Spo09487 (gene) | SpinachBase

Overview


Name	Spo09487
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 94655857 .. 94658267 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATCTAAAACTCATACAAAAATTATCCACAAATATATCCAAAAAAAAACTGAGGTGGCTGGTCTTCCTCTATGAGCTGCATTCATAGTCATTCTCCATCCCTTCACTTGCTTAACCTGCAAAAGCATAAACAAAATGCTGAAAAATCAACCAATTTACAATATGGGTTTTTCTCCAGCTACTCAGCAAAGAGGCACTGTAACATTATATCCAAAGTTGCAGTTTTACCTTTGAATGTAGAAACTTTTCATACTTCTCTCACACTTGCTGTTGCTAAACCTGCTAATACTGAAGTTCTGTTCCAAACCAGGTTTGTTTCTCTTTTTACCCTTCGATCTCTTTCATTCAAGTATTTTTTTTTTTTTGTTCTACTATGAGGAGTTCCCACCGCCTTCGCCGTGTGGACTAATCTCCCGTACCTCGATGGGCAGCATCCCTCCCGGTTGAGATTTTTTCCATTCTCAAGGCTCAAATCCGAGACCTTGGTTAAGGAGCAAGAAGCTTTTAACCACTCATGCCAACCTCCATTGATTTTTATTCAAGTATTTGATAGTGTATTTGATAGTGTATTTGGTTGACGGTAATATATGATACAATGGTTAATTGTAATGAATTTGTGTAGTTTTGAAATAAAGTCACAAATATGTGTAGTATATACACTTTATGAAAGCAAACACATAATTGAAAGTAATGTTTTTACAGCCATTGACTTGAAATTTTGTTTATAAATTATACACCTCTGTCTCTTTTTGTTTTTTACGTTTTGTATTTTTCACGCGTTTTAACGAATAATTAATTTGCATTGAAATCCCTCAATTTTTTTATTTAAACGAAATAAATTACGTTGATTTATAATGTTTTCACTTTTATCAAAATTCTGATATTGGGAAATGAAAAAAAAATTAAAGTCCCAATGGAAAAGTGTGAGAGATTAAATGACCCAATGAATTTGATTGGTTAAAATAATAATTGGACACAAATTTTGATAGAATACTAAGTTATTTATGTGATAATATAAAAGGAAATGTAAAGAACATTTTAAAATACCAAAAAAAGGAAAACGTAAAAAACAAAAAGAGACGGATGGAGTAAAAATTTATTACCATTATTAATCTCATAATCTCATTTATTATTGCCTATCAAATGAGTTGTTATTGTCATGCATCACACATATAACACATTTATCTTCGATGCATGAGTAATTAAGAAAAATGATTAAAATTTAAAATCAATTGTTCGTGATAAGTGATAAAGGTCACATCACATGTTAATATGTTATTACTGAATTCTTTTGTTTCATAATCCAAAGTACAGTGGATATCAACTAGCTTAGTTGGTAAAGTTTTGAGAGGTAATACTTGTACCCAAGATCTGGGATTGAATCCCATCTACACCAGTTATCACCTTGCATTTTGTGCCCTCTCTACACCAAAAAAAAAAAAAAAATTAAAAAGTACAATGTACGGAGTAGATTTTTTTCATAAGACCTAGCTAGCAACATAATTGTAACTTGTAAGTAAATACATAATGATATACTTCAATCATCTAAGACATGCTTCTGGGTTCTAATGCTGCTCGTTCAATTTGTAGTGCACTGCTGATCTTCTTCTACTTGGTAGCCAATTTTGTGGTACCACAACTTATAACGAAAGGGTTTGGTGGCGAAGGGGATGAAAACGAGAAGCCTAACAACTCCGACTCTGTGGACGAGCTGAAAGTGAGCTCAACAGCAACGAAGCGTGGTTTTAACAACAACAAACTGAAATAAGAGGAAGCATTTTCGCATATCAGCTGATGTGTGCTTGCAAATACCTATCATAGCAAAAAAGCAAAATAGAAAAAAAAAATAAAAAAAAAATTGGATGGTACTTTTTTAAACAAAAATTGTACTTTTTTTTTCTTCTGTTGAATGGTACTTTGTTTTTTTTTTTTAATATGAATGGTACTTTCTTTTTCCCCTATTTTGTCTTTTAACTATTTGTCTTTTGCCACACATATCAAACATCCGAAAATACTTCTTCAAATAAGCATACTTTTACATGCTCTTATATATGAGCAATATTATCCAGTATGAAGTATTTATTAGGATGTGTGAATCTTTATACTTGTATGGCAGCAGCGGCAACAGTACAACTAGAGAAATTCAGAACATAAACAAGAAAACATCTTAGCTAATTCTTGAATATCAAAATATTTTCCATTTCTATAATGTTCTGTACGACTGTACCCGAACACAAAAAAATAATTACAATATTGTCCATGGAAATTTTGATGGACTAATAACTCTATCTAATTTACAATTGATTATAACGTAAAAACAAAAAAACAAAAAAAAAAGTTCTTCAAACAACTGTCCAATCATTTTCATCTAAACCAGATGAGTTGTTGGCTGGGGGTTGTGTGTTTTCAG

mRNA sequence

ATTATCTAAAACTCATACAAAAATTATCCACAAATATATCCAAAAAAAAACTGAGGTGGCTGGTCTTCCTCTATGAGCTGCATTCATAGTCATTCTCCATCCCTTCACTTGCTTAACCTGCAAAAGCATAAACAAAATGCTGAAAAATCAACCAATTTACAATATGGGTTTTTCTCCAGCTACTCAGCAAAGAGGCACTGTAACATTATATCCAAAGTTGCAGTTTTACCTTTGAATGTAGAAACTTTTCATACTTCTCTCACACTTGCTGTTGCTAAACCTGCTAATACTGAAGTTCTGTTCCAAACCAGTGCACTGCTGATCTTCTTCTACTTGGTAGCCAATTTTGTGGTACCACAACTTATAACGAAAGGGTTTGGTGGCGAAGGGGATGAAAACGAGAAGCCTAACAACTCCGACTCTGTGGACGAGCTGAAAGTGAGCTCAACAGCAACGAAGCGTGGTTTTAACAACAACAAACTGAAATAAGAGGAAGCATTTTCGCATATCAGCTGATGTGTGCTTGCAAATACCTATCATAGCAAAAAAGCAAAATAGAAAAAAAAAATAAAAAAAAAATTGGATGGTACTTTTTTAAACAAAAATTGTACTTTTTTTTTCTTCTGTTGAATGGTACTTTGTTTTTTTTTTTTAATATGAATGGTACTTTCTTTTTCCCCTATTTTGTCTTTTAACTATTTGTCTTTTGCCACACATATCAAACATCCGAAAATACTTCTTCAAATAAGCATACTTTTACATGCTCTTATATATGAGCAATATTATCCAGTATGAAGTATTTATTAGGATGTGTGAATCTTTATACTTGTATGGCAGCAGCGGCAACAGTACAACTAGAGAAATTCAGAACATAAACAAGAAAACATCTTAGCTAATTCTTGAATATCAAAATATTTTCCATTTCTATAATGTTCTGTACGACTGTACCCGAACACAAAAAAATAATTACAATATTGTCCATGGAAATTTTGATGGACTAATAACTCTATCTAATTTACAATTGATTATAACGTAAAAACAAAAAAACAAAAAAAAAAGTTCTTCAAACAACTGTCCAATCATTTTCATCTAAACCAGATGAGTTGTTGGCTGGGGGTTGTGTGTTTTCAG

Coding sequence (CDS)

ATGAGCTGCATTCATAGTCATTCTCCATCCCTTCACTTGCTTAACCTGCAAAAGCATAAACAAAATGCTGAAAAATCAACCAATTTACAATATGGGTTTTTCTCCAGCTACTCAGCAAAGAGGCACTGTAACATTATATCCAAAGTTGCAGTTTTACCTTTGAATGTAGAAACTTTTCATACTTCTCTCACACTTGCTGTTGCTAAACCTGCTAATACTGAAGTTCTGTTCCAAACCAGTGCACTGCTGATCTTCTTCTACTTGGTAGCCAATTTTGTGGTACCACAACTTATAACGAAAGGGTTTGGTGGCGAAGGGGATGAAAACGAGAAGCCTAACAACTCCGACTCTGTGGACGAGCTGAAAGTGAGCTCAACAGCAACGAAGCGTGGTTTTAACAACAACAAACTGAAATAA

Protein sequence

MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFHTSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDELKVSSTATKRGFNNNKLK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo09487.1	Spo09487.1	mRNA

Homology

[Close]

BLAST of Spo09487.1 vs. NCBI nr
Match: gi|902210829|gb|KNA16546.1| (hypothetical protein SOVF_088300 [Spinacia oleracea])

HSP 1 Score: 268.5 bits (685), Expect = 6.600e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1

		  
Query: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60
           MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH
Sbjct: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60

Query: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE 120
           TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE
Sbjct: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE 120

Query: 121 LKVSSTATKRGFNNNKLK 139
           LKVSSTATKRGFNNNKLK
Sbjct: 121 LKVSSTATKRGFNNNKLK 138

[Close]

BLAST of Spo09487.1 vs. NCBI nr
Match: gi|731371959|ref|XP_010666203.1| (PREDICTED: uncharacterized protein LOC104883384 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 133.3 bits (334), Expect = 3.300e-28
Identity = 82/139 (58.99%), Postives = 96/139 (69.06%), Query Frame = 1

