Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCAAAAAAAATAATAAAAAAAGTAGGTGAAAACAAAAGATGTGAAATTTCTTTTCATTTCATTTCATTGCTTTAATCTTTGCCTTACTTTCTTTCTCATAAACAGACACAACACACACAAGTCTTTGATTCTTTCTCTCCTCCTTTCCTCCATCAAAATCATCACATATCAAAATTCTACGATAAATGTCGTGTACCGCCCTATTCACCTCCTAAAATTACAGTCCACTCACTAAAAAGTAAAAACTCAAAAGTCACAGTGAGTGTCGTATACCGCTATTTTCTCCCTTTTCAGGTTAATTATTTACCTCCCAAAATTACCATTCACTCAGATTAGATTAAAAAGTCTATAGCGAGTGTCGTGTACCGCTATACTCCCTTCTATTCACCTCCCAAAATTACTGTCGTGTACCGCTATTTATCGACCCTTTTGTCCCTTTCCCGGGAAAATTATTTACCTCCCAAAATTACAGTGATCGATCCGCATAATAATAATAAAAACATTGGGTTAGATTATTATTAGATTAAAAAAAGGCATTGAAGAGTCCGCCTTAGTTTTCCTGAATTATCTTGACAATTAAATCTCTCTTTCTTTCTATATCGTTCTGCCTCCTTCCCTACCCCTACCACCCTCCTTATTACAATCTCTCATGCATCTTCTGTGTTTGCCTTAATTTTCCCACATCTTTCTCTCTCCTCTCTTTATTTGTGTGTGTTTTCTTCCCCCCCACATTGCTCCATACTCTTCTCTCTCTCTCTTTTTATATCTTCGTAACCCACACAAATCAAATTTATCCTCTTCTTCTTTTAAAGGGGTGTTATGGCAGTTCAAGCTCAATACCCTTCTAATGTTCTCCTCTTAAACAGGTTTTTCTTTTTTCTTCTTCTCCCTCTGTTTTTTTAAAAAAAAATTCAGAAGATTGCGATTGTTATGAATGAATGATTTATTGATTGGTTTTGGGTATTATGAATGCAGAAACGTTCAGGAAAACAACGATTATTCTTTGCATCATCATACTGGTGGTGGAGGAGGTGGTGGAGGAGGTGGCGACAGCGGCGGATTCATTGACCAATCCCGAATGCTTTTTAACAATAATGGAGGTTAGTTTTTGTTTTCTCGTTAATTATTCAAAACGCTTTAGTTCTTAGTATTTTCTTAATGGGGGTGAATTAATGGAATTGATTGATTTTTATAACAGTGGGAGTTAATCCGAGAAAAAGAAGCAGAGAGGTTGCGGCGGCGACAACAGCAACAACGACGACAACAACGATTAATTCATTCAACTTCTCTCTCCAAAATCAACAACAAAATCAGAATCATAATCAAAATCATCAGTTGATCGATCTTTCGCAGCTTCAAAATCACCAGCAACAAAATCATCAACAACAGACTAATGTGGTATCGACTGGCCTTAGATTATCATTTGGAGACCAAAATCATCAGCTTCAGCAACTCCATCATCAACAACAACAACAACAGCAGCAACAGCAACAACAACAACAACCCAATAATAATAATACGTTTCTCTCTCTTCTTTCTGAAGAATTCGCCCTTCAATTTAAACAACAGAGTGATGAACTCTCTTACTTTCTCCATTCCCAGGTAATTTTCCTTTTTTTATTATTATAAAATATTTTGTATAATTCTCCATTTTGGAATGGAAATGGTCAACTTCTGCCATAAATGCCAACGGGTTGAAGTTTTTTTTTAACGTAAATTCAGGGAGAACAGTTGAAGCGCACGTTAGCAGAAAAGAGGCAGAGGCACTATCGTGCGCTGCTAGGCGCAGCGGAGGAAGCTGTGGCGCGACGGATGAGAGAGAAAGAAGCGGAGGTGGATAAAGCAGCAAGGCGAAACGCTGAGTTAGAAGCCCGAGCGGCCCAATTAAGCGCGGAGGCCCAATCATGGCAGGCTAAAGCTCGGGCCCAAGAAGTCCAAGCTGTGTCCCTTCAGGCCCAACTACAGCAAGCGATGGTGGGCCCTGGGAATGTTAACGGCGCACTACAGCAGGATAGAGAGGGGAGTGTGGTAGGGTGCGCCGGTGATGCGGAGGATGCCGAGTCGGCGTATGTTGACCCAGTGAGTGACCGGCGAGTTTCGTCGCCGAGTTGTAAGATGTGTCGGACACGTGTCGCGTCGGTGGTGCTGTTGCCGTGTCGGCACTTGTGCGTGTGTAGGGAATGTGACGACGTCGTTCAAGCTTGCCCACTTTGTTTGTCTCTTCGAAGTGCCAGTGTTGAGGTCTACCTCAGTTAGTTTGGCCCACCTGGCCCATTACAGGAATTCAGGCCCATTAAATGCGACCCAAAAAAGAAAAAAGGACCAAAAAAATTGAAAAAAAATAATGAGAAAATGGTAGTAATAGAAAAATTATATTAAAAAAAACAAAAAAACTTCCGCAACTTTGAAAACCGAGCCCCTCAAAACGACAACAAAATGAACTTTTGCTACTTTAATTTTGGGTCGTTTACAATGGGTGGTGAATGTACATGGCCAATGAGGCATTTTTTTTCTTCTTTCTTGAAATTTAATTTCATACATAAAATTCTTTTATTCTATAATTAATTTTTGTTCACGGATTTTTTACCATTTACGTAGGCTTTTTGGAATTATATATTAAATGGTAAGTTATTGGATTGGTGAAATGTGTGCACATGAAAAATGAATGCGTATTCTACTCGTTAAATAAACTATGCATTGGTTTACCAAGTTTCAGTTAGAGAACGCGATTTTCAGTAATTTAATGCCACGGATCGGAATAAAGAAAAAAAAACTTTTATATAAAGCGGTGTTACATAAAATACCACCTTGGTGTCATATATGAGCAATGGAATCAATTAGTTATGCACTAGAACTAATTAATTAAGTAACGAAACCAATTAGTTAAGCAATGGAACTAATTAGTTAAGCAAAGAGGTATTTTCGGTAAGGCAATTTTACACAAAAGTTGCCAAAAATACAATCAGGATTCTTGGGAAAATAATGATTCCAAAAAAAAAAAAGAGCTTGGTGCATTCTCCATATACAATATCATTTCAAACCAATCTAAACCTAGGAACCTAGCTTGTTGACATAGGACTCATCTAGTTTTAACTTTTAAGATCAGAACAAAGAAATTTGTACTAGTATTATTAAAGTGGGC TCCAAAAAAAATAATAAAAAAAGTAGGTGAAAACAAAAGATGTGAAATTTCTTTTCATTTCATTTCATTGCTTTAATCTTTGCCTTACTTTCTTTCTCATAAACAGACACAACACACACAAGTCTTTGATTCTTTCTCTCCTCCTTTCCTCCATCAAAATCATCACATATCAAAATTCTACGATAAATGTCGTGTACCGCCCTATTCACCTCCTAAAATTACAGTCCACTCACTAAAAAGTAAAAACTCAAAAGTCACAGTGAGTGTCGTATACCGCTATTTTCTCCCTTTTCAGGTTAATTATTTACCTCCCAAAATTACCATTCACTCAGATTAGATTAAAAAGTCTATAGCGAGTGTCGTGTACCGCTATACTCCCTTCTATTCACCTCCCAAAATTACTGTCGTGTACCGCTATTTATCGACCCTTTTGTCCCTTTCCCGGGAAAATTATTTACCTCCCAAAATTACAGTGATCGATCCGCATAATAATAATAAAAACATTGGGTTAGATTATTATTAGATTAAAAAAAGGCATTGAAGAGTCCGCCTTAGTTTTCCTGAATTATCTTGACAATTAAATCTCTCTTTCTTTCTATATCGTTCTGCCTCCTTCCCTACCCCTACCACCCTCCTTATTACAATCTCTCATGCATCTTCTGTGTTTGCCTTAATTTTCCCACATCTTTCTCTCTCCTCTCTTTATTTGTGTGTGTTTTCTTCCCCCCCACATTGCTCCATACTCTTCTCTCTCTCTCTTTTTATATCTTCGTAACCCACACAAATCAAATTTATCCTCTTCTTCTTTTAAAGGGGTGTTATGGCAGTTCAAGCTCAATACCCTTCTAATGTTCTCCTCTTAAACAGAAACGTTCAGGAAAACAACGATTATTCTTTGCATCATCATACTGGTGGTGGAGGAGGTGGTGGAGGAGGTGGCGACAGCGGCGGATTCATTGACCAATCCCGAATGCTTTTTAACAATAATGGAGTGGGAGTTAATCCGAGAAAAAGAAGCAGAGAGGTTGCGGCGGCGACAACAGCAACAACGACGACAACAACGATTAATTCATTCAACTTCTCTCTCCAAAATCAACAACAAAATCAGAATCATAATCAAAATCATCAGTTGATCGATCTTTCGCAGCTTCAAAATCACCAGCAACAAAATCATCAACAACAGACTAATGTGGTATCGACTGGCCTTAGATTATCATTTGGAGACCAAAATCATCAGCTTCAGCAACTCCATCATCAACAACAACAACAACAGCAGCAACAGCAACAACAACAACAACCCAATAATAATAATACGTTTCTCTCTCTTCTTTCTGAAGAATTCGCCCTTCAATTTAAACAACAGAGTGATGAACTCTCTTACTTTCTCCATTCCCAGGGAGAACAGTTGAAGCGCACGTTAGCAGAAAAGAGGCAGAGGCACTATCGTGCGCTGCTAGGCGCAGCGGAGGAAGCTGTGGCGCGACGGATGAGAGAGAAAGAAGCGGAGGTGGATAAAGCAGCAAGGCGAAACGCTGAGTTAGAAGCCCGAGCGGCCCAATTAAGCGCGGAGGCCCAATCATGGCAGGCTAAAGCTCGGGCCCAAGAAGTCCAAGCTGTGTCCCTTCAGGCCCAACTACAGCAAGCGATGGTGGGCCCTGGGAATGTTAACGGCGCACTACAGCAGGATAGAGAGGGGAGTGTGGTAGGGTGCGCCGGTGATGCGGAGGATGCCGAGTCGGCGTATGTTGACCCAGTGAGTGACCGGCGAGTTTCGTCGCCGAGTTGTAAGATGTGTCGGACACGTGTCGCGTCGGTGGTGCTGTTGCCGTGTCGGCACTTGTGCGTGTGTAGGGAATGTGACGACGTCGTTCAAGCTTGCCCACTTTGTTTGTCTCTTCGAAGTGCCAGTGTTGAGGTCTACCTCAGTTAGTTTGGCCCACCTGGCCCATTACAGGAATTCAGGCCCATTAAATGCGACCCAAAAAAGAAAAAAGGACCAAAAAAATTGAAAAAAAATAATGAGAAAATGGTAGTAATAGAAAAATTATATTAAAAAAAACAAAAAAACTTCCGCAACTTTGAAAACCGAGCCCCTCAAAACGACAACAAAATGAACTTTTGCTACTTTAATTTTGGGTCGTTTACAATGGGTGGTGAATGTACATGGCCAATGAGGCATTTTTTTTCTTCTTTCTTGAAATTTAATTTCATACATAAAATTCTTTTATTCTATAATTAATTTTTGTTCACGGATTTTTTACCATTTACGTAGGCTTTTTGGAATTATATATTAAATGGTAAGTTATTGGATTGGTGAAATGTGTGCACATGAAAAATGAATGCGTATTCTACTCGTTAAATAAACTATGCATTGGTTTACCAAGTTTCAGTTAGAGAACGCGATTTTCAGTAATTTAATGCCACGGATCGGAATAAAGAAAAAAAAACTTTTATATAAAGCGGTGTTACATAAAATACCACCTTGGTGTCATATATGAGCAATGGAATCAATTAGTTATGCACTAGAACTAATTAATTAAGTAACGAAACCAATTAGTTAAGCAATGGAACTAATTAGTTAAGCAAAGAGGTATTTTCGGTAAGGCAATTTTACACAAAAGTTGCCAAAAATACAATCAGGATTCTTGGGAAAATAATGATTCCAAAAAAAAAAAAGAGCTTGGTGCATTCTCCATATACAATATCATTTCAAACCAATCTAAACCTAGGAACCTAGCTTGTTGACATAGGACTCATCTAGTTTTAACTTTTAAGATCAGAACAAAGAAATTTGTACTAGTATTATTAAAGTGGGC ATGGCAGTTCAAGCTCAATACCCTTCTAATGTTCTCCTCTTAAACAGAAACGTTCAGGAAAACAACGATTATTCTTTGCATCATCATACTGGTGGTGGAGGAGGTGGTGGAGGAGGTGGCGACAGCGGCGGATTCATTGACCAATCCCGAATGCTTTTTAACAATAATGGAGTGGGAGTTAATCCGAGAAAAAGAAGCAGAGAGGTTGCGGCGGCGACAACAGCAACAACGACGACAACAACGATTAATTCATTCAACTTCTCTCTCCAAAATCAACAACAAAATCAGAATCATAATCAAAATCATCAGTTGATCGATCTTTCGCAGCTTCAAAATCACCAGCAACAAAATCATCAACAACAGACTAATGTGGTATCGACTGGCCTTAGATTATCATTTGGAGACCAAAATCATCAGCTTCAGCAACTCCATCATCAACAACAACAACAACAGCAGCAACAGCAACAACAACAACAACCCAATAATAATAATACGTTTCTCTCTCTTCTTTCTGAAGAATTCGCCCTTCAATTTAAACAACAGAGTGATGAACTCTCTTACTTTCTCCATTCCCAGGGAGAACAGTTGAAGCGCACGTTAGCAGAAAAGAGGCAGAGGCACTATCGTGCGCTGCTAGGCGCAGCGGAGGAAGCTGTGGCGCGACGGATGAGAGAGAAAGAAGCGGAGGTGGATAAAGCAGCAAGGCGAAACGCTGAGTTAGAAGCCCGAGCGGCCCAATTAAGCGCGGAGGCCCAATCATGGCAGGCTAAAGCTCGGGCCCAAGAAGTCCAAGCTGTGTCCCTTCAGGCCCAACTACAGCAAGCGATGGTGGGCCCTGGGAATGTTAACGGCGCACTACAGCAGGATAGAGAGGGGAGTGTGGTAGGGTGCGCCGGTGATGCGGAGGATGCCGAGTCGGCGTATGTTGACCCAGTGAGTGACCGGCGAGTTTCGTCGCCGAGTTGTAAGATGTGTCGGACACGTGTCGCGTCGGTGGTGCTGTTGCCGTGTCGGCACTTGTGCGTGTGTAGGGAATGTGACGACGTCGTTCAAGCTTGCCCACTTTGTTTGTCTCTTCGAAGTGCCAGTGTTGAGGTCTACCTCAGTTAG