Spo09452 (gene)

Overview
NameSpo09452
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_121 : 103105 .. 105561 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTTTTCCCGGGTAATGAAAGAACGCAGGCACATAGCGGAAGTTTTCACATTGGCGCAAACTTCTGCATAGAGAATCGAGCTAGGAGCCTCCATTGTTTGTATCGCCTCAGCAGGTTAGCATCTACTTCATTCTTTCTCTCTCCTCAACTTCGCTCCTTCTCCTCTCTTCGCCGCCTCTCATCACGACGCAGAAGCTTGATAACCATGGTGCGACAACTGAAGAGAAGGTTATGGCACCGTTAGGCTCGTGGAAGTCGCCGATCACTGTTGAAGTTATGAAGTTATCGCTGTCGTTAAGAAGATCTTCGGTGGAATCGCCGTCCACGGTCATGGCCACTTTTTTGCTTGAATCTCGTCACAAATCTTGTATTATTTCTTCCCTTTTCTAACCGATTAATCAATTTTTTCAGTTATGTCGGTAATTTCTTGTTGTTGATTGATCGATGTATTATCTGTTTATTGCTTATTGATCTGTTTTGCCGATTGTCGGATTATTAGGGTTTATGGTTATGGAGTGTGTTGAATCATGATTTTTTGTGATGGGTTACTGTAATCGATGTCGTTTTTAGTATCAGCATTGGTTGAAATTGTTAATTGTTTTTATTGATTTCTGTTTGGAGAAATTTGATCATCGTTAATGTAAATCATGTCAATATCCGCATTTATATGTTTGGATTGAATTGTTGTTTTGTTATTCTTATTGAAATAGATCTTATTGTGTGAAGGAGGTAACTCTCCCTTAAAATTGAGTGTACCTTCTTCCTTTCTCTCTCTCTCCCAATTCCTATTTTTCTTTTGTGGGTTTTTTTGTCAAGGTTTTGATTTTAATTTCATCGAATTAAATGACAATAGGTGAGAATCATCTGTAAAGGATTCTGAATGATGTTCTGTTTTTAATTTCTTCTATTTTTTTAATTTGTGGTTGTTCTATTCTTTGATGTTCTGTGTTACAACTTGTTAATTGCTGTGATGTTGGTGTAGAGCTGGTTCAGTTATCTGTAGGCTGTAGCATGTTGTTTTTGGTATAATTCAGATCAATAGCAAATCAAGTCAACTTTAGTTAAGTTGGTGCGTTTGTCTGGAAGCTGCAGTAGTGTGGTGTTGGTTAAGGTATGAAGGAAGTATTATCTAACTTGTTAAATTTTATAAAGCTCTTTTCCCGTTTAGGCTTATTTGATTATGACTTTCTATTCTTTTCATTCATAAATCTGAATTATAAAAGGTGTACTCTTATCCTTTAAACTAGGAAGATGTTACAATAAGGTATACATTTGTCCCTTTTACGTTACACTTTCATGTTTATAGTGGTCAGGTTTGTAAGTATGTAAAGGACCGAAGGTTCAAATCTCACTTGTTGATGTGTCCTGTGTTAAAATTAGATTAAAACAGATGCACTTGTTTAGCGTTTAGCTTTGAAACTCAAGTATTTTCGAGGTAGCAGTCTTATTAAGAATTGTTTGTGGCTGTTGAAATTGCATTCAGTTGATCTAAAAGAGTAAATTCCCAGCTGTACGTAGCTTGCTTCATTTGAATTGAAATCAAGTTTCTACACTCCTACAAGGTTTTCAACATTTTTAACCAATTCCAGGTATGATCTCTCTGTAATTGTACGGTTTTGTCTTCCTCGAAATTCTACAGACTGAAATTTATTTTTCGTTTCCATATGCCCAAGTGCAATTGAGCTTGTACTTGTCTTATACTTAGATTTTTTATAGTCTCAACGTTTTGTTAACTTTGTATCTTTTATTTTGTTGCTATATATAAATTCTTCTCTTATTATTGTGTAGACGAGGGGTGCAATTGAGTGAAAGTGCGGTTAGGTGCCTGGGAATTATGGTTTGGGCAGTCAGGGACTTCATTAGCGTGTCCTTGGGTACTGGATAGTTGTCACGAAGGCGAGGCTGAAAATTGCTTCAAGCAGTTTTGATTAGTTCAAACATGAGTTGTTATTTTGTGTTTAAGTACGTGTTCAAGTACTTGTGCTTGCGTGCAGCTGGAAATATATAGGAATATTGTAAGATGCGGAATGCCCAAATTTGATAGTATTTTCATCATATAATATTTTATGAATGAAAGTGATTTTTTTAATGTTCTCTTACTGAATTCTTTTAGTTTTTGGATGTCTCTGAAGAGTGGAGAAGCTTACAACCTCAACTCCGACAATGGAGACAAGTTATAGATTAGTATCTTTGACGTAGCTAGTTTTTTTTTTTTGTTTCTCTGTCTAAACATACGATTGTATATTTAGAATTAAGTTTTGCAACTTACGCATTAGATCTTATTGTATCAATAAGACATTCAGTTTAGGAACTCGGATATGAGATTATTTTGTATTAGCTCACTTAGCTAGTATGGATGATACTTTATTTGACTCTATTTGATTTCACTGTCAAATTTATTGTGATTAATGAAGTTTCTATATTTTACTTTTTTTTAATATCCAATACCTTTTAAA

