Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATTCAAAATAGAAAAAAAGAGTAAGGTGGGCCTCATGTTTCAAATGGTCAACCTATGTAAGAGAGATAAAGAACCAGATTCGTCTACTCCTTAAAAATCCCAAAATATTAAATTTCAATAATAATTAAAATAAAATAAAATCATTTCCTCCCCCTCGTATTTATTAATAATCACAGCCACCCACCCACTCCAATCCATCCCCACTCCTCCTTCCTTCTTATAATTAACGCAGTAGCATTCTCAATTTCTCATCAATTTCCCCAACTTTCACTTTCTCTCTCCTCAGAAAAAATTCAAAAAAATGGATTCTCATTCTCATTCAAAATATCAAATTCAAGATCAAGCTCTAACTCTCGGATTAGGAATCTCATCATCATCATCATTACTCTCATCAAAAACGAAACAGGTTCAGGTATCGATTCCGTCAGCAGCGACGTCATCATGTTATCATCATCACGAGCCGTCTCTTACTCTCAGCTTATCCGGCGATACATATACGACAGATACACCGATTGCGACACCAGTGAAGGTGGTTGAGCCGCCATGCAGTGGCGGTGGCGGTGTTAGTGTTGTGTCAGTGAAGAGAGAGAGGGAGTCTGCGTGTAGTTCTGATGATTTGGAAATTGAGCGTGGTGGTGGATCTTCTAGAATTAGTGATGAAGATGAAGACGGTTCAGCTGGGCCCACTAATACTCCGAGGAAGAAACTTCGTCTTACTCTTGATCAATCCGCTCTTCTTGAAGAGAGTTTTAAGCAACAGAGTACTCTCAATCCGGTAATTATTTAACGTTTTTTTTATAAATCACCCCCGCGGATTTACGAAATTCACCAAATAATTAACCATGTTTTTTTTTTTTTTTTTTTATGAAAAACACATCCTAAAATGGTTTATTTTAATTAATTAATCTCTTCATTTTAGGAAAAAAAAAATTACACATCCTAAATGGTTTATTTTAATTAATTAATTAATCTTTTCATTTTTTTTTAAAAAAAAACACATCCTAAATGGTTTATTTTAATTAATTAATCTCNTAATCTTTTCATTTTTTTTTAAAAAAAAACACATCCTAAATGGTTTATTTTAATTGTTTCATCTCTTTCATTTTAGTCAATTCCACACAAAAAACACATCCTAAATGGTTTATTTTAATTAATTAATATCTTCATTTTAGTCAATTGAACTATAGGATACCAGAAAAATTAGACCATATCAGATTAAAAAGACAAAAAAGCACCTACAGAAAATATTCAAACCAGTCTAATCTAGAAACTAGAAAAATCAAATCAGACTATTTTTTTATTTTTTTTCTAATTTGTTTTGTTTCATTTTTATTACGGATTACAGAAGCAAAAACTCGCTTTAGCTGACCGATTAAACCTGCGACCACGCCAGGTCGAGGTCTGGTTCCAGAATCGCCGAGCCAGGTACATACATATATATTGTAATTAAACTTTTTGTGACAAAGTACAATTCACGTCTTATTGTAAGTAGCAGAGTGGCCTTAATTACCGATCATACTCATCCTCGTAATTTCAATTTTACAGGACCAAACTCAAGCAAACGGAAGTAGACTGCGAGCACCTAAGAAAATGCTTCGAAACGCTAACGGACGAAAACAGAAGGCTTCAAAAGGAACTACAAGAACTAAAAGCGTTGAAATTAGGACAACCCTTTTACATGCACTTACCAACAGCTGCAGCAGCTGCCCTTACTATGTGCCCTTCGTGTGAGAGGATTGGTGCCAGTGTGCCTACTATTCAAGGGACACCTACTACTACTAGTACTTCTACGACGACTAATGCATCTAATAAGGGCACTCCTTTTACTCTTGGTCTTAGTAAATCCCATTTTTACCCCTCTCCTCATCAAATCCCCTCCTTTACTTGTTAATTTTAAAATTAGTGAAATTTCCAACAAAAAAAATAAAAAATTATAGTATTAGTTAAGGTTTTAGATTATTTTTTCTAGTTTATATACGAAATTAAACCCAAGATTAATTAGTTGAGCACACAAGCTAGCCTTTCTTACAGATGTTTGTGAGCCGGGTCGGGCCGGGCCCACATGAATCTTTAGCTTAATTATATTAATTAAGGTTTTAGATTATTTTTAGTTTATATACGAAATTAAACCCAAGATTAATTAGTTGAGCACACAACTACACAAGTCTGCCGTAAAGATGGTTGTGAGCCGGATCGGATCGTGCTTTGGGCTGAGCCCACGGGCATATTTAGCTAGCCTGCCGTGGACCGAACTTTTTCTCGGTCCCGTATCAATTTTTTTTTTTTATTTCCTTGTTTATCTAGATAGGAAAAAAAAAATTCAGAAAGAAAGTAATTTTTGTTAAAAATGTAGAGAAAAAGTTTAGTGTAAAAATTTTAACTTTTTTTTTTAATTTTTTAATATACGGAATATTACTGATGTAGGTGTGGGTCATTTTCGTAATTATCTTTGTAAATACTCCATGATCATAATGAAGATAAT