		  
Query: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60
           MSCIH +SPSLHLL LQKH+ NA   T L +  FS  S  +H    S++ VLPL VE F 
Sbjct: 1   MSCIHCYSPSLHLLTLQKHRHNARIPTKLSW-LFSGNSTNKHFK--SQIGVLPLKVEDFP 60

Query: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGE-GDENEKPNNSDSVD 120
           T  TL VAKPANT VL QTSA++IFFYL+ANFVVP  I+K F  E  DENEKPN ++ VD
Sbjct: 61  T-FTLVVAKPANTTVLIQTSAVMIFFYLIANFVVPLFISKEFESEKEDENEKPNITNPVD 120

Query: 121 ELKVSSTATKRGFNNNKLK 139
           + K SS   KRGFN+ K K
Sbjct: 121 KGKSSSKTGKRGFNSTKPK 135

[Close]

BLAST of Spo09487.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAM4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088300 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.600e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1

		  
Query: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60
           MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH
Sbjct: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60

Query: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE 120
           TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE
Sbjct: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE 120

Query: 121 LKVSSTATKRGFNNNKLK 139
           LKVSSTATKRGFNNNKLK
Sbjct: 121 LKVSSTATKRGFNNNKLK 138

[Close]

BLAST of Spo09487.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B4W2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_000610 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.300e-28
Identity = 82/139 (58.99%), Postives = 96/139 (69.06%), Query Frame = 1

		  
Query: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60
           MSCIH +SPSLHLL LQKH+ NA   T L +  FS  S  +H    S++ VLPL VE F 
Sbjct: 1   MSCIHCYSPSLHLLTLQKHRHNARIPTKLSW-LFSGNSTNKHFK--SQIGVLPLKVEDFP 60

Query: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGE-GDENEKPNNSDSVD 120
           T  TL VAKPANT VL QTSA++IFFYL+ANFVVP  I+K F  E  DENEKPN ++ VD
Sbjct: 61  T-FTLVVAKPANTTVLIQTSAVMIFFYLIANFVVPLFISKEFESEKEDENEKPNITNPVD 120

Query: 121 ELKVSSTATKRGFNNNKLK 139
           + K SS   KRGFN+ K K
Sbjct: 121 KGKSSSKTGKRGFNSTKPK 135

The following BLAST results are available for this feature:

BLAST of Spo09487.1 vs. NCBI nr
BLAST of Spo09487.1 vs. UniProtKB/TrEMBL
BLAST of Spo09487.1 vs. ExPASy Swiss-Prot
BLAST of Spo09487.1 vs. TAIR (Arabidopsis)

BLAST of Spo09487.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902210829\|gb\|KNA16546.1\|	6.6e-69	100.	hypothetical protein SOVF_0883...	[more]
gi\|731371959\|ref\|XP_010666203.1\|	3.3e-28	58.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo09487.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RAM4_SPIOL	4.6e-69	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B4W2_BETVU	2.3e-28	58.9	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo09487.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo09487.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0046835	carbohydrate phosphorylation
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0006014	D-ribose metabolic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0042793	plastid transcription
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0051604	protein maturation
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0006167	AMP biosynthetic process
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009108	coenzyme biosynthetic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009106	lipoate metabolic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006412	translation
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0009536	plastid
cellular_component	GO:0016020	membrane
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0000906	6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004747	ribokinase activity
molecular_function	GO:0004001	adenosine kinase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0047134	protein-disulfide reductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15389	0.78	Barchart \| Table
Spo25773	0.77	Barchart \| Table
Spo26644	0.74	Barchart \| Table
Spo24633	0.73	Barchart \| Table
Spo02751	0.73	Barchart \| Table
Spo06060	0.70	Barchart \| Table
Spo09340	0.70	Barchart \| Table
Spo23249	0.69	Barchart \| Table
Spo07806	0.68	Barchart \| Table
Spo22999	0.68	Barchart \| Table
Spo04377	0.68	Barchart \| Table
Spo01059	0.68	Barchart \| Table
Spo15390	0.68	Barchart \| Table
Spo18000	0.68	Barchart \| Table
Spo05115	0.67	Barchart \| Table
Spo21808	0.67	Barchart \| Table
Spo05078	0.67	Barchart \| Table
Spo03785	0.67	Barchart \| Table
Spo11445	0.66	Barchart \| Table
Spo03139	0.66	Barchart \| Table
Spo10106	0.66	Barchart \| Table
Spo11221	0.66	Barchart \| Table
Spo00921	0.66	Barchart \| Table
Spo24054	0.66	Barchart \| Table
Spo24805	0.65	Barchart \| Table
Spo21757	0.65	Barchart \| Table