MAVQAQYPSNVLLLNRNVQENNDYSLHHHTGGGGGGGGGGDSGGFIDQSRMLFNNNGVGVNPRKRSREVAAATTATTTTTTINSFNFSLQNQQQNQNHNQNHQLIDLSQLQNHQQQNHQQQTNVVSTGLRLSFGDQNHQLQQLHHQQQQQQQQQQQQQQPNNNNTFLSLLSEEFALQFKQQSDELSYFLHSQGEQLKRTLAEKRQRHYRALLGAAEEAVARRMREKEAEVDKAARRNAELEARAAQLSAEAQSWQAKARAQEVQAVSLQAQLQQAMVGPGNVNGALQQDREGSVVGCAGDAEDAESAYVDPVSDRRVSSPSCKMCRTRVASVVLLPCRHLCVCRECDDVVQACPLCLSLRSASVEVYLS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09716.1 vs. NCBI nr
Match: gi|902230315|gb|KNA21803.1| (hypothetical protein SOVF_039760 [Spinacia oleracea]) HSP 1 Score: 668.7 bits (1724), Expect = 5.900e-189 Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 1
BLAST of Spo09716.1 vs. NCBI nr
Match: gi|731332433|ref|XP_010677203.1| (PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 507.7 bits (1306), Expect = 1.700e-140 Identity = 302/370 (81.62%), Postives = 319/370 (86.22%), Query Frame = 1
BLAST of Spo09716.1 vs. NCBI nr
Match: gi|703152835|ref|XP_010110525.1| (hypothetical protein L484_023358 [Morus notabilis]) HSP 1 Score: 347.1 bits (889), Expect = 3.900e-92 Identity = 234/388 (60.31%), Postives = 269/388 (69.33%), Query Frame = 1
BLAST of Spo09716.1 vs. NCBI nr
Match: gi|567895276|ref|XP_006440126.1| (hypothetical protein CICLE_v10020548mg [Citrus clementina]) HSP 1 Score: 342.8 bits (878), Expect = 7.400e-91 Identity = 235/381 (61.68%), Postives = 265/381 (69.55%), Query Frame = 1
BLAST of Spo09716.1 vs. NCBI nr
Match: gi|641833680|gb|KDO52690.1| (hypothetical protein CISIN_1g016506mg [Citrus sinensis]) HSP 1 Score: 342.4 bits (877), Expect = 9.600e-91 Identity = 235/382 (61.52%), Postives = 265/382 (69.37%), Query Frame = 1
BLAST of Spo09716.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQP6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_039760 PE=4 SV=1) HSP 1 Score: 668.7 bits (1724), Expect = 4.100e-189 Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 1
BLAST of Spo09716.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDT9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g105630 PE=4 SV=1) HSP 1 Score: 507.7 bits (1306), Expect = 1.200e-140 Identity = 302/370 (81.62%), Postives = 319/370 (86.22%), Query Frame = 1