AAATTCAAAATAGAAAAAAAGAGTAAGGTGGGCCTCATGTTTCAAATGGTCAACCTATGTAAGAGAGATAAAGAACCAGATTCGTCTACTCCTTAAAAATCCCAAAATATTAAATTTCAATAATAATTAAAATAAAATAAAATCATTTCCTCCCCCTCGTATTTATTAATAATCACAGCCACCCACCCACTCCAATCCATCCCCACTCCTCCTTCCTTCTTATAATTAACGCAGTAGCATTCTCAATTTCTCATCAATTTCCCCAACTTTCACTTTCTCTCTCCTCAGAAAAAATTCAAAAAAATGGATTCTCATTCTCATTCAAAATATCAAATTCAAGATCAAGCTCTAACTCTCGGATTAGGAATCTCATCATCATCATCATTACTCTCATCAAAAACGAAACAGGTTCAGGTATCGATTCCGTCAGCAGCGACGTCATCATGTTATCATCATCACGAGCCGTCTCTTACTCTCAGCTTATCCGGCGATACATATACGACAGATACACCGATTGCGACACCAGTGAAGGTGGTTGAGCCGCCATGCAGTGGCGGTGGCGGTGTTAGTGTTGTGTCAGTGAAGAGAGAGAGGGAGTCTGCGTGTAGTTCTGATGATTTGGAAATTGAGCGTGGTGGTGGATCTTCTAGAATTAGTGATGAAGATGAAGACGGTTCAGCTGGGCCCACTAATACTCCGAGGAAGAAACTTCGTCTTACTCTTGATCAATCCGCTCTTCTTGAAGAGAGTTTTAAGCAACAGAGTACTCTCAATCCGAAGCAAAAACTCGCTTTAGCTGACCGATTAAACCTGCGACCACGCCAGGTCGAGGTCTGGTTCCAGAATCGCCGAGCCAGGACCAAACTCAAGCAAACGGAAGTAGACTGCGAGCACCTAAGAAAATGCTTCGAAACGCTAACGGACGAAAACAGAAGGCTTCAAAAGGAACTACAAGAACTAAAAGCGTTGAAATTAGGACAACCCTTTTACATGCACTTACCAACAGCTGCAGCAGCTGCCCTTACTATGTGCCCTTCGTGTGAGAGGATTGGTGCCAGTGTGCCTACTATTCAAGGGACACCTACTACTACTAGTACTTCTACGACGACTAATGCATCTAATAAGGGCACTCCTTTTACTCTTGGTCTTAGTAAATCCCATTTTTACCCCTCTCCTCATCAAATCCCCTCCTTTACTTGTTAATTTTAAAATTAGTGAAATTTCCAACAAAAAAAATAAAAAATTATAGTATTAGTTAAGGTTTTAGATTATTTTTTCTAGTTTATATACGAAATTAAACCCAAGATTAATTAGTTGAGCACACAAGCTAGCCTTTCTTACAGATGTTTGTGAGCCGGGTCGGGCCGGGCCCACATGAATCTTTAGCTTAATTATATTAATTAAGGTTTTAGATTATTTTTAGTTTATATACGAAATTAAACCCAAGATTAATTAGTTGAGCACACAACTACACAAGTCTGCCGTAAAGATGGTTGTGAGCCGGATCGGATCGTGCTTTGGGCTGAGCCCACGGGCATATTTAGCTAGCCTGCCGTGGACCGAACTTTTTCTCGGTCCCGTATCAATTTTTTTTTTTTATTTCCTTGTTTATCTAGATAGGAAAAAAAAAATTCAGAAAGAAAGTAATTTTTGTTAAAAATGTAGAGAAAAAGTTTAGTGTAAAAATTTTAACTTTTTTTTTTAATTTTTTAATATACGGAATATTACTGATGTAGGTGTGGGTCATTTTCGTAATTATCTTTGTAAATACTCCATGATCATAATGAAGATAAT ATGGATTCTCATTCTCATTCAAAATATCAAATTCAAGATCAAGCTCTAACTCTCGGATTAGGAATCTCATCATCATCATCATTACTCTCATCAAAAACGAAACAGGTTCAGGTATCGATTCCGTCAGCAGCGACGTCATCATGTTATCATCATCACGAGCCGTCTCTTACTCTCAGCTTATCCGGCGATACATATACGACAGATACACCGATTGCGACACCAGTGAAGGTGGTTGAGCCGCCATGCAGTGGCGGTGGCGGTGTTAGTGTTGTGTCAGTGAAGAGAGAGAGGGAGTCTGCGTGTAGTTCTGATGATTTGGAAATTGAGCGTGGTGGTGGATCTTCTAGAATTAGTGATGAAGATGAAGACGGTTCAGCTGGGCCCACTAATACTCCGAGGAAGAAACTTCGTCTTACTCTTGATCAATCCGCTCTTCTTGAAGAGAGTTTTAAGCAACAGAGTACTCTCAATCCGAAGCAAAAACTCGCTTTAGCTGACCGATTAAACCTGCGACCACGCCAGGTCGAGGTCTGGTTCCAGAATCGCCGAGCCAGGACCAAACTCAAGCAAACGGAAGTAGACTGCGAGCACCTAAGAAAATGCTTCGAAACGCTAACGGACGAAAACAGAAGGCTTCAAAAGGAACTACAAGAACTAAAAGCGTTGAAATTAGGACAACCCTTTTACATGCACTTACCAACAGCTGCAGCAGCTGCCCTTACTATGTGCCCTTCGTGTGAGAGGATTGGTGCCAGTGTGCCTACTATTCAAGGGACACCTACTACTACTAGTACTTCTACGACGACTAATGCATCTAATAAGGGCACTCCTTTTACTCTTGGTCTTAGTAAATCCCATTTTTACCCCTCTCCTCATCAAATCCCCTCCTTTACTTGTTAA MDSHSHSKYQIQDQALTLGLGISSSSSLLSSKTKQVQVSIPSAATSSCYHHHEPSLTLSLSGDTYTTDTPIATPVKVVEPPCSGGGGVSVVSVKRERESACSSDDLEIERGGGSSRISDEDEDGSAGPTNTPRKKLRLTLDQSALLEESFKQQSTLNPKQKLALADRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLRKCFETLTDENRRLQKELQELKALKLGQPFYMHLPTAAAAALTMCPSCERIGASVPTIQGTPTTTSTSTTTNASNKGTPFTLGLSKSHFYPSPHQIPSFTC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09253.1 vs. NCBI nr
Match: gi|902088300|gb|KNA03269.1| (hypothetical protein SOVF_210810 [Spinacia oleracea]) HSP 1 Score: 571.6 bits (1472), Expect = 7.900e-160 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1
BLAST of Spo09253.1 vs. NCBI nr
Match: gi|731339323|ref|XP_010680788.1| (PREDICTED: homeobox-leucine zipper protein HAT22-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 312.0 bits (798), Expect = 1.100e-81 Identity = 198/289 (68.51%), Postives = 214/289 (74.05%), Query Frame = 1
BLAST of Spo09253.1 vs. NCBI nr
Match: gi|296090659|emb|CBI41059.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 231.1 bits (588), Expect = 2.500e-57 Identity = 161/293 (54.95%), Postives = 186/293 (63.48%), Query Frame = 1
BLAST of Spo09253.1 vs. NCBI nr
Match: gi|590706123|ref|XP_007047635.1| (Homeodomain-leucine zipper protein HD4 [Theobroma cacao]) HSP 1 Score: 227.3 bits (578), Expect = 3.700e-56 Identity = 154/283 (54.42%), Postives = 180/283 (63.60%), Query Frame = 1
BLAST of Spo09253.1 vs. NCBI nr
Match: gi|731441064|ref|XP_010647310.1| (PREDICTED: homeobox-leucine zipper protein HAT22 isoform X3 [Vitis vinifera]) HSP 1 Score: 226.5 bits (576), Expect = 6.200e-56 Identity = 162/295 (54.92%), Postives = 191/295 (64.75%), Query Frame = 1
BLAST of Spo09253.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7R0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_210810 PE=4 SV=1) HSP 1 Score: 571.6 bits (1472), Expect = 5.500e-160 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1
BLAST of Spo09253.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAL1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g137340 PE=4 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 7.900e-82 Identity = 198/289 (68.51%), Postives = 214/289 (74.05%), Query Frame = 1
BLAST of Spo09253.1 vs. UniProtKB/TrEMBL
Match: A0A061DHW3_THECC (Homeodomain-leucine zipper protein HD4 OS=Theobroma cacao GN=TCM_000867 PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 2.600e-56 Identity = 154/283 (54.42%), Postives = 180/283 (63.60%), Query Frame = 1
BLAST of Spo09253.1 vs. UniProtKB/TrEMBL
Match: A5B626_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0732g00010 PE=4 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 7.400e-56 Identity = 163/307 (53.09%), Postives = 192/307 (62.54%), Query Frame = 1
