Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGTTAAGGTTTTTACTTTTCTAGGGCTTTTGTATCTACTTGTTTGTGTGATTGGTGCAACTCGTGCAATAAGAAATGATCGTTTCACCACTAAGGATGTTGGTGATGGTTTTGGAATGAGTGGTGGTGATCCGGGACTTATTGGCGGTTTTGGTATTCCCGGGCTAGGGGGTGGACTAGGTAGTAGTGCTCCACTTGGTGGAAACGGACTTAACGGGGGTGGAGGGGTTGGAACTGGACTTGGTGGTGTTGTTGGGGGTGGTCAAGGTGGTATAGGGGGCATGATTCCGGGTGGTGGTGGAGGTGTGGGCCAAGGTGGACCTGGTCTTGGTATGGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATTGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATGGGCCAAGGAGGTGGCCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATTGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATGGGCCAAGGAGGTGGCCCTGGTGGGGGTATGGGTCAAGGAGGCCCTGGTCTTGGTATGGGCCAAGGAGGCGGGCCTGGTGGTGGCATGGGAATGGGTAGTGGCGGTGTTGGTACCCCGGGAGGTATTTTTGGTGGCGCACCTGGCTTTGGCATGGGTTCAAGTGCAGGTGTTGGTGCAGGTATTGGTACAGGTACTCGAATGGGTGGTAGCCTTGGTGGGCCTATTGGAGGGTCAACAGGCATTGGAGGTGGAATAGGTGCTGGAATGGGCGGGAACATGGGTGGTGGTGGGTTGGGTGGGCTACCTGGTCTTGGATCAGGTTTAAGTTCGGGTTTCGGCATAGGAGCTGGGGCTGGGACTAGTACCGGTGTAGGTCCTTTTCCCGGAGGAAACTAACACTACAAACTACATATACGTAGTAGTATATGTGCATGTATTTTTAAAGATATCCTTTAGATTCTTGTTAGGTGCATGAACTGCATGGTAAATTATTAGTTAGTGACCTCTATCTACATGTATGTGTCAGTTAATTTAAACCGTGTTTATTTAGCAGTTTTTAGTCTGATTTTGATGTGTCTAGCAATAATAAGTGTCTTTTGTTGTACGTACTCTAGTACAAATGAAATAATATGTGTTCCATTTACATGTCTATTCCATTTTGATGAGCTATTAACAAATATAAATGGAATTGTATATAAATAAACACCAAATATAGATTTTAAGTAACTCTTAGTAAAGATATGACGTTAATTAATGTAATGTTGTACAACTTTCAGAGTAATTAACTTATTGGGATTATCACGATTCCAATTTTTTTGAAACATCTACACACTTCTTATAGATAGGAGTAACTTATTAATAAGGATCAAAATTTCACAAATGACTAGCTAGGACTTCGTTTAATTTACCATTAGGAAGTTCGACCCAAAATTTAAGTTTATGTCATTTAACAACCATTTTTTCTATATGCAATTAAGTTTTACTCCGATCCGTTAATGACTTAATTGAGAATAGGTGGACCAATTGGTAGTTAGAAAATTTCACCTATATGGGTAATAAATATGCAAAAAACTCAAAAATTAACAAATTTTAATACAAAAGTTTATATTTAATCACATTCAACATTAAATGGGGTATAATCAAAATCAAAATCAAAATCGAATTACACCCAACAACAGTAACAACAATGTGTTTATTTTGTTTAAAGTTAATCATTTCTCATTTATTACTATAAATACAACGATTTTCAATCGATTGGGTCAAATACAGATTCGGTCGATTTTAACCCATTAATACCGGGTTGGTCGGATTCGGATAAAATCGGATTACGGGTAGACAATATATTCTTCAAGACCCAGTGATTTCAGGTCGATTTTGGATTGGGTCGATTTTTAACAGGTTTAGACGGTCTATCGTTGCTATTTTAAAGCTTTTAACGCACATAAAGAATGGAGTTTAGACTCCTTCTTGACTCCCAACAACTTAGACGTATCCACAATCCTACATCAAATCACTCCACCCCTCTTCAGACACCTCCCCTCCCATCATGGTGAGGTAGTTTCCGATCCGCCCCCTCATGGGCCTTCAAACTTAATTTTGATGGTTTATGCAAGTCCGACAAAGTAGCGGCGGACATCATCATGAGAGACAACAACGACATCTCAACTTCAACAATCTCTTTTAATTTGGGTACTACACAATTTTTTATGGCAGAAGCAATGCCATTACATATAGGAATACAAGAAGCAATTCAGCTCAACATCATAAATTTATACATCGAAGGTGACAATCTCCTAGTTATTAATGCATTGAAAAGAATCTGAAAGAGCCCATGGAAACTGCACAATATAGTTAACGATATCAAGATCCTTATTCAAAATTTTCAGAAATTTCATATACAACACATCTTCAGGGAAGCCAATAGGGCAACAGATTGGGTAGCAAATGCCGGCCATCTTATTGTAGATTTTATGCATATCAGTCATTGTAAGCCGCTCCTCTCTCTCCCTCTCCTTTTTCCCTCTTCTCTCTCATCTTTTGGGGTTTCAATTTTCTTGGCCGTTTAGGCCGGAAGTAGTCTAATTTCTTCGGAAATTAGACAATTTCCGACCCTTCTTGCTTTTCATTGTTTTCTTTTCATGTTTTTTCTTATTTTGGTTCTTTTCTGTTGATTTGTTCCCAATGATACCACCAAGCAGGGAAAATTCCAAGGACTCAAATTTTTTTTAAAAATGGATCTTATTATTGGGTTGTTCCCAATTTATTTGGGTTTTTCCTAGATTTTTCTAGGTTCTTGATTCTCATTCATGGATGAGAATTTTTTTGGAGTTTCAATAATTGGGAAGGAGATTTGGATTCATACAGGTTTAGGGTTTATCATCAACTCGTTGATCAGAACAATTCGTGCGCAAATTGCGAAGGGCTCTACTTGGAAAGATATGAAATCATCGAAAATCACTGCTCACGTCAAGCTAGAAGCGGTGGAGTACGAGATGTGCTTTAGGATGCAGAATAGTAATTGTTTTGATTGTAACACTTATGTATTTTCTTTGAATCTGTGGTATGCAGATCTTTTTCATCATTGTAGATGCCGTATGGCTTATTATTAATGGATATTGTTCTTTCCCGTCAAAAAAAGAAGTTGTAATAGTCCTCATTTAGAGTTGTTAGTTAAAAGTGGCTGCTTAGGAGTTACCCTCGTGGGTTGGGCCTCCTAATTTTCTTTTCCTTATCTTTCAAAAATAAAAAAGTTAAAAATGATACGAAAATTGGAAAAAGCTTTAAAACGGGCTCTGTATTAGACAATACTTTGGCCCTTGATGAGTAAGTCATGAATGGATGCTAACTAATTTTGTTGGTAAAGTCTTGAGGGATGATATCCAAGACCTGGGATCGAACACATTTAGGTCAACACAAATTCTTATTTACAAGAGGTGTACAATAAATATTGTACATCGGAGTAAAAGTTGAATCAAAATGTTTAAAAATTACCTTTATATAGGTAAAAGTTATCTATTTTTTAGTGATAAATTTTTGCATTTTAATAAAAATTATTTCTTCAAAATCACTAAATAATGTATAAAATTAATCATTTAACCCCTTAAAATGTTTATCTATCAACTATTTTTTATAAAAGTTATATAAAACTAGATTAAAATTACAAAAAACTGCATAAAAATTATCTTGGTGTACAATAAATTTATTATACAACTTATGCGCGCAAGACCTTTTGCTTTTTGCTACATCAAAGCTTGTTCTTTGTTCTCTCTTTAAAAAAAAAAAAAAAAAAAGGCAAATTTGTTAAAAAGGACCTTTTATAATCCAAATTTTGCGAGAAAGGACCTTATATATTTTTTTTTGTGAAATAACACCTTAATGTAAATTTTTTTGCGAGAAAGGACCTTATATAAATTTTTTTTTGTGAAATCACACATTAATGTAATTTTTTTTGCGAAAGACAACCAAGAGTAAATTTCCGGCATTGACTGAGTTTTTTCCGGCCATTGACTTGCACGTGAGAAGCACGTGTGGCATTATTTTGCTAATCACACCCAATTTTCCTCCAAAATTCTAAGCTTTAAAACCTAAAGTTGAAAAGAAAAACCGAAATAAAATCAAGTTTGAAAATTCAAGAGTCAGGAAAATCATTGTCTTTAGCCAACGTAAGCCACACGTGCTACTCACGTGCAAGTTAATGGCCGAAAAAGCTCAGTCAATGCCGGAAACATTCCTTAGGTCCTTTCTCGCAAAAAAAATTACTTTAAGGTGTGTTTTCACAAAAAAAATTATATAAGGTCCTTTCTCGCAAAATTTGAGTTATAAAAGGTCCTTTTTGACAAATTTGCCAAAAAAAAAAGTCATGACTTTTATGAGTTGATGCCACGTTGCCACTTTGCCACATGCAATACTCGTTGTCTAGTCGGGAATAACATTTCGCGTAATTACAGAATTTACTCAAGACAGCCAAAACACTGTTACTATTATTCAGTTTTCATGGTTTCGGGGTTTGGTTTTTGCCTAATTACGAATAGCGAAGCTGGTTTAGGGTTTGATTCAGCCTCACTTACAAAATTTGAACCTTCGATCTGAGGTAAGATTGTGTTTCTTCGCCATCTTCAGCGACGATTTCAGGTCAATTTTCTGTAATTGTTGAATTTTTTTTCCTGCTTTGTCTCTCTCGTTACTAAGCCCAATCATGGAAGCTGTACAATAGTCAAGAAATTAGAGGACAATTCTAAGACTATGTTTTCCAATTTGTTAGTTATTGTATAGGATGTCGATTAATTTGCTGGTTGTTTGTGTGATTTGTGTATCTTAGGGTTTCAAAACCATAGTAATTTTAAAAGGTATGCTTATTTGGAGTGATTAATCTTGTTGTGTACTACGTACTATTTATCAATTGTATAGAAGTATTCACCTTTTAAAACTGCTTGTTTGCAAGTGTCTATTTTTCGGAGGCGATACTGGTTGTAGACTATTCAAACTGCTTGTATCCATGACTTATGAGTTTTCTTATGTTTTATGTTTGTGCAAACTGCAAAGTGCTTGTTTGAGTTCTATTGTTTTCATCCTCTTCTTAGAGGTTTATGAATTGCATCATTTTCACACGAATATACCCTTCAACAACACAATTTAGACCTCCCAAGAGTCCAAGACCCCCACATGAATTGCAGTTTAGTTACTCCTATTTTCTAACTTCTCGTGTCTAGTTGCGTCCCCTGTTTTGCACTATAGAAAACATGATGTAGATATGCACTATGCCACATTCCAATTTGCATCATTTCTTATTGATAGAAATTTAACATCTTAAATATATGTTTATGATGTATTTGTTGTCTGGAATAACTATGTTATGCCATCGCGTAATCTCGCAAGTGGGTATATACGAAGTACATTAATAGATGTTGGAATTCAATTTGACAACATAGGAAGAATACTCATGAACCAACATAGGGAGTCTCTTTTTGTTTGTCCCATTTGCTATTTTGGTATGTCCCTAAAAGATTTATAAAGCATTTTTAGGACATGGGGCAAACGGACGGAGGGAGTATTACATTTTTAGTTCTCTAAAAAACTAAACGCTCCCCTCACTAACTTTTGTAGACTTGTAGTAGTTCCTTAGTTAATTACTGGCTTACTTGAAAATTCTTGAGATATCTTTTGCTCCTTTGCCTTTTTTCTATCCACCAATAAGTATCCTTACTTGCAGTGCAATACATTGCTTCTCAAAGTAGTTTTCCAACTCCTGGTTGCCAATTTGCAATGCATAAATGTTTGATGTTGTGCTCTTATTTCTAACTTGATTTCAGAACCTTTGGTGTGTATTTATCTTGCAATAG ATGAATGTTAAGGTTTTTACTTTTCTAGGGCTTTTGTATCTACTTGTTTGTGTGATTGGTGCAACTCGTGCAATAAGAAATGATCGTTTCACCACTAAGGATGTTGGTGATGGTTTTGGAATGAGTGGTGGTGATCCGGGACTTATTGGCGGTTTTGGTATTCCCGGGCTAGGGGGTGGACTAGGTAGTAGTGCTCCACTTGGTGGAAACGGACTTAACGGGGGTGGAGGGGTTGGAACTGGACTTGGTGGTGTTGTTGGGGGTGGTCAAGGTGGTATAGGGGGCATGATTCCGGGTGGTGGTGGAGGTGTGGGCCAAGGTGGACCTGGTCTTGGTATGGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATTGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATGGGCCAAGGAGGTGGCCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATTGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATGGGCCAAGGAGGTGGCCCTGGTGGGGGTATGGGTCAAGGAGGCCCTGGTCTTGGTATGGGCCAAGGAGGCGGGCCTGGTGGTGGCATGGGAATGGGTAGTGGCGGTGTTGGTACCCCGGGAGGTATTTTTGGTGGCGCACCTGGCTTTGGCATGGGTTCAAGTGCAGGTGTTGGTGCAGGTATTGGTACAGGTACTCGAATGGGTGGTAGCCTTGGTGGGCCTATTGGAGGGTCAACAGGCATTGGAGGTGGAATAGGTGCTGGAATGGGCGGGAACATGGGTGGTGGTGGGTTGGGTGGGCTACCTGGTCTTGGATCAGGTTTAAGTTCGGGTTTCGGCATAGGAGCTGGGGCTGGGACTAGTACCGGTGGTTTGATTCAGCCTCACTTACAAAATTTGAACCTTCGATCTGAGAACCTTTGGTGTGTATTTATCTTGCAATAG