BLAST of Spo09716.1 vs. UniProtKB/TrEMBL
Match: W9S5I0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023358 PE=4 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 2.700e-92 Identity = 234/388 (60.31%), Postives = 269/388 (69.33%), Query Frame = 1
BLAST of Spo09716.1 vs. UniProtKB/TrEMBL
Match: V4TTY7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020548mg PE=4 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 5.100e-91 Identity = 235/381 (61.68%), Postives = 265/381 (69.55%), Query Frame = 1
BLAST of Spo09716.1 vs. UniProtKB/TrEMBL
Match: A0A067EFQ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016506mg PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 6.700e-91 Identity = 235/382 (61.52%), Postives = 265/382 (69.37%), Query Frame = 1
BLAST of Spo09716.1 vs. ExPASy Swiss-Prot
Match: BRG2_ARATH (Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana GN=BRG2 PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.200e-13 Identity = 73/226 (32.30%), Postives = 106/226 (46.90%), Query Frame = 1
BLAST of Spo09716.1 vs. ExPASy Swiss-Prot
Match: BOI_ARATH (E3 ubiquitin-protein ligase BOI OS=Arabidopsis thaliana GN=BOI PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 8.100e-13 Identity = 63/208 (30.29%), Postives = 101/208 (48.56%), Query Frame = 1
BLAST of Spo09716.1 vs. ExPASy Swiss-Prot
Match: BRG3_ARATH (Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.500e-11 Identity = 60/219 (27.40%), Postives = 103/219 (47.03%), Query Frame = 1
BLAST of Spo09716.1 vs. ExPASy Swiss-Prot
Match: BRG1_ARATH (BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana GN=BRG1 PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 3.000e-7 Identity = 72/277 (25.99%), Postives = 125/277 (45.13%), Query Frame = 1
BLAST of Spo09716.1 vs. TAIR (Arabidopsis)
Match: AT1G32740.1 (SBP (S-ribonuclease binding protein) family protein) HSP 1 Score: 193.0 bits (489), Expect = 3.300e-49 Identity = 156/372 (41.94%), Postives = 207/372 (55.65%), Query Frame = 1
BLAST of Spo09716.1 vs. TAIR (Arabidopsis)
Match: AT5G47050.1 (SBP (S-ribonuclease binding protein) family protein) HSP 1 Score: 180.3 bits (456), Expect = 2.200e-45 Identity = 153/374 (40.91%), Postives = 202/374 (54.01%), Query Frame = 1
BLAST of Spