Spo09321 (gene) | SpinachBase

Overview


Name	Spo09321
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ubiquitin
Location	chr6 : 35584573 .. 35586660 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTAGAATCCTCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAGCGTCTTATCTTCGCCGGAAAACAGCTTGAAGACGGACGCACACTTGCCGACTACAACATCCAGAAGGAGTCTACCCTCCACCTTGTCCTTCGCCTTCGTGGTGGCGCAAAGAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGCTTAAGCACAAGAAGAAGAAGGTCAAGCTTTCTATTCTTCAGTTTTACAAGGTCGATGATTCCGCTAAGGTTCAGAGGTTGAGGAAGGAGTGCCCTAATGCTGAGTGTGGTGCTGGTACTTTTATGGCTAACCATTTTGATCGCCATTATTGTGGTAAGTGTGGCCTTACCTATGTTTACCAAAAGGCTGGAGGTGATTAAGTGTTAGTTTGTGTACTTGAGGGATTTTCTCTCTCTCCTCAAAATTTCGTTTTAATTTATGTTTGGTTAGTAGTTTTTGAAGAAACATATGAGACTGTTTCATCTTTAGTTTGATGATTATAATGTTTGTTGAGAATTGATTATATAATTGCTCTCTTGAGAATTTGGATCTACAATTTTGATTTTGTTACTCTAGTTGCTTGAATTTACAGATAATTTGTGTCATTGGGTAATTTTGCTGGTTTGTTTAGTATTTTTATAAGGATATGTATAATAACATCCCTGGGTTTTGTTTATAGTATTTGTCACGACATAACTTTCTATCAAGGTTCCTTTTGTTAAAAAAAAAAAAACTTTCTATCAAGGTGAGTTTTATGGAGTCTGTTGTCATTTAATCATCGTGAAATTCCAGACATCAGAATGTACATATCCTTATTTTCACCAAGTTAAGTTACCAGAGTTTTCATCAGAATTTACTCCTGGATACCCTGCTTATTCTTGGAGGAAACCATATTTTTAGATAAATTGACTCTGTTTGTCGAGAGTCAGCACCCAGTTCCTTTCACTCCAAAATGTCAGCCAAGTTTGGATTATGTATTTAGCTTTGGTTCCCTGTAAAAGAATTAATGAGATAGTAGGAAGAGTACCCTATAGCTAGAAATTAGATTATGGACAATTATATGACCTAAGTACCTTTAATCGAGTTATTTTAGTTTTTTTTTTTTGCATAACTTGTTCAGAACTTCTTGACTTTGTATATTTACTGACCGGTACACCATCCAGATCCGTAATTAGGGAGAACTCTTTTCCATGGAAATCTTGGCGAAATTCCTTTACTTTCATGGTATAATAGTTCCATAAGTTGGGTAAGACATCCTGGAGGAAAGCAATAAACTCGCTTGCATGCTCAATAGATTTCTATAGCTTGCACCATTCATTCTAAAGTGAATTGTTTTGATCTAATAGTGTCCGCTTTAGTTGTCTTTACATAATCTGATCATCATTTATCTCAGTGGTTTGTCTTTACATAATCTGATCATCATTTATCTCAGTGGTTAGTCTTTACATAATCTGATGTGTCAGCAACTGATGTACTGATGCAGTGAGTGAGTATTGGAGTAATATTGTTCTTTCTTATGCCCTTTTCTTGACACATTCGTATTTCGTAGTAGTTTTGGGAGCTTTTCACTCAACTTTTGAATGTCATTTCCATAAATACACTGATATGCTTCTCTTAAGCTAGCTCCCTTTCTTTGGGAGGGGAATTAGAAATACATTCTATGGAACTACTCCAAACTTTATACGATTCCCACAATCTTGTACAATCCTTCATTCTGTATGGTGGTAAACAACAACCAATTCACTTCCAGGGAGATGAATATGTTAAAACATAAACATTCATTCATATCTTCTTTGCTTCTAGACTGACATCGATCTTATCCATCAAACATACTTTCTCTTGTAAGAACACTTTTGTAGTCCGACATCATCGATTGGCAAGGGTTCTTCAGGAAACTGACATTCTGTCATATGATCTGCTCCTTGATTGGCCAAGCATCACAAGGATTAGGCGATACACCACTCGAAACCCCAGAAACATCAGTACAAGCCCACTGA

mRNA sequence

ATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTAGAATCCTCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAGCGTCTTATCTTCGCCGGAAAACAGCTTGAAGACGGACGCACACTTGCCGACTACAACATCCAGAAGGAGTCTACCCTCCACCTTGTCCTTCGCCTTCGTGGTGGCGCAAAGAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGCTTAAGCACAAGAAGAAGAAGGTCAAGCTTTCTATTCTTCAGTTTTACAAGGTCGATGATTCCGCTAAGGTTCAGAGGTTGAGGAAGGAGTGCCCTAATGCTGAGTGTGGTGCTGGTACTTTTATGGCTAACCATTTTGATCGCCATTATTGTGCATCACAAGGATTAGGCGATACACCACTCGAAACCCCAGAAACATCAGTACAAGCCCACTGA

Coding sequence (CDS)

ATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTAGAATCCTCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAGCGTCTTATCTTCGCCGGAAAACAGCTTGAAGACGGACGCACACTTGCCGACTACAACATCCAGAAGGAGTCTACCCTCCACCTTGTCCTTCGCCTTCGTGGTGGCGCAAAGAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGCTTAAGCACAAGAAGAAGAAGGTCAAGCTTTCTATTCTTCAGTTTTACAAGGTCGATGATTCCGCTAAGGTTCAGAGGTTGAGGAAGGAGTGCCCTAATGCTGAGTGTGGTGCTGGTACTTTTATGGCTAACCATTTTGATCGCCATTATTGTGCATCACAAGGATTAGGCGATACACCACTCGAAACCCCAGAAACATCAGTACAAGCCCACTGA

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKECPNAECGAGTFMANHFDRHYCASQGLGDTPLETPETSVQAH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo09321.1	Spo09321.1	mRNA

Homology

[Close]

BLAST of Spo09321.1 vs. NCBI nr
Match: gi|902223821|gb|KNA19594.1| (hypothetical protein SOVF_059910 [Spinacia oleracea])

HSP 1 Score: 278.5 bits (711), Expect = 7.500e-72
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. NCBI nr
Match: gi|449450454|ref|XP_004142977.1| (PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 4.800e-71
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHKKKKVKLS+LQFYKVDDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. NCBI nr
Match: gi|848850979|ref|XP_012834695.1| (PREDICTED: ubiquitin-40S ribosomal protein S27a [Erythranthe guttata])

HSP 1 Score: 275.0 bits (702), Expect = 8.200e-71
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLS+LQ+YK+DDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSVLQYYKIDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. NCBI nr
Match: gi|126038342|gb|ABN72579.1| (ubiquitin extension protein [Hevea brasiliensis])

HSP 1 Score: 275.0 bits (702), Expect = 8.200e-71
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHKKKKVKL+ILQFYKVDDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAILQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. NCBI nr
Match: gi|848870660|ref|XP_012835920.1| (PREDICTED: ubiquitin-40S ribosomal protein S27a [Erythranthe guttata])

HSP 1 Score: 275.0 bits (702), Expect = 8.200e-71
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLS+LQ+YK+DDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSVLQYYKIDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKZ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_034880 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.200e-72
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LQL6_CUCSA (Ubiquitin extension protein OS=Cucumis sativus GN=Csa_2G348875 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.400e-71
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHKKKKVKLS+LQFYKVDDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. UniProtKB/TrEMBL
Match: A9XB15_HEVBR (Ubiquitin extension protein OS=Hevea brasiliensis GN=UEP1 PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.700e-71
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHKKKKVKL+ILQFYKVDDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAILQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. UniProtKB/TrEMBL
Match: A0A022S3M2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015483mg PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.700e-71
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLS+LQ+YK+DDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSVLQYYKIDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. UniProtKB/TrEMBL
Match: A0A022REN0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015486mg PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.700e-71
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLS+LQ+YK+DDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSVLQYYKIDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.500e-72
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHKKKKVKL++LQFYKVDD+ KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.500e-72
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHKKKKVKL++LQFYKVDD+ KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNAECGAGTFMANHFDRHYC   GL
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=2)

HSP 1 Score: 269.2 bits (687), Expect = 2.800e-71
Identity = 136/145 (93.79%), Postives = 139/145 (95.86%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHK KKVKL++LQFYKVDDS KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQG 146
           CPN ECGAGTFMANHFDRHYC   G
Sbjct: 121 CPNTECGAGTFMANHFDRHYCGKCG 145

[Close]

BLAST of Spo09321.1 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=RPS27AB PE=1 SV=2)

HSP 1 Score: 265.4 bits (677), Expect = 4.100e-70
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHK KKVKL++LQFYKVD S KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNA CGAGTFMA+HFDRHYC   GL
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=RPS27AC PE=1 SV=2)

HSP 1 Score: 265.0 bits (676), Expect = 5.300e-70
Identity = 134/146 (91.78%), Postives = 139/146 (95.21%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHK KKVKL++LQFYK+D S KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNA CGAGTFMA+HFDRHYC   GL
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. TAIR (Arabidopsis)
Match: AT2G47110.1 (ubiquitin 6)

HSP 1 Score: 265.4 bits (677), Expect = 2.300e-71
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHK KKVKL++LQFYKVD S KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNA CGAGTFMA+HFDRHYC   GL
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. TAIR (Arabidopsis)
Match: AT3G62250.1 (ubiquitin 5)

HSP 1 Score: 265.0 bits (676), Expect = 3.000e-71
Identity = 134/146 (91.78%), Postives = 139/146 (95.21%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KHK KKVKL++LQFYK+D S KVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQGL 147
           CPNA CGAGTFMA+HFDRHYC   GL
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGL 146

[Close]

BLAST of Spo09321.1 vs. TAIR (Arabidopsis)
Match: AT1G23410.1 (Ribosomal protein S27a / Ubiquitin family protein)

HSP 1 Score: 255.4 bits (651), Expect = 2.400e-68
Identity = 129/145 (88.97%), Postives = 135/145 (93.10%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKLKHKKKKVKLSILQFYKVDDSAKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKK+KH  KKVKL++LQFYKVD S KVQRL+KE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCASQG 146
           CP+  CG GTFMA+HFDRHYC   G
Sbjct: 121 CPSVSCGPGTFMASHFDRHYCGKCG 145

[Close]

BLAST of Spo09321.1 vs. TAIR (Arabidopsis)
Match: AT5G03240.1 (polyubiquitin 3)

HSP 1 Score: 149.8 bits (377), Expect = 1.400e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGA 78
           IQKESTLHLVLRLRGG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305

[Close]

BLAST of Spo09321.1 vs. TAIR (Arabidopsis)
Match: AT5G20620.1 (ubiquitin 4)

HSP 1 Score: 149.8 bits (377), Expect = 1.400e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query: 61  IQKESTLHLVLRLRGGA 78
           IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGS 381

The following BLAST results are available for this feature:

BLAST of Spo09321.1 vs. NCBI nr
BLAST of Spo09321.1 vs. UniProtKB/TrEMBL
BLAST of Spo09321.1 vs. ExPASy Swiss-Prot
BLAST of Spo09321.1 vs. TAIR (Arabidopsis)

BLAST of Spo09321.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902223821\|gb\|KNA19594.1\|	7.5e-72	97.9	hypothetical protein SOVF_0599...	[more]
gi\|449450454\|ref\|XP_004142977.1\|	4.8e-71	95.8	PREDICTED: ubiquitin-40S ribos...	[more]
gi\|848850979\|ref\|XP_012834695.1\|	8.2e-71	95.2	PREDICTED: ubiquitin-40S ribos...	[more]
gi\|126038342\|gb\|ABN72579.1\|	8.2e-71	95.8	ubiquitin extension protein [H...	[more]
gi\|848870660\|ref\|XP_012835920.1\|	8.2e-71	95.2	PREDICTED: ubiquitin-40S ribos...	[more]

BLAST of Spo09321.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RKZ3_SPIOL	5.2e-72	97.9	Uncharacterized protein OS=Spi...	[more]
A0A0A0LQL6_CUCSA	3.4e-71	95.8	Ubiquitin extension protein OS...	[more]
A9XB15_HEVBR	5.7e-71	95.8	Ubiquitin extension protein OS...	[more]
A0A022S3M2_ERYGU	5.7e-71	95.2	Uncharacterized protein OS=Ery...	[more]
A0A022REN0_ERYGU	5.7e-71	95.2	Uncharacterized protein OS=Ery...	[more]

BLAST of Spo09321.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RS27A_SOLTU	1.5e-72	94.5	Ubiquitin-40S ribosomal protei...	[more]
RS27A_SOLLC	1.5e-72	94.5	Ubiquitin-40S ribosomal protei...	[more]
RS27A_LUPAL	2.8e-71	93.7	Ubiquitin-40S ribosomal protei...	[more]
R27AB_ARATH	4.1e-70	92.4	Ubiquitin-40S ribosomal protei...	[more]
R27AC_ARATH	5.3e-70	91.7	Ubiquitin-40S ribosomal protei...	[more]

BLAST of Spo09321.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G47110.1	2.3e-71	92.4	ubiquitin 6	[more]
AT3G62250.1	3.0e-71	91.7	ubiquitin 5	[more]
AT1G23410.1	2.4e-68	88.9	Ribosomal protein S27a / Ubiqu...	[more]
AT5G03240.1	1.4e-36	98.7	polyubiquitin 3	[more]
AT5G20620.1	1.4e-36	98.7	ubiquitin 4	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 3..74 score: 3.9
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 1..72 score: 3.0
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30
IPR002906	Ribosomal protein S27a	PFAM	PF01599	Ribosomal_S27	coord: 102..143 score: 3.9
IPR002906	Ribosomal protein S27a	SMART	SM01402	Ribosomal_S27_2	coord: 102..147 score: 2.4
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 100..142 score: 3.48
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52 scor
IPR019956	Ubiquitin	PRINTS	PR00348	UBIQUITIN	coord: 11..31 score: 6.2E-39coord: 53..74 score: 6.2E-39coord: 32..52 score: 6.2
None	No IPR available	GENE3D	3.10.20.90		coord: 1..88 score: 9.7
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..141 score: 1.7E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010731	protein glutathionylation
biological_process	GO:0006412	translation
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006754	ATP biosynthetic process
biological_process	GO:0019852	L-ascorbic acid metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0010583	response to cyclopentenone
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009636	response to toxic substance
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0001510	RNA methylation
biological_process	GO:0009733	response to auxin
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006749	glutathione metabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004364	glutathione transferase activity
molecular_function	GO:0045174	glutathione dehydrogenase (ascorbate) activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0000906	6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0046914	transition metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21716	0.81	Barchart \| Table
Spo11336	0.79	Barchart \| Table
Spo15244	0.78	Barchart \| Table
Spo01967	0.76	Barchart \| Table
Spo00538	0.74	Barchart \| Table
Spo02751	0.74	Barchart \| Table
Spo09460	0.74	Barchart \| Table
Spo25995	0.74	Barchart \| Table
Spo23709	0.73	Barchart \| Table
Spo18270	0.72	Barchart \| Table
Spo27236	0.71	Barchart \| Table
Spo18232	0.71	Barchart \| Table
Spo02663	0.71	Barchart \| Table
Spo05810	0.71	Barchart \| Table
Spo07549	0.71	Barchart \| Table
Spo00754	0.71	Barchart \| Table
Spo23874	0.71	Barchart \| Table
Spo10820	0.71	Barchart \| Table
Spo10817	0.70	Barchart \| Table
Spo16392	0.70	Barchart \| Table
Spo19407	0.70	Barchart \| Table
Spo25503	0.69	Barchart \| Table
Spo03006	0.69	Barchart \| Table
Spo15343	0.68	Barchart \| Table
Spo07806	0.68	Barchart \| Table
Spo16436	0.68	Barchart \| Table
Spo25175	0.68	Barchart \| Table
Spo07315	0.67	Barchart \| Table
Spo11682	0.67	Barchart \| Table
Spo28268	0.67	Barchart \| Table
Spo25742	0.67	Barchart \| Table
Spo11995	0.67	Barchart \| Table
Spo23067	0.67	Barchart \| Table
Spo02049	0.66	Barchart \| Table
Spo01224	0.66	Barchart \| Table
Spo08497	0.66	Barchart \| Table
Spo18201	0.65	Barchart \| Table
Spo18000	0.65	Barchart \| Table
Spo20605	0.65	Barchart \| Table
Spo19305	0.65	Barchart \| Table