACEWAKDNIRSNAVAPWYIKTTMVEKVLSNEDYLEEVYSRTPLCRLGDPAEVSSLVAFLCLPASAYITGQIICVDGGMSVNGFYPKMDFQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09220.1 vs. NCBI nr
Match: gi|902225277|gb|KNA20012.1| (hypothetical protein SOVF_056240 isoform A [Spinacia oleracea]) HSP 1 Score: 642.1 bits (1655), Expect = 5.200e-181 Identity = 326/328 (99.39%), Postives = 326/328 (99.39%), Query Frame = 1
BLAST of Spo09220.1 vs. NCBI nr
Match: gi|731348831|ref|XP_010685687.1| (PREDICTED: tropinone reductase homolog At1g07440 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 520.4 bits (1339), Expect = 2.300e-144 Identity = 272/329 (82.67%), Postives = 292/329 (88.75%), Query Frame = 1
BLAST of Spo09220.1 vs. NCBI nr
Match: gi|731348829|ref|XP_010685686.1| (PREDICTED: tropinone reductase homolog At1g07440 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 520.4 bits (1339), Expect = 2.300e-144 Identity = 272/329 (82.67%), Postives = 292/329 (88.75%), Query Frame = 1
BLAST of Spo09220.1 vs. NCBI nr
Match: gi|902225278|gb|KNA20013.1| (hypothetical protein SOVF_056240 isoform B [Spinacia oleracea]) HSP 1 Score: 503.8 bits (1296), Expect = 2.200e-139 Identity = 251/253 (99.21%), Postives = 251/253 (99.21%), Query Frame = 1
BLAST of Spo09220.1 vs. NCBI nr
Match: gi|147779047|emb|CAN69103.1| (hypothetical protein VITISV_027298 [Vitis vinifera]) HSP 1 Score: 421.4 bits (1082), Expect = 1.500e-114 Identity = 210/267 (78.65%), Postives = 233/267 (87.27%), Query Frame = 1
BLAST of Spo09220.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMC6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056240 PE=4 SV=1) HSP 1 Score: 642.1 bits (1655), Expect = 3.700e-181 Identity = 326/328 (99.39%), Postives = 326/328 (99.39%), Query Frame = 1
BLAST of Spo09220.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKI9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056240 PE=4 SV=1) HSP 1 Score: 503.8 bits (1296), Expect = 1.600e-139 Identity = 251/253 (99.21%), Postives = 251/253 (99.21%), Query Frame = 1
BLAST of Spo09220.1 vs. UniProtKB/TrEMBL
Match: A5AJK7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027298 PE=4 SV=1) HSP 1 Score: 421.4 bits (1082), Expect = 1.000e-114 Identity = 210/267 (78.65%), Postives = 233/267 (87.27%), Query Frame = 1
BLAST of Spo09220.1 vs. UniProtKB/TrEMBL
Match: I1LJY0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G135700 PE=4 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 2.500e-113 Identity = 214/293 (73.04%), Postives = 243/293 (82.94%), Query Frame = 1
BLAST of Spo09220.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QKF1_GLYSO (Tropinone reductase like OS=Glycine soja GN=glysoja_008832 PE=4 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 2.500e-113 Identity = 214/293 (73.04%), Postives = 243/293 (82.94%), Query Frame = 1
BLAST of Spo09220.1 vs. ExPASy Swiss-Prot
Match: TRNH5_ARATH (Tropinone reductase homolog At2g29260, chloroplastic OS=Arabidopsis thaliana GN=At2g29260 PE=2 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 1.400e-112 Identity = 200/258 (77.52%), Postives = 227/258 (87.98%), Query Frame = 1
BLAST of Spo09220.1 vs. ExPASy Swiss-Prot
Match: TRNHF_ARATH (Tropinone reductase homolog At5g06060 OS=Arabidopsis thaliana GN=At5g06060 PE=2 SV=1) HSP 1 Score: 359.4 bits (921), Expect = 4.300e-98 Identity = 174/255 (68.24%), Postives = 209/255 (81.96%), Query Frame = 1
BLAST of Spo09220.1 vs. ExPASy Swiss-Prot
Match: TRNHC_ARATH (Tropinone reductase homolog At2g29360 OS=Arabidopsis thaliana GN=SDR PE=1 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 6.200e-89 Identity = 161/253 (63.64%), Postives = 202/253 (79.84%), Query Frame = 1
BLAST of Spo09220.1 vs. ExPASy Swiss-Prot
Match: TRNH6_ARATH (Tropinone reductase homolog At2g29290 OS=Arabidopsis thaliana GN=At2g29290 PE=2 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 5.200e-88 Identity = 159/255 (62.35%), Postives = 199/255 (78.04%), Query Frame = 1
BLAST of Spo09220.1 vs. ExPASy Swiss-Prot
Match: TRNH3_ARATH (Tropinone reductase homolog At2g29150 OS=Arabidopsis thaliana GN=At2g29150 PE=1 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 1.300e-86 Identity = 164/259 (63.32%), Postives = 196/259 (75.68%), Query Frame = 1
BLAST of Spo09220.1 vs. TAIR (Arabidopsis)
Match: AT2G29260.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 407.5 bits (1046), Expect = 7.700e-114 Identity = 200/258 (77.52%), Postives = 227/258 (87.98%), Query Frame = 1
BLAST of Spo09220.1 vs. TAIR (Arabidopsis)
Match: AT5G06060.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 359.4 bits (921), Expect = 2.400e-99 Identity = 174/255 (68.24%), Postives = 209/255 (81.96%), Query Frame = 1
BLAST of Spo09220.1 vs. TAIR (Arabidopsis)
Match: AT2G29360.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 328.9 bits (842), Expect = 3.500e-90 Identity = 161/253 (63.64%), Postives = 202/253 (79.84%), Query Frame = 1
BLAST of Spo09220.1 vs. TAIR (Arabidopsis)
Match: AT2G29290.2 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 325.9 bits (834), Expect = 2.900e-89 Identity = 159/255 (62.35%), Postives = 199/255 (78.04%), Query Frame = 1
BLAST of Spo09220.1 vs. TAIR (Arabidopsis)
Match: AT2G29150.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 321.2 bits (822), Expect = 7.200e-88 Identity = 164/259 (63.32%), Postives = 196/259 (75.68%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09220.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09220.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09220.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo09220.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|