Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTGTTCATTTAGATTTGAAATGTATGTTCATTTTCTATATATTCTTTCGGTATAAATAATATGATCTTTATATTTAAATTAAATGTTCATTTAAAAATTGTACACCCAGATGCATAAATGATAAATCACATTTTGCCCCAACACCCAAAAAAGAACCCAAAAAAATTAAAAATAATAAATAAAATAAAGGATAAGGTGGCTAACGATAAAAAGGCGGGGGAATGGCAATGAAGAAGATAAACCAGAAAATATAGAAGAGATAGGAGCAAAGAGAGAAGTGAGCAAAAAAGCTCAGAAAATTTTCAGGCATGGCTGCGGCAACATCACTGTCATTCTTCCATAGCACTTTAGCATCTTCTTCTTCTTCTTCCGTGCAACAACTGTCATTGCCGCCGAAGTTCGTCAATTTCCGCCCACAAACCCTCCCACTCATCCAAGCTAAGGCCCACACTCGCCGCGAAGACCGCACTGCCCGCCATGTTCGAATTAGGAAGAAGGTAATTTACCACTTTTCTCTTTTAAATATTCATCAATTTATTTTTCAAAAAAATTCTGGGTTTGTTTAGCTTCTGGGGTTTGACCCTTTGCCTTCAATTTTTGTTGGGTTTTGAAATGTGATTGTGAAAATTTCATTTAGTTGTATGTGGCAACATTTTTGCTAGATGAAGTGAATTGTGATAGTTGGTCATTTTGAAGTTGAATTTTAGGGTCTTGATGATAATGAAGAATGTGGGAGTTAAAGATTAGTGTATGGTTCTTGGTGAGAGTGTGAGATTGGTTTAGGAATCGAAGTGAATTATGAAATTTTGTCAATTGAAAGTTAAGTTTTAGTGAGTTTAGAGTTTTGATGAATATGACCCGAAAAATTAGAAGTTGTTGGTGTGTGGAGTGGAGTGGGATGAAAAAGGTGTGACCTATAAGATAATGCAAGGGAAAGTTAGTTTAGAAATGTTTTGTGCATTGTGATTTACTGATTTTGATAGCCGCAATCATGTGTTAGGAGCATAATGTTCATCTTGTGACTGGAAAGCTCTCTAGATTGGGGAGGTTTCATGTGAGTGAAAGATGTGGCAGATGCATATAAATGACCTAATGAATTGAATGTTGAGTGTTCTTTGCTTCTCGTGTCTGTTATTGTTGGTAGTCTATCGAGGGTCTATGTTTTGGTGTGTGCGAAGTGTTGGTTTCTAACATGTGGTGCAAGATGAGCTTTGCATTCTTCACCATCTGAAGGATTCATGAGGTAGGCTACAAGATAACCTCTTTCTGCAATCATTGGAGTATCATAGAAGTAGTATTGAAGAACTTGATGAGCTATTTCCACCTCTAGTTTGTTATACTCGTAGTCTCAACAGTAGGACACTTAATGCAATAGTTGAAATTTCTAATGGTATTAATGTATGATGTATCATGAGTTCATGACAATATCATTATTTGAAGCTATTAGAATATTATACTTAGTAATAGAGCAAAGCTTAACGATTATCTAGTTTCTTTCCACGGTTCTACAATTGGGGAAGTCGACTACTTTTTTTAAGGAAGGAATGAGTGACTTAGAGTCTTGACAAATGCTATACATGCAAAACTATTTAGTGTAAGGATTAAGCTTTTTTGTAATCTACAAAAAAGTCATTTCAGAGGGATTATGTATCAGTTCAATCATACTTGATATTTGCTTTGAAGATAAAAAAGAGATATAATGAAGGTAAGGATATTAATGAGAGCAAAATAAAATGGTTTGTGCTAAACGTACTTATAGTGGTATCTCATATCCTGTTTGTTTGCACTTTTATCTGTCTCCTCAACCACCTGTGTCATGTGACCGAAGTCCAGCTAATGCTTAAAGCCAGATATTTTAACTGACTGTCATAGTAGTTGATTTGGGAAAGTAACCTGATAATAAGTGAGGGGTTTCAAAATAACTTAGCACCCCTAGTGATTCGATACAACTGGTCAAGTTGTAGAACACAATTTGTGATACACAAGCCTTTTTAGTGCTGAAAAATGAGATCATAACAGATTCATCATGAATATGGTATGGACTTGGAGCAGTTTATTTTTCTTTCTTGAATTGTTATAGATTTATAGTTTTTTCAAAGGAAGGTAACTAAGCGCATATAGTACTGCCAGCACTTGTTCAACCAACCCCCCCCCCCCCCCCNCCCCCCCTCTCTCTCTCTCTCCCTGCCTCTTCTTTATCTTTTTTTTGAACTTTTCTACTCAATTCTAATTCTTGTTTAATGTAACTTGTTTTTGGGCGTATAACTTCTGTATCTTGGAATCCAACTCTACTCTCTTGGGAGTTAACATCACACTTTCTTCCAACACTAATGTTTGATGTTCCTCAGGTAGAAGGGACACCAGAAAGGCCAAGACTCTGCGTTTTCCGCTCCAACAAGCATCTCTATGTGCAAGTGATTGATGATACTAAAATGCATACTCTTGCTGCAGCTTCTACAATGCAGAAAGCTATCTCAGAGAACATCGACTATTCTGCAGGTCCCACAGTTGTAAGTACACTGTCTCAGAGAACATTGCTTTGTTTTTTTCTGTATTTTTTCACAGGATTCTATAAGGGATAAAATAATCTTTGTTTCCTGGATTGCTTTACGTATCCAGTATGGCAGTATCCTTAAGAAACATGATAAAGTATGTTGAATTTGCTATGCTGGTTAAATCTATTATCACTATGTTCAATAATGAGATTTTGTTTGAAGCGACAATCAGCTGTTTCACGTACTTCTATTCCATACATTTCCATAGGGCGAGAACATTACTACCTCCATCCGTTAACAAGAAACCGGCCACATTTCTATTGGTTGCTCCAAACTTGTGGGCCACTTTCAGAAGTTGGTTTTTTTTTATACTGTTGACAGTCCTACATGGAATGCTTATCTTTGCTTTTGTTTGAAAAGAAATTTGGAGTTCATTTTTTTCTGGATTGTTATGCTGATTATAGTCTAATTCAATGACAGGAAGTGGCGCAGAAGATAGGTGAAATGATTGCCAAAAGTTGTTTGGAGAAAGGAATAACTAAGGTGGCCTTCGACCGAGGTGGTTACCCTTACCATGGTCGTGTTAAAGCCCTCGCTGATGCAGCCCGAGAACATGGCCTTGTATTCTGAAGCTAAAACTAGATTCCCCTTTCTGTGAGAGATTTTTCTTTTTTCCCAGTCTGTTTAGTTTCTCAGCTACTTAGCAAAGAATTTGTAGTTGAAACGTAAAAAGTCATTTATTTTTGGTACACTGAAAATGGTGTTGAGGAAGTATCATCGTTGTCAATTAATGTTCTGGTTTACTCATTTAAAGGTTTATTCCTTATTTTGATTAATTATTAAACTGTATGGGCAAACCTACTGTAACAATGCCATAGACACAGGCCTCACAATAGAGTTCAATAGGGGTTAGCAGGTATTAATCAAGGATCAGTGAAGTTCAGCATGGTTACTGCATATTTTCCAGGATGTTGAAACATATTTATACCTTTTTCTGTTTTGGTTTGTACAAAAAACATCAGGAGGATATACAATGTGGCTAGTATTTGAATTTAAAGGATACAGGTATATAATGCAATTCAGTCCTGAACTTTCAGGCGCTCAAGACTTTCAATTTCAATCACTAAGCTAAATCCTCATTATAGAGAGAATATCTTAAAGCAATATGGTTAGTATTCCGAATAAAATCGGATGACATCCAAGAAAATAACTTGTGCAGAGAATTTTTTTTCTTGTACACAAGTATTTACATCAATTTCCATTTCCCCAAAGTTCAAATCGCC ATGTTTGTTCATTTAGATTTGAAATGTATGTTCATTTTCTATATATTCTTTCGGTATAAATAATATGATCTTTATATTTAAATTAAATGTTCATTTAAAAATTGTACACCCAGATGCATAAATGATAAATCACATTTTGCCCCAACACCCAAAAAAGAACCCAAAAAAATTAAAAATAATAAATAAAATAAAGGATAAGGTGGCTAACGATAAAAAGGCGGGGGAATGGCAATGAAGAAGATAAACCAGAAAATATAGAAGAGATAGGAGCAAAGAGAGAAGTGAGCAAAAAAGCTCAGAAAATTTTCAGGCATGGCTGCGGCAACATCACTGTCATTCTTCCATAGCACTTTAGCATCTTCTTCTTCTTCTTCCGTGCAACAACTGTCATTGCCGCCGAAGTTCGTCAATTTCCGCCCACAAACCCTCCCACTCATCCAAGCTAAGGCCCACACTCGCCGCGAAGACCGCACTGCCCGCCATGTTCGAATTAGGAAGAAGGTAGAAGGGACACCAGAAAGGCCAAGACTCTGCGTTTTCCGCTCCAACAAGCATCTCTATGTGCAAGTGATTGATGATACTAAAATGCATACTCTTGCTGCAGCTTCTACAATGCAGAAAGCTATCTCAGAGAACATCGACTATTCTGCAGGTCCCACAGTTGAAGTGGCGCAGAAGATAGGTGAAATGATTGCCAAAAGTTGTTTGGAGAAAGGAATAACTAAGGTGGCCTTCGACCGAGGTGGTTACCCTTACCATGGTCGTGTTAAAGCCCTCGCTGATGCAGCCCGAGAACATGGCCTTGTATTCTGAAGCTAAAACTAGATTCCCCTTTCTGTGAGAGATTTTTCTTTTTTCCCAGTCTGTTTAGTTTCTCAGCTACTTAGCAAAGAATTTGTAGTTGAAACGTAAAAAGTCATTTATTTTTGGTACACTGAAAATGGTGTTGAGGAAGTATCATCGTTGTCAATTAATGTTCTGGTTTACTCATTTAAAGGTTTATTCCTTATTTTGATTAATTATTAAACTGTATGGGCAAACCTACTGTAACAATGCCATAGACACAGGCCTCACAATAGAGTTCAATAGGGGTTAGCAGGTATTAATCAAGGATCAGTGAAGTTCAGCATGGTTACTGCATATTTTCCAGGATGTTGAAACATATTTATACCTTTTTCTGTTTTGGTTTGTACAAAAAACATCAGGAGGATATACAATGTGGCTAGTATTTGAATTTAAAGGATACAGGTATATAATGCAATTCAGTCCTGAACTTTCAGGCGCTCAAGACTTTCAATTTCAATCACTAAGCTAAATCCTCATTATAGAGAGAATATCTTAAAGCAATATGGTTAGTATTCCGAATAAAATCGGATGACATCCAAGAAAATAACTTGTGCAGAGAATTTTTTTTCTTGTACACAAGTATTTACATCAATTTCCATTTCCCCAAAGTTCAAATCGCC ATGGCTGCGGCAACATCACTGTCATTCTTCCATAGCACTTTAGCATCTTCTTCTTCTTCTTCCGTGCAACAACTGTCATTGCCGCCGAAGTTCGTCAATTTCCGCCCACAAACCCTCCCACTCATCCAAGCTAAGGCCCACACTCGCCGCGAAGACCGCACTGCCCGCCATGTTCGAATTAGGAAGAAGGTAGAAGGGACACCAGAAAGGCCAAGACTCTGCGTTTTCCGCTCCAACAAGCATCTCTATGTGCAAGTGATTGATGATACTAAAATGCATACTCTTGCTGCAGCTTCTACAATGCAGAAAGCTATCTCAGAGAACATCGACTATTCTGCAGGTCCCACAGTTGAAGTGGCGCAGAAGATAGGTGAAATGATTGCCAAAAGTTGTTTGGAGAAAGGAATAACTAAGGTGGCCTTCGACCGAGGTGGTTACCCTTACCATGGTCGTGTTAAAGCCCTCGCTGATGCAGCCCGAGAACATGGCCTTGTATTCTGA MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09460.1 vs. NCBI nr
Match: gi|902176765|gb|KNA08833.1| (hypothetical protein SOVF_159210 [Spinacia oleracea]) HSP 1 Score: 321.6 bits (823), Expect = 7.900e-85 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of Spo09460.1 vs. NCBI nr
Match: gi|731364722|ref|XP_010694131.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 277.3 bits (708), Expect = 1.700e-71 Identity = 141/167 (84.43%), Postives = 155/167 (92.81%), Query Frame = 1
BLAST of Spo09460.1 vs. NCBI nr
Match: gi|225432240|ref|XP_002270819.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Vitis vinifera]) HSP 1 Score: 239.2 bits (609), Expect = 5.200e-60 Identity = 125/163 (76.69%), Postives = 139/163 (85.28%), Query Frame = 1
BLAST of Spo09460.1 vs. NCBI nr
Match: gi|702509127|ref|XP_010040376.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis]) HSP 1 Score: 233.8 bits (595), Expect = 2.200e-58 Identity = 122/173 (70.52%), Postives = 139/173 (80.35%), Query Frame = 1
BLAST of Spo09460.1 vs. NCBI nr
Match: gi|720087122|ref|XP_010244056.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nelumbo nucifera]) HSP 1 Score: 233.8 bits (595), Expect = 2.200e-58 Identity = 122/161 (75.78%), Postives = 136/161 (84.47%), Query Frame = 1
BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQ60_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159210 PE=3 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 5.500e-85 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BF45_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g070550 PE=3 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 1.200e-71 Identity = 141/167 (84.43%), Postives = 155/167 (92.81%), Query Frame = 1
BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A5BNB6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01140 PE=3 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 3.600e-60 Identity = 125/163 (76.69%), Postives = 139/163 (85.28%), Query Frame = 1
BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A0A058ZTZ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 1.500e-58 Identity = 122/173 (70.52%), Postives = 139/173 (80.35%), Query Frame = 1
BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A0A059D442_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02183 PE=3 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 9.800e-58 Identity = 120/173 (69.36%), Postives = 138/173 (79.77%), Query Frame = 1
BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 2.300e-52 Identity = 106/149 (71.14%), Postives = 120/149 (80.54%), Query Frame = 1
BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 1.700e-47 Identity = 100/158 (63.29%), Postives = 121/158 (76.58%), Query Frame = 1
BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rplR PE=3 SV=2) HSP 1 Score: 146.4 bits (368), Expect = 2.900e-34 Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1
BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 2.900e-34 Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1
BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 2.900e-34 Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1
BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein) HSP 1 Score: 206.5 bits (524), Expect = 1.300e-53 Identity = 106/149 (71.14%), Postives = 120/149 (80.54%), Query Frame = 1
BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein) HSP 1 Score: 70.1 bits (170), Expect = 1.500e-12 Identity = 53/167 (31.74%), Postives = 88/167 (52.69%), Query Frame = 1
BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Match: AT3G17626.1 (structural constituent of ribosome) HSP 1 Score: 58.2 bits (139), Expect = 5.800e-9 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein) HSP 1 Score: 50.1 bits (118), Expect = 1.600e-6 Identity = 30/88 (34.09%), Postives = 48/88 (54.55%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09460.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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