Spo09664 (gene)

Overview
NameSpo09664
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTrihelix transcription factor GT-3b (Transcription factor GT-1-like) (Trihelix DNA-binding protein GT-3b)
LocationSpoScf_01972 : 27941 .. 30209 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTTCTTCACCTTTTCTATTTACCTTGAAATCACCCCTTTCTTCTGGGATTTTATGTATATTTTTTTTGATTTGAACTGAAAATTTCGTTGATAAATTAGGTTATTATGTATTCAATTTATCTGTCGAAATTTTCAATTGTCTATTCATCTCTGTTGATAAATTTGGGTTAGTTATTTTTTTTTCAATTGTCTATTCATCTTTGTTGTATGAATTTTTGTCATAAATTCTGATTCTTCAAATTTGAGAAATTGTAAGTTTGGTTTTATAATTTTCCCCCAATTATCTGTTCGTAGGGATAGGTGCATTATTTTTTCACTCCTGATCTTTATTTGTTTTAATTTCTAATTAAATCAACTAACGAATAATGCTACAGAAAATACAGTGCTATAGAAAATACTGCCATTACTGAGATGGGTAGCAAAATATAGCAATAAGATTCTAGAGTACCCAAAAGGGGAGTAAGGAGGGGGTGAAAAGCATTACTGTTGAAACTGAATTTCTACTTTCGATTCTTTTTTTAGCTTGTACTCCAATTGTGTGCATTGTCTTTTGTTGGCTATTGTGCTCAACGTATGCAGGCTATCAAGAGAAAGGCCATGAACATAGAATATGAGATGGCCATGAACATAGAATATGAGATGGCCATGAACATAGAACATAACAGCAATTTTGAGGTTGATGAACATAATAGCAAGTAGTGAACTCGATAGACTCCTTAGAAAGGTTGATGATGCTACTTCTACTTCTAATGTGGAAGCAGAGTCTACTACAGATTCTGAAGATTCAGATGGTTTGCTAGAAAAAATGGTGAAGTTTCTAGTTTGCTGGAGGAATCTATAGACAAAAGAGGACCTGTGGAAATTAACGAAGAGGAATCTGACGAGACACTGAATCGTTCCTCAAAGCGTTCAGAGTCAATGATACTGAATAAATGGAAGCCTGAAGAGGTTAAGAAGTTGATTATGCTTCATGGAGATTTGCATGAGAGATTCCAGGTTGTAAGAAGATGTATGGCACTCTGGGAAGAGATATCATCAAGCCTTGTAGCTGATGGCTTCAATCGGACACCTGGACAATGCAAATCCTTGTGGGCTTCTCTGGTCCAAAAATACGAGGTCAGTTCTTACTTCTTCGACAACATTATGTTCAGTGTTCTCCGTCTTTTCTGCAGTAGCATATTAAAGAAAAGTATGCCTTCGGGTGAAACTGTGTTAGACTAATTTTATTGTGAGAATTAAAAGTTAACTCAAATAAATTCAGAAGTGATCATAGTCTCACTATTAGTTACCGTTAGATAGTCTCATTTAATGTTACATAGTTCCCTAATCATCCCACGAACCACAAACTGAAAAGGCGGATTATAACATGAAAATGTTACATTTTTGTCTAATTTAGCAAATTAGTTAGCGAATTACGAACCCGTACCCAATCTTATACTAGTGAATCAGGTAACAATGGTCTCATTCAAGACTATTTCATTAAGGAAATGAGTAGGTGTAGACAAACATTACCATGAGTGTGTTATTGTGGAAACAAGGAGTTAAGGACCCTTTCTTTAGTGATAGATGCTTACTTTTCCCTGAAGCTCTTAGCCTGTCTGTAACTGTACCTCCTTTTGGTGTCAAATTGTTCTTATATTTTAAATTACCTATTGTTGGTGACAAATGAATTGTTCTCGTGTTTAGAACTTATCGGACTTGGAAAGCCAACAACAAAGGATCTTGAAAGTCTCTAAGATGGAAATAAATTACAGTAAGAATTTAATTAGTTTGATTATTATTTTTATCGTAATTTTATTCATATATATGTTAATATTTAATTTAATATGTATTATATTTGTGTTTTAGTGTTCCCGGGAACTGAAAATGCTTGAATGTGGCTATTACGTCGTGAAGTACATGGATCAAATAGTTTTACTTGGGATTACAAAGTATTGGTAATCTGGAAGAGGTACGTGCATTTTTGTTATTTTAGTTAATTTTATCTCAGTTTTAACTATGCGATAGCTTTTATCCAAACTTTACTAATTATATATATACATTGTTGTGTTGAAGTACAAATTTTTCTCCAAACCCGTACACTCAAGAAGAGATCGATGAAGTTCGGGAAAAGAGCAGATATTTTATTAGTAGTTGTTTGTAGTCATTTTCTAGTTTTCAGAGATAGAAAACTATAAGAAATTGTGGTTAAGTTTTTGGAATACATATTTGTTGAACCAACTTTCTTGTTTGAATTAATAAAAAATCTTTTTGCAATTCTGC

mRNA sequence

ATGGAGCTTGTACTCCAATTGTGTGCATTGTCTTTTGTTGGCTATTGTGCTCAACGTATGCAGGCTATCAAGAGAAAGGCCATGAACATAGAATATGAGATGGCCATGAACATAGAATATGAGATGGCCATGAACATAGAACATAACAGCAATTTTGAGGTTGATGAACATAATAGCAAATGGTTTGCTAGAAAAAATGGTGAAGTTTCTAGTTTGCTGGAGGAATCTATAGACAAAAGAGGACCTGTGGAAATTAACGAAGAGGAATCTGACGAGACACTGAATCGTTCCTCAAAGCGTTCAGAGTCAATGATACTGAATAAATGGAAGCCTGAAGAGGTTAAGAAGTTGATTATGCTTCATGGAGATTTGCATGAGAGATTCCAGGTTGTAAGAAGATGTATGGCACTCTGGGAAGAGATATCATCAAGCCTTGTAGCTGATGGCTTCAATCGGACACCTGGACAATGCAAATCCTTGTGGGCTTCTCTGGTCCAAAAATACGAGTGTTCCCGGGAACTGAAAATGCTTGAATGTGGCTATTACGTCGTGAAGTACATGGATCAAATAGTTTTACTTGGGATTACAAAGTATTGGTAATCTGGAAGAGGTACGTGCATTTTTGTTATTTTAGTTAATTTTATCTCAGTTTTAACTATGCGATAGCTTTTATCCAAACTTTACTAATTATATATATACATTGTTGTGTTGAAGTACAAATTTTTCTCCAAACCCGTACACTCAAGAAGAGATCGATGAAGTTCGGGAAAAGAGCAGATATTTTATTAGTAGTTGTTTGTAGTCATTTTCTAGTTTTCAGAGATAGAAAACTATAAGAAATTGTGGTTAAGTTTTTGGAATACATATTTGTTGAACCAACTTTCTTGTTTGAATTAATAAAAAATCTTTTTGCAATTCTGC

Coding sequence (CDS)

ATGGAGCTTGTACTCCAATTGTGTGCATTGTCTTTTGTTGGCTATTGTGCTCAACGTATGCAGGCTATCAAGAGAAAGGCCATGAACATAGAATATGAGATGGCCATGAACATAGAATATGAGATGGCCATGAACATAGAACATAACAGCAATTTTGAGGTTGATGAACATAATAGCAAATGGTTTGCTAGAAAAAATGGTGAAGTTTCTAGTTTGCTGGAGGAATCTATAGACAAAAGAGGACCTGTGGAAATTAACGAAGAGGAATCTGACGAGACACTGAATCGTTCCTCAAAGCGTTCAGAGTCAATGATACTGAATAAATGGAAGCCTGAAGAGGTTAAGAAGTTGATTATGCTTCATGGAGATTTGCATGAGAGATTCCAGGTTGTAAGAAGATGTATGGCACTCTGGGAAGAGATATCATCAAGCCTTGTAGCTGATGGCTTCAATCGGACACCTGGACAATGCAAATCCTTGTGGGCTTCTCTGGTCCAAAAATACGAGTGTTCCCGGGAACTGAAAATGCTTGAATGTGGCTATTACGTCGTGAAGTACATGGATCAAATAGTTTTACTTGGGATTACAAAGTATTGGTAA

Protein sequence

MELVLQLCALSFVGYCAQRMQAIKRKAMNIEYEMAMNIEYEMAMNIEHNSNFEVDEHNSKWFARKNGEVSSLLEESIDKRGPVEINEEESDETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVADGFNRTPGQCKSLWASLVQKYECSRELKMLECGYYVVKYMDQIVLLGITKYW
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo09664.1Spo09664.1mRNA


Homology
[Close]
BLAST of Spo09664.1 vs. NCBI nr
Match: gi|902177581|gb|KNA08975.1| (hypothetical protein SOVF_157870 [Spinacia oleracea])

HSP 1 Score: 186.8 bits (473), Expect = 3.700e-44
Identity = 101/147 (68.71%), Postives = 116/147 (78.91%), Query Frame = 1 

		  

Query: 45  NIEHNSNFEVDEHNSKWFARKNGEVSSLLEESIDKRGPVEINEEESDETLNRSSKRSESM 104
           N+E  S  E ++  S     KNGEVSSL+EESID+ GPVEINEEE DET+NRSSKRS++ 
Sbjct: 723 NVEAGSTTESED--SDGLLEKNGEVSSLVEESIDRSGPVEINEEEPDETVNRSSKRSKAT 782

Query: 105 ILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVADGFNRTPGQCKSLWASL 164
           I NKWKPEEVKKLIML GDLHERFQVV+  MALWEEISSSLVADGFNRTPGQCKSLWASL
Sbjct: 783 IRNKWKPEEVKKLIMLRGDLHERFQVVKGRMALWEEISSSLVADGFNRTPGQCKSLWASL 842

Query: 165 VQKYECSRELKMLECGYYVVKYMDQIV 192
           VQKYE S+  +  +  +     MD+I+
Sbjct: 843 VQKYEESKSDEKSQKSWPYYTKMDKIL 867
[Close]
BLAST of Spo09664.1 vs. NCBI nr
Match: gi|731333766|ref|XP_010677898.1| (PREDICTED: uncharacterized protein LOC104893494 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 149.4 bits (376), Expect = 6.500e-33
Identity = 84/161 (52.17%), Postives = 109/161 (67.70%), Query Frame = 1 

		  

Query: 43  AMNIEHNSNFEVDEHNSKWFA------------RKNGEVSSLLEESIDKRGPVEINEEES 102
           A +IE +S+ E +  +  W +             + GE+S+LLEE  D+    E+N++ES
Sbjct: 717 ASDIEESSSAESENSDGIWKSFTGLSTLPTGKQEERGEISTLLEEYADRSRGGEVNKDES 776

Query: 103 DETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVADGF 162
           DE    S+KRS+S   NKWKPEEVKKLIML G+LH+RFQVV+  MALWEEISSSL+ DGF
Sbjct: 777 DEESKHSTKRSKSTTRNKWKPEEVKKLIMLRGELHDRFQVVKGRMALWEEISSSLLNDGF 836

Query: 163 NRTPGQCKSLWASLVQKYECSRELKMLECGYYVVKYMDQIV 192
           NRTPGQCKSLWASLVQKYE S+  +  +  +   + MD I+
Sbjct: 837 NRTPGQCKSLWASLVQKYEESKSDEKSKKSWPHYQEMDTIL 877
[Close]
BLAST of Spo09664.1 vs. NCBI nr
Match: gi|731333768|ref|XP_010677899.1| (PREDICTED: uncharacterized protein LOC104893494 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 149.4 bits (376), Expect = 6.500e-33
Identity = 84/161 (52.17%), Postives = 109/161 (67.70%), Query Frame = 1 

		  

Query: 43  AMNIEHNSNFEVDEHNSKWFA------------RKNGEVSSLLEESIDKRGPVEINEEES 102
           A +IE +S+ E +  +  W +             + GE+S+LLEE  D+    E+N++ES
Sbjct: 571 ASDIEESSSAESENSDGIWKSFTGLSTLPTGKQEERGEISTLLEEYADRSRGGEVNKDES 630

Query: 103 DETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVADGF 162
           DE    S+KRS+S   NKWKPEEVKKLIML G+LH+RFQVV+  MALWEEISSSL+ DGF
Sbjct: 631 DEESKHSTKRSKSTTRNKWKPEEVKKLIMLRGELHDRFQVVKGRMALWEEISSSLLNDGF 690

Query: 163 NRTPGQCKSLWASLVQKYECSRELKMLECGYYVVKYMDQIV 192
           NRTPGQCKSLWASLVQKYE S+  +  +  +   + MD I+
Sbjct: 691 NRTPGQCKSLWASLVQKYEESKSDEKSKKSWPHYQEMDTIL 731
[Close]
BLAST of Spo09664.1 vs. NCBI nr
Match: gi|566197680|ref|XP_002318122.2| (hypothetical protein POPTR_0012s09780g [Populus trichocarpa])

HSP 1 Score: 117.1 bits (292), Expect = 3.600e-23
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1 

		  

Query: 67  GEVSSLLEESIDKRGPVEINEEESDETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHE 126
           GE  + L+E +     ++ ++++  E  N   KRS+S+  NKWKPEEVK LI + G+LH 
Sbjct: 788 GEQMNKLKEDV-----MDSSDDDLLENENSRLKRSKSVKRNKWKPEEVKSLIKMRGELHS 847

Query: 127 RFQVVRRCMALWEEISSSLVADGFNRTPGQCKSLWASLVQKYECSRELKMLECGYYVVKY 186
           RFQVVR  MALWEEIS++L+ADG NR+PGQCKSLW SLVQKYE S+  K  +  +   + 
Sbjct: 848 RFQVVRGRMALWEEISTNLMADGINRSPGQCKSLWTSLVQKYEESKNGKKGKKAWPYFED 907

Query: 187 MDQIV 192
           MD I+
Sbjct: 908 MDNIL 907
[Close]
BLAST of Spo09664.1 vs. NCBI nr
Match: gi|449440566|ref|XP_004138055.1| (PREDICTED: uncharacterized protein LOC101215740 isoform X2 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 7.900e-23
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 1 

		  

Query: 84  EINEEESDETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISS 143
           E+++++S +T N     S+ +  NKWKPEE+KKLI L G+LH+RFQV R  MALWEEIS+
Sbjct: 793 EVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGELHDRFQVARGRMALWEEISN 852

Query: 144 SLVADGFNRTPGQCKSLWASLVQKYECSRELKMLECGYYVVKYMDQIV 192
            + ADG NR+PGQCKSLWASLVQK+E S+  K  + G+  ++ M  I+
Sbjct: 853 GMSADGINRSPGQCKSLWASLVQKFEESKSEKKSKKGWPYLEEMSGIL 900
[Close]
BLAST of Spo09664.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QP06_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157870 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.500e-44
Identity = 101/147 (68.71%), Postives = 116/147 (78.91%), Query Frame = 1 

		  

Query: 45  NIEHNSNFEVDEHNSKWFARKNGEVSSLLEESIDKRGPVEINEEESDETLNRSSKRSESM 104
           N+E  S  E ++  S     KNGEVSSL+EESID+ GPVEINEEE DET+NRSSKRS++ 
Sbjct: 723 NVEAGSTTESED--SDGLLEKNGEVSSLVEESIDRSGPVEINEEEPDETVNRSSKRSKAT 782

Query: 105 ILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVADGFNRTPGQCKSLWASL 164
           I NKWKPEEVKKLIML GDLHERFQVV+  MALWEEISSSLVADGFNRTPGQCKSLWASL
Sbjct: 783 IRNKWKPEEVKKLIMLRGDLHERFQVVKGRMALWEEISSSLVADGFNRTPGQCKSLWASL 842

Query: 165 VQKYECSRELKMLECGYYVVKYMDQIV 192
           VQKYE S+  +  +  +     MD+I+
Sbjct: 843 VQKYEESKSDEKSQKSWPYYTKMDKIL 867
[Close]
BLAST of Spo09664.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGG6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g110480 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.500e-33
Identity = 84/161 (52.17%), Postives = 109/161 (67.70%), Query Frame = 1 

		  

Query: 43  AMNIEHNSNFEVDEHNSKWFA------------RKNGEVSSLLEESIDKRGPVEINEEES 102
           A +IE +S+ E +  +  W +             + GE+S+LLEE  D+    E+N++ES
Sbjct: 717 ASDIEESSSAESENSDGIWKSFTGLSTLPTGKQEERGEISTLLEEYADRSRGGEVNKDES 776

Query: 103 DETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVADGF 162
           DE    S+KRS+S   NKWKPEEVKKLIML G+LH+RFQVV+  MALWEEISSSL+ DGF
Sbjct: 777 DEESKHSTKRSKSTTRNKWKPEEVKKLIMLRGELHDRFQVVKGRMALWEEISSSLLNDGF 836

Query: 163 NRTPGQCKSLWASLVQKYECSRELKMLECGYYVVKYMDQIV 192
           NRTPGQCKSLWASLVQKYE S+  +  +  +   + MD I+
Sbjct: 837 NRTPGQCKSLWASLVQKYEESKSDEKSKKSWPHYQEMDTIL 877
[Close]
BLAST of Spo09664.1 vs. UniProtKB/TrEMBL
Match: B9I3P4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09780g PE=4 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.500e-23
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1 

		  

Query: 67  GEVSSLLEESIDKRGPVEINEEESDETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHE 126
           GE  + L+E +     ++ ++++  E  N   KRS+S+  NKWKPEEVK LI + G+LH 
Sbjct: 788 GEQMNKLKEDV-----MDSSDDDLLENENSRLKRSKSVKRNKWKPEEVKSLIKMRGELHS 847

Query: 127 RFQVVRRCMALWEEISSSLVADGFNRTPGQCKSLWASLVQKYECSRELKMLECGYYVVKY 186
           RFQVVR  MALWEEIS++L+ADG NR+PGQCKSLW SLVQKYE S+  K  +  +   + 
Sbjct: 848 RFQVVRGRMALWEEISTNLMADGINRSPGQCKSLWTSLVQKYEESKNGKKGKKAWPYFED 907

Query: 187 MDQIV 192
           MD I+
Sbjct: 908 MDNIL 907
[Close]
BLAST of Spo09664.1 vs. UniProtKB/TrEMBL
Match: A0A078D5H5_BRANA (BnaC03g50930D protein OS=Brassica napus GN=BnaC03g50930D PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.100e-22
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1 

		  

Query: 87  EEESDETLNRSSKRSESMIL-NKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSL 146
           EEE D+T +  +K S   +  NKWKPEEVKK+I + G+LH RFQVV+  MALWEEISS+L
Sbjct: 779 EEEEDDTSDSQTKSSTKRVRRNKWKPEEVKKVIRMRGELHSRFQVVKGRMALWEEISSNL 838

Query: 147 VADGFNRTPGQCKSLWASLVQKYE 170
            A+G NR+PGQCKSLWASL+QKYE
Sbjct: 839 SAEGINRSPGQCKSLWASLIQKYE 862
[Close]
BLAST of Spo09664.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LRV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002120 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.100e-22
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1 

		  

Query: 84  EINEEESDETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISS 143
           E+++++S +T N     S+ +  NKWKPEE+KKLI L G+LH+RFQV R  MALWEEIS+
Sbjct: 793 EVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGELHDRFQVARGRMALWEEISN 852

Query: 144 SLVADGFNRTPGQCKSLWASLVQKYE 170
            + ADG NR+PGQCKSLWASLVQK+E
Sbjct: 853 GMSADGINRSPGQCKSLWASLVQKFE 878
[Close]
BLAST of Spo09664.1 vs. ExPASy Swiss-Prot
Match: TGT3A_ARATH (Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.000e-6
Identity = 22/62 (35.48%), Postives = 37/62 (59.68%), Query Frame = 1 

		  

Query: 108 KWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVADGFNRTPGQCKSLWASLVQK 167
           +W  EE K+L+ +  +L + F   +R   LWE +++ +   GF R+  QCKS W +LV +
Sbjct: 51  QWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTR 110

Query: 168 YE 170
           Y+
Sbjct: 111 YK 112
[Close]
BLAST of Spo09664.1 vs. TAIR (Arabidopsis)
Match: AT5G63420.1 (RNA-metabolising metallo-beta-lactamase family protein)

HSP 1 Score: 108.6 bits (270), Expect = 4.500e-24
Identity = 53/91 (58.24%), Postives = 68/91 (74.73%), Query Frame = 1 

		  

Query: 86  NEEESDETLNRSSKRSES----MILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEI 145
           N  + DE  + S   ++S    +  NKWKPEE+KK+I + G+LH RFQVV+  MALWEEI
Sbjct: 794 NSRDDDELADASDSETKSSPKRVRKNKWKPEEIKKVIRMRGELHSRFQVVKGRMALWEEI 853

Query: 146 SSSLVADGFNRTPGQCKSLWASLVQKYECSR 173
           SS+L A+G NR+PGQCKSLWASL+QKYE S+
Sbjct: 854 SSNLSAEGINRSPGQCKSLWASLIQKYEESK 884
[Close]
BLAST of Spo09664.1 vs. TAIR (Arabidopsis)
Match: AT5G01380.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.700e-7
Identity = 22/62 (35.48%), Postives = 37/62 (59.68%), Query Frame = 1 

		  

Query: 108 KWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVADGFNRTPGQCKSLWASLVQK 167
           +W  EE K+L+ +  +L + F   +R   LWE +++ +   GF R+  QCKS W +LV +
Sbjct: 51  QWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTR 110

Query: 168 YE 170
           Y+
Sbjct: 111 YK 112
[Close]
BLAST of Spo09664.1 vs. TAIR (Arabidopsis)
Match: AT3G25990.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.500e-6
Identity = 22/85 (25.88%), Postives = 44/85 (51.76%), Query Frame = 1 

		  

Query: 89  ESDETLNRSSKRSESMILNKWKPEEVKKLIMLHGDLHERFQVVRRCMALWEEISSSLVAD 148
           E  E +    KR+E+     W  +E + LI L  ++   F   +    LWE+IS  +   
Sbjct: 40  EDHEIIKAPKKRAET-----WAQDETRTLISLRREMDNLFNTSKSNKHLWEQISKKMREK 99

Query: 149 GFNRTPGQCKSLWASLVQKYECSRE 174
           GF+R+P  C   W +++++++ +++
Sbjct: 100 GFDRSPSMCTDKWRNILKEFKKAKQ 119
The following BLAST results are available for this feature:
BLAST of Spo09664.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902177581|gb|KNA08975.1|3.7e-4468.7hypothetical protein SOVF_1578... [more]
gi|731333766|ref|XP_010677898.1|6.5e-3352.1PREDICTED: uncharacterized pro... [more]
gi|731333768|ref|XP_010677899.1|6.5e-3352.1PREDICTED: uncharacterized pro... [more]
gi|566197680|ref|XP_002318122.2|3.6e-2351.2hypothetical protein POPTR_001... [more]
gi|449440566|ref|XP_004138055.1|7.9e-2353.7PREDICTED: uncharacterized pro... [more]
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BLAST of Spo09664.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QP06_SPIOL2.5e-4468.7Uncharacterized protein OS=Spi... [more]
A0A0J8CGG6_BETVU4.5e-3352.1Uncharacterized protein OS=Bet... [more]
B9I3P4_POPTR2.5e-2351.2Uncharacterized protein OS=Pop... [more]
A0A078D5H5_BRANA2.1e-2265.4BnaC03g50930D protein OS=Brass... [more]
A0A0A0LRV7_CUCSA6.1e-2261.6Uncharacterized protein OS=Cuc... [more]
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BLAST of Spo09664.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TGT3A_ARATH3.0e-635.4Trihelix transcription factor ... [more]
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BLAST of Spo09664.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G63420.14.5e-2458.2RNA-metabolising metallo-beta-... [more]
AT5G01380.11.7e-735.4Homeodomain-like superfamily p... [more]
AT3G25990.15.5e-625.8Homeodomain-like superfamily p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 107..167
score: 3.
IPR017877Myb-like domainPROFILEPS50090MYB_LIKEcoord: 101..165
score: 7
NoneNo IPR availablePFAMPF13837Myb_DNA-bind_4coord: 107..173
score: 4.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006857 oligopeptide transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0000785 chromatin
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005777 peroxisome
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0035673 oligopeptide transmembrane transporter activity
molecular_function GO:0047617 acyl-CoA hydrolase activity
RNA-Seq Expression