ATGAATGTTAAGGTTTTTACTTTTCTAGGGCTTTTGTATCTACTTGTTTGTGTGATTGGTGCAACTCGTGCAATAAGAAATGATCGTTTCACCACTAAGGATGTTGGTGATGGTTTTGGAATGAGTGGTGGTGATCCGGGACTTATTGGCGGTTTTGGTATTCCCGGGCTAGGGGGTGGACTAGGTAGTAGTGCTCCACTTGGTGGAAACGGACTTAACGGGGGTGGAGGGGTTGGAACTGGACTTGGTGGTGTTGTTGGGGGTGGTCAAGGTGGTATAGGGGGCATGATTCCGGGTGGTGGTGGAGGTGTGGGCCAAGGTGGACCTGGTCTTGGTATGGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATTGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATGGGCCAAGGAGGTGGCCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATTGGCCAAGGAGGTGGGCCTGGTGGGGGTATGGGTCAAGGTGGCCCTGGTTTTGGTATGGGCCAAGGAGGTGGCCCTGGTGGGGGTATGGGTCAAGGAGGCCCTGGTCTTGGTATGGGCCAAGGAGGCGGGCCTGGTGGTGGCATGGGAATGGGTAGTGGCGGTGTTGGTACCCCGGGAGGTATTTTTGGTGGCGCACCTGGCTTTGGCATGGGTTCAAGTGCAGGTGTTGGTGCAGGTATTGGTACAGGTACTCGAATGGGTGGTAGCCTTGGTGGGCCTATTGGAGGGTCAACAGGCATTGGAGGTGGAATAGGTGCTGGAATGGGCGGGAACATGGGTGGTGGTGGGTTGGGTGGGCTACCTGGTCTTGGATCAGGTTTAAGTTCGGGTTTCGGCATAGGAGCTGGGGCTGGGACTAGTACCGGTGGTTTGATTCAGCCTCACTTACAAAATTTGAACCTTCGATCTGAGAACCTTTGGTGTGTATTTATCTTGCAATAG MNVKVFTFLGLLYLLVCVIGATRAIRNDRFTTKDVGDGFGMSGGDPGLIGGFGIPGLGGGLGSSAPLGGNGLNGGGGVGTGLGGVVGGGQGGIGGMIPGGGGGVGQGGPGLGMGQGGGPGGGMGQGGPGFGIGQGGGPGGGMGQGGPGFGMGQGGGPGGGMGQGGPGFGIGQGGGPGGGMGQGGPGFGMGQGGGPGGGMGQGGPGLGMGQGGGPGGGMGMGSGGVGTPGGIFGGAPGFGMGSSAGVGAGIGTGTRMGGSLGGPIGGSTGIGGGIGAGMGGNMGGGGLGGLPGLGSGLSSGFGIGAGAGTSTGGLIQPHLQNLNLRSENLWCVFILQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09476.1 vs. NCBI nr
Match: gi|902143929|gb|KNA04885.1| (hypothetical protein SOVF_195550 [Spinacia oleracea]) HSP 1 Score: 395.6 bits (1015), Expect = 8.700e-107 Identity = 273/312 (87.50%), Postives = 273/312 (87.50%), Query Frame = 1
BLAST of Spo09476.1 vs. NCBI nr
Match: gi|731372055|ref|XP_010666231.1| (PREDICTED: glycine-rich cell wall structural protein-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 126.7 bits (317), Expect = 7.600e-26 Identity = 165/316 (52.22%), Postives = 181/316 (57.28%), Query Frame = 1
BLAST of Spo09476.1 vs. NCBI nr
Match: gi|870842970|gb|KMS96251.1| (hypothetical protein BVRB_000580 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 126.7 bits (317), Expect = 7.600e-26 Identity = 165/316 (52.22%), Postives = 181/316 (57.28%), Query Frame = 1
BLAST of Spo09476.1 vs. NCBI nr
Match: gi|326510971|dbj|BAJ91833.1| (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 78.6 bits (192), Expect = 2.400e-11 Identity = 161/285 (56.49%), Postives = 181/285 (63.51%), Query Frame = 1
BLAST of Spo09476.1 vs. NCBI nr
Match: gi|1000947283|ref|XP_015580635.1| (PREDICTED: glycine-rich cell wall structural protein [Ricinus communis]) HSP 1 Score: 77.4 bits (189), Expect = 5.300e-11 Identity = 164/313 (52.40%), Postives = 195/313 (62.30%), Query Frame = 1