BLAST of Spo09253.1 vs. UniProtKB/TrEMBL
Match: A0A068U3C2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040104001 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 2.200e-55 Identity = 165/298 (55.37%), Postives = 184/298 (61.74%), Query Frame = 1
BLAST of Spo09253.1 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.600e-51 Identity = 148/291 (50.86%), Postives = 179/291 (61.51%), Query Frame = 1
BLAST of Spo09253.1 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 4.100e-47 Identity = 127/247 (51.42%), Postives = 153/247 (61.94%), Query Frame = 1
BLAST of Spo09253.1 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2) HSP 1 Score: 189.1 bits (479), Expect = 6.900e-47 Identity = 127/247 (51.42%), Postives = 152/247 (61.54%), Query Frame = 1
BLAST of Spo09253.1 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 6.900e-47 Identity = 128/245 (52.24%), Postives = 150/245 (61.22%), Query Frame = 1
BLAST of Spo09253.1 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2) HSP 1 Score: 188.7 bits (478), Expect = 9.000e-47 Identity = 147/291 (50.52%), Postives = 170/291 (58.42%), Query Frame = 1
BLAST of Spo09253.1 vs. TAIR (Arabidopsis)
Match: AT4G37790.1 (Homeobox-leucine zipper protein family) HSP 1 Score: 204.5 bits (519), Expect = 9.000e-53 Identity = 148/291 (50.86%), Postives = 179/291 (61.51%), Query Frame = 1
BLAST of Spo09253.1 vs. TAIR (Arabidopsis)
Match: AT2G22800.1 (Homeobox-leucine zipper protein family) HSP 1 Score: 188.7 bits (478), Expect = 5.100e-48 Identity = 147/291 (50.52%), Postives = 170/291 (58.42%), Query Frame = 1
BLAST of Spo09253.1 vs. TAIR (Arabidopsis)
Match: AT5G06710.1 (homeobox from Arabidopsis thaliana) HSP 1 Score: 185.7 bits (470), Expect = 4.300e-47 Identity = 111/185 (60.00%), Postives = 129/185 (69.73%), Query Frame = 1
BLAST of Spo09253.1 vs. TAIR (Arabidopsis)
Match: AT2G44910.1 (homeobox-leucine zipper protein 4) HSP 1 Score: 179.5 bits (454), Expect = 3.100e-45 Identity = 114/210 (54.29%), Postives = 141/210 (67.14%), Query Frame = 1
BLAST of Spo09253.1 vs. TAIR (Arabidopsis)
Match: AT3G60390.1 (homeobox-leucine zipper protein 3) HSP 1 Score: 174.1 bits (440), Expect = 1.300e-43 Identity = 96/164 (58.54%), Postives = 120/164 (73.17%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09253.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09253.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09253.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo09253.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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