mRNA sequence

GGGTTTTCCCGGGTAATGAAAGAACGCAGGCACATAGCGGAAGTTTTCACATTGGCGCAAACTTCTGCATAGAGAATCGAGCTAGGAGCCTCCATTGTTTGTATCGCCTCAGCAGGTTAGCATCTACTTCATTCTTTCTCTCTCCTCAACTTCGCTCCTTCTCCTCTCTTCGCCGCCTCTCATCACGACGCAGAAGCTTGATAACCATGGTGCGACAACTGAAGAGAAGGTTATGGCACCGTTAGGCTCGTGGAAGTCGCCGATCACTGTTGAAGTTATGAAGTTATCGCTGTCGTTAAGAAGATCTTCGGTGGAATCGCCGTCCACGGTCATGGCCACTTTTTTGCTTGAATCTCGTCACAAATCTTTTGATCTAAAAGAGTAAATTCCCAGCTGTACGTAGCTTGCTTCATTTGAATTGAAATCAAGTTTCTACACTCCTACAAGGTTTTCAACATTTTTAACCAATTCCAGACGAGGGGTGCAATTGAGTGAAAGTGCGGTTAGGTGCCTGGGAATTATGGTTTGGGCAGTCAGGGACTTCATTAGCGTGTCCTTGGGTACTGGATAGTTGTCACGAAGGCGAGGCTGAAAATTGCTTCAAGCAGTTTTGATTAGTTCAAACATGAGTTGTTATTTTGTGTTTAAGTACGTGTTCAAGTACTTGTGCTTGCGTGCAGCTGGAAATATATAGGAATATTTTTTTGGATGTCTCTGAAGAGTGGAGAAGCTTACAACCTCAACTCCGACAATGGAGACAAGTTATAGATTAGTATCTTTGACGTAGCTAGTTTTTTTTTTTTGTTTCTCTGTCTAAACATACGATTGTATATTTAGAATTAAGTTTTGCAACTTACGCATTAGATCTTATTGTATCAATAAGACATTCAGTTTAGGAACTCGGATATGAGATTATTTTGTATTAGCTCACTTAGCTAGTATGGATGATACTTTATTTGACTCTATTTGATTTCACTGTCAAATTTATTGTGATTAATGAAGTTTCTATATTTTACTTTTTTTTAATATCCAATACCTTTTAAA

Coding sequence (CDS)

ATGGCACCGTTAGGCTCGTGGAAGTCGCCGATCACTGTTGAAGTTATGAAGTTATCGCTGTCGTTAAGAAGATCTTCGGTGGAATCGCCGTCCACGGTCATGGCCACTTTTTTGCTTGAATCTCGTCACAAATCTTTTGATCTAAAAGAGTAA

Protein sequence

MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo09452.1Spo09452.1mRNA


Homology
[Close]
BLAST of Spo09452.1 vs. NCBI nr
Match: gi|902203411|gb|KNA14539.1| (hypothetical protein SOVF_105620, partial [Spinacia oleracea])

HSP 1 Score: 96.3 bits (238), Expect = 1.600e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

		  

Query: 1  MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE 51
          MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE
Sbjct: 41 MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE 90
[Close]
BLAST of Spo09452.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6G3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_105620 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.100e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

		  

Query: 1  MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE 51
          MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE
Sbjct: 41 MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE 90
The following BLAST results are available for this feature:
BLAST of Spo09452.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902203411|gb|KNA14539.1|1.6e-17100.hypothetical protein SOVF_1056... [more]
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BLAST of Spo09452.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R6G3_SPIOL1.1e-17100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo09452.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo09452.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression
   



Co-expression
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