BLAST of Spo09476.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QC98_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_195550 PE=4 SV=1) HSP 1 Score: 395.6 bits (1015), Expect = 6.100e-107 Identity = 273/312 (87.50%), Postives = 273/312 (87.50%), Query Frame = 1
BLAST of Spo09476.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5H1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_000580 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 5.300e-26 Identity = 165/316 (52.22%), Postives = 181/316 (57.28%), Query Frame = 1
BLAST of Spo09476.1 vs. UniProtKB/TrEMBL
Match: M1CWE2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029635 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.900e-12 Identity = 163/286 (56.99%), Postives = 179/286 (62.59%), Query Frame = 1
BLAST of Spo09476.1 vs. UniProtKB/TrEMBL
Match: F2D9R2_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.600e-11 Identity = 161/285 (56.49%), Postives = 181/285 (63.51%), Query Frame = 1
BLAST of Spo09476.1 vs. UniProtKB/TrEMBL
Match: A0A103XRE9_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_002435 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 3.700e-11 Identity = 161/313 (51.44%), Postives = 187/313 (59.74%), Query Frame = 1
BLAST of Spo09476.1 vs. ExPASy Swiss-Prot
Match: GRP1_ARATH (Glycine-rich cell wall structural protein OS=Arabidopsis thaliana GN=At3g17050 PE=3 SV=2) HSP 1 Score: 64.7 bits (156), Expect = 2.200e-9 Identity = 164/314 (52.23%), Postives = 180/314 (57.32%), Query Frame = 1
BLAST of Spo09476.1 vs. ExPASy Swiss-Prot
Match: GRP1_PETHY (Glycine-rich cell wall structural protein 1 OS=Petunia hybrida GN=GRP-1 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.900e-9 Identity = 149/282 (52.84%), Postives = 163/282 (57.80%), Query Frame = 1
BLAST of Spo09476.1 vs. TAIR (Arabidopsis)
Match: AT3G23450.1 (unknown protein) HSP 1 Score: 77.0 bits (188), Expect = 2.400e-14 Identity = 161/288 (55.90%), Postives = 189/288 (65.62%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09476.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09476.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09476.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo09476.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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