Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAATGAGCAAGTTTGCCTATAAAAGCAGCCTTCCCCCCACCAATTTTCCTCCCCCTCTCTTCTCTTCCTTCTTGCATAAAATTGCAATCACAATTCTTTTCCCCTCTCTCTTAAATTCTCTCTCATCTCTTCATCTGGTATGTCCCATTTTCAACTTACATTTTTATAAATCTTGTTACATGAATAATGTTGCCAGTCCAACATCAAATATATTACTAGTAGGTCTTTTTAAAAAGTATTCCACTTCCCAGATTTAACGTTAGTTGATCACATACGAACTCTTGTATCAGACTGTCTATCTGTCTGTCTTATAAGACCTTCTAATAATAGTCATACGCCGAAATGTTTATTCTTTTGGCAAGAGTATTCTAGACGATCTAGTTTAATTATGTGTTTTGACAACAGTATTTTGCAAAATTATTTATATATTTTAGTTTTCTAAAATCCATGGTGCATTTGCTTGATTTCTGCTTAAAACCTCTAAAGTCTTAACTCAACTTTAAACAAACTGTCATATGCATGTGATTATTTCAAATTTTATATTTTTGACAAAGGCTTAAGATACATGTGAATTTCGTTGTTAATATATTAATTCGTGCATGTCTCCTTTCCAGAACTTAAAAAAGTCACAATGGCATACGAGGATCGCTACGTACAAGCCCCAAAATATGATTGCCTTTTGTTTGGTAAGTTTTTTATATTTTTGTCAATAACCTCAAAACTGAATGTAATAAACCAATTAATGGACATTTGTTTCATTCCTACCCAAATTAATACGATACCAAAAGTTTAATTCTAAAAGGACGAGATCAGCTGGCGACCACTACGTAAGGTAATATTTATTTGGACTTAGAAAGATGACAATCATTAATTCATTATATGTCCTGTATATGAGGAGAGAAAAATAATTTATAAAATACAAATTGGCTTTACTTTGATCCGATAGGGTACTTTAATTAACTTACAATTTTACTAAATAAAATTATAATACGAGTACTATAATATTTGGGTTTATTAATTCTATGAACCCTATTTCACCATAATTTTGATGGTCGGTGGTCCATAACACAACAAAACTTACAAAAATTGAATTGGTCTAACCTTGGAATTAAAATTCTAATACTTGTATTATATGATTGAATTGAAACAGATTTAGACGATACTTTGTATCCTCTTAGCTCGGGGTTGTCAAAAGGAGTATTGAAGAACATTCAAGGTACGGTCTCCGCTTCTAAAATTAATAGTCACGTTAATTATAAATTCAATAATATAAATTGAACTAGTGTATGTGTGTGCCTATTTACTATTTAGTCTTTTGAGAGTGATGGATAGCTTAGTTGGTTAGAGCTTCCATCCCGATTTCAGGTGATTCTGGGATTGATTCTCATCCCCGCCCTTGTGGCTCATATGCACCAACGGAAAAAAAAAAAAAAATATTTAGTTTTTTCGATTTTGTTTTTATCACGAGTGAAATAAATCAATAATGTTGTTCTAATTGTATGTTTTTTAACAGACTATATGGTCGAAAAGCTAGGCATAGACAGGAGTAAGATAGATGATTTGTCTAACCTTTTATACAAGAACTACGGCACGACAATGGCTGGTCTAAGGGTATGTTTCTTTATTTACGTCACGTATTTGTATATTTTCGTTACATTATTAGACTTTATTACTATTATAACTTTAAAATTGATTTTAAATATCTTTTATGTGCAGGCAATTGGCTACGATTTTGACTACGATGAATATCATAGGTACACAACTTACTCATCTTTCTTAAATTAGTTATTAATACCATTAATTAACTCGTAACAAAATATCTAATAATATCTTTGTATTATAGTTTTGTTCATGGAAAATTGCCTTACGAGAATCTTAAACCGGACCCTGTTCTACGAAACCTTTTATTGAGCACTCCTATTCGTAAAGTTGTAAGTTTTTATTCTCATAATTTTTTTTAAAAAAAAATCTTAATACATTGAACTTACTTATCGTATCTAACTCGTTACGTTGTTTGGGCCATAGATTTTTACAAATGCGGATGAGACCCACGCTATTAAGGCGCTAAGCAAGCTCGGGTTGGAGGATTGCTTCGAGGGTATAATCTGTTTTGAGACCCTTAACCCGATCCATAAAAATTTTGCATCGGATGATGAAGACGATATTGAGTTTGTGGGTACAAAGCCAAAGACCCTTCCAAATGACAACAATGCTAACAACGATACTCAAATATTCGATATAATTAGTCATTTCGCCAACCAAAATGATGCAACCACATTGCCAAAGACACCCGTCATTTGTAAACCTTCAGAATATGCAATTGAAAAGGCACTTAAGATTGCCAATTTGAACCCTTCAAAAACAGTAATCTCCATTTTATTTCAATTTTAAAATTCAATTTGAAAGATAAAATAATGTTAAGTTGAATTCTAATGATTGGAATCGGTCCATTTTCAGATATTCTTTGATGATAGTGTCAGAAATATAGTGGCTGGAAAACGTGTGGGTCTTGACACTGTACTGGTAAGCATTTCTCTAATAATTGTTGATTGGTCTATTTTAATTTTTCGTAAAAGTCAAAGTGATGCAACTGTTTCGAACTACTCATATTATTGTTTTAAATGATTCTGCTTAGAGTGGGCCCCACATTCTTTGTTGTCTATCTTATGTGTTTATTTATGGGTGAAAATTGTGGTGGATGTATCATGTATGTAGGTGGGTACTTGTCATCGACCAAAAGGAGCAGATTATGCACTGGAGAGCATCCACAATCTAAGAGAAGCATTGCCAGAGCTTTGGGAATTAGCTGATATCAGGACTGAAATTTACTCCGACAAAATATCAATTGAGACTTCTGTCATTGCTTAATTAAACAAATCTTCTAATAACCTCGCCGTTCAAAATCAATAGTCACATTAATACAGTCAATTACCGGACTAGTAATGTGACAATCATATCAAAACGGACGTGCAGTGGCCATAAACTATGTTCCTATTCGATCCGAGATAATAGAGGAGTTTCAAGATAGAAGTATTAAAATAAGAAGAAAGACCGGGATCAAGGGTAATATAGTTTGTATCATAAAAATCTCTCAAATTTTCTGAAATTAAAATGATGAGTGATGATGTACATGCAGTTTTTTCCACCTCTATTTTCCAATTATTTTGGGATGATGTCATTTATTTTAGCATTTAGCAAGATAGAACTCATAGAAGTTCCCACACTTATGTAGTTATGTTTCTTTCAATAATTCCTTGGCATTTTGTTCCTGTA ATAATGAGCAAGTTTGCCTATAAAAGCAGCCTTCCCCCCACCAATTTTCCTCCCCCTCTCTTCTCTTCCTTCTTGCATAAAATTGCAATCACAATTCTTTTCCCCTCTCTCTTAAATTCTCTCTCATCTCTTCATCTGAACTTAAAAAAGTCACAATGGCATACGAGGATCGCTACGTACAAGCCCCAAAATATGATTGCCTTTTGTTTGATTTAGACGATACTTTGTATCCTCTTAGCTCGGGGTTGTCAAAAGGAGTATTGAAGAACATTCAAGACTATATGGTCGAAAAGCTAGGCATAGACAGGAGTAAGATAGATGATTTGTCTAACCTTTTATACAAGAACTACGGCACGACAATGGCTGGTCTAAGGGCAATTGGCTACGATTTTGACTACGATGAATATCATAGTTTTGTTCATGGAAAATTGCCTTACGAGAATCTTAAACCGGACCCTGTTCTACGAAACCTTTTATTGAGCACTCCTATTCGTAAAGTTATTTTTACAAATGCGGATGAGACCCACGCTATTAAGGCGCTAAGCAAGCTCGGGTTGGAGGATTGCTTCGAGGGTATAATCTGTTTTGAGACCCTTAACCCGATCCATAAAAATTTTGCATCGGATGATGAAGACGATATTGAGTTTGTGGGTACAAAGCCAAAGACCCTTCCAAATGACAACAATGCTAACAACGATACTCAAATATTCGATATAATTAGTCATTTCGCCAACCAAAATGATGCAACCACATTGCCAAAGACACCCGTCATTTGTAAACCTTCAGAATATGCAATTGAAAAGGCACTTAAGATTGCCAATTTGAACCCTTCAAAAACAATATTCTTTGATGATAGTGTCAGAAATATAGTGGCTGGAAAACGTGTGGGTCTTGACACTGTACTGGTGGGTACTTGTCATCGACCAAAAGGAGCAGATTATGCACTGGAGAGCATCCACAATCTAAGAGAAGCATTGCCAGAGCTTTGGGAATTAGCTGATATCAGGACTGAAATTTACTCCGACAAAATATCAATTGAGACTTCTGTCATTGCTTAATTAAACAAATCTTCTAATAACCTCGCCGTTCAAAATCAATAGTCACATTAATACAGTCAATTACCGGACTAGTAATGTGACAATCATATCAAAACGGACGTGCAGTGGCCATAAACTATGTTCCTATTCGATCCGAGATAATAGAGGAGTTTCAAGATAGAAGTATTAAAATAAGAAGAAAGACCGGGATCAAGGGTAATATAGTTTGTATCATAAAAATCTCTCAAATTTTCTGAAATTAAAATGATGAGTGATGATGTACATGCAGTTTTTTCCACCTCTATTTTCCAATTATTTTGGGATGATGTCATTTATTTTAGCATTTAGCAAGATAGAACTCATAGAAGTTCCCACACTTATGTAGTTATGTTTCTTTCAATAATTCCTTGGCATTTTGTTCCTGTA ATGGCATACGAGGATCGCTACGTACAAGCCCCAAAATATGATTGCCTTTTGTTTGATTTAGACGATACTTTGTATCCTCTTAGCTCGGGGTTGTCAAAAGGAGTATTGAAGAACATTCAAGACTATATGGTCGAAAAGCTAGGCATAGACAGGAGTAAGATAGATGATTTGTCTAACCTTTTATACAAGAACTACGGCACGACAATGGCTGGTCTAAGGGCAATTGGCTACGATTTTGACTACGATGAATATCATAGTTTTGTTCATGGAAAATTGCCTTACGAGAATCTTAAACCGGACCCTGTTCTACGAAACCTTTTATTGAGCACTCCTATTCGTAAAGTTATTTTTACAAATGCGGATGAGACCCACGCTATTAAGGCGCTAAGCAAGCTCGGGTTGGAGGATTGCTTCGAGGGTATAATCTGTTTTGAGACCCTTAACCCGATCCATAAAAATTTTGCATCGGATGATGAAGACGATATTGAGTTTGTGGGTACAAAGCCAAAGACCCTTCCAAATGACAACAATGCTAACAACGATACTCAAATATTCGATATAATTAGTCATTTCGCCAACCAAAATGATGCAACCACATTGCCAAAGACACCCGTCATTTGTAAACCTTCAGAATATGCAATTGAAAAGGCACTTAAGATTGCCAATTTGAACCCTTCAAAAACAATATTCTTTGATGATAGTGTCAGAAATATAGTGGCTGGAAAACGTGTGGGTCTTGACACTGTACTGGTGGGTACTTGTCATCGACCAAAAGGAGCAGATTATGCACTGGAGAGCATCCACAATCTAAGAGAAGCATTGCCAGAGCTTTGGGAATTAGCTGATATCAGGACTGAAATTTACTCCGACAAAATATCAATTGAGACTTCTGTCATTGCTTAA MAYEDRYVQAPKYDCLLFDLDDTLYPLSSGLSKGVLKNIQDYMVEKLGIDRSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGKLPYENLKPDPVLRNLLLSTPIRKVIFTNADETHAIKALSKLGLEDCFEGIICFETLNPIHKNFASDDEDDIEFVGTKPKTLPNDNNANNDTQIFDIISHFANQNDATTLPKTPVICKPSEYAIEKALKIANLNPSKTIFFDDSVRNIVAGKRVGLDTVLVGTCHRPKGADYALESIHNLREALPELWELADIRTEIYSDKISIETSVIA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09430.1 vs. NCBI nr
Match: gi|902226588|gb|KNA20418.1| (hypothetical protein SOVF_052570 [Spinacia oleracea]) HSP 1 Score: 612.8 bits (1579), Expect = 3.100e-172 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1
BLAST of Spo09430.1 vs. NCBI nr
Match: gi|731343098|ref|XP_010682722.1| (PREDICTED: uncharacterized protein C24B11.05-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 521.2 bits (1341), Expect = 1.200e-144 Identity = 261/303 (86.14%), Postives = 281/303 (92.74%), Query Frame = 1
BLAST of Spo09430.1 vs. NCBI nr
Match: gi|1012326681|gb|KYP38462.1| (Uncharacterized protein C24B11.05 [Cajanus cajan]) HSP 1 Score: 465.7 bits (1197), Expect = 6.100e-128 Identity = 231/304 (75.99%), Postives = 260/304 (85.53%), Query Frame = 1
BLAST of Spo09430.1 vs. NCBI nr
Match: gi|734436764|gb|KHN48352.1| (Hypothetical protein glysoja_042304 [Glycine soja]) HSP 1 Score: 463.8 bits (1192), Expect = 2.300e-127 Identity = 231/304 (75.99%), Postives = 258/304 (84.87%), Query Frame = 1
BLAST of Spo09430.1 vs. NCBI nr
Match: gi|363807064|ref|NP_001242073.1| (uncharacterized protein LOC100796466 [Glycine max]) HSP 1 Score: 462.2 bits (1188), Expect = 6.800e-127 Identity = 230/304 (75.66%), Postives = 258/304 (84.87%), Query Frame = 1
BLAST of Spo09430.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLP1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_052570 PE=4 SV=1) HSP 1 Score: 612.8 bits (1579), Expect = 2.200e-172 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1
BLAST of Spo09430.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C0Y4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g150480 PE=4 SV=1) HSP 1 Score: 521.2 bits (1341), Expect = 8.600e-145 Identity = 261/303 (86.14%), Postives = 281/303 (92.74%), Query Frame = 1
BLAST of Spo09430.1 vs. UniProtKB/TrEMBL
Match: A0A151R7D6_CAJCA (Uncharacterized protein C24B11.05 OS=Cajanus cajan GN=KK1_040299 PE=4 SV=1) HSP 1 Score: 465.7 bits (1197), Expect = 4.300e-128 Identity = 231/304 (75.99%), Postives = 260/304 (85.53%), Query Frame = 1
BLAST of Spo09430.1 vs. UniProtKB/TrEMBL
Match: I1J6W9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G098700 PE=4 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 1.600e-127 Identity = 231/304 (75.99%), Postives = 258/304 (84.87%), Query Frame = 1
BLAST of Spo09430.1 vs. UniProtKB/TrEMBL
Match: A0A0B2SVT4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_042304 PE=4 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 1.600e-127 Identity = 231/304 (75.99%), Postives = 258/304 (84.87%), Query Frame = 1
BLAST of Spo09430.1 vs. ExPASy Swiss-Prot
Match: YAI5_SCHPO (Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.000e-14 Identity = 50/131 (38.17%), Postives = 72/131 (54.96%), Query Frame = 1
BLAST of Spo09430.1 vs. ExPASy Swiss-Prot
Match: PHM8_YEAST (Phosphate metabolism protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM8 PE=1 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 2.300e-13 Identity = 46/152 (30.26%), Postives = 80/152 (52.63%), Query Frame = 1
BLAST of Spo09430.1 vs. ExPASy Swiss-Prot
Match: SDT1_YEAST (Suppressor of disruption of TFIIS OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDT1 PE=1 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 3.600e-11 Identity = 48/139 (34.53%), Postives = 73/139 (52.52%), Query Frame = 1
BLAST of Spo09430.1 vs. TAIR (Arabidopsis)
Match: AT5G02230.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 386.0 bits (990), Expect = 2.200e-107 Identity = 192/303 (63.37%), Postives = 234/303 (77.23%), Query Frame = 1
BLAST of Spo09430.1 vs. TAIR (Arabidopsis)
Match: AT5G59480.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 355.9 bits (912), Expect = 2.400e-98 Identity = 179/303 (59.08%), Postives = 219/303 (72.28%), Query Frame = 1
BLAST of Spo09430.1 vs. TAIR (Arabidopsis)
Match: AT5G59490.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 318.5 bits (815), Expect = 4.300e-87 Identity = 164/295 (55.59%), Postives = 201/295 (68.14%), Query Frame = 1
BLAST of Spo09430.1 vs. TAIR (Arabidopsis)
Match: AT3G62040.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 223.8 bits (569), Expect = 1.400e-58 Identity = 128/267 (47.94%), Postives = 163/267 (61.05%), Query Frame = 1
BLAST of Spo09430.1 vs. TAIR (Arabidopsis)
Match: AT2G32150.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 182.2 bits (461), Expect = 4.800e-46 Identity = 104/222 (46.85%), Postives = 132/222 (59.46%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09430.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09430.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09430.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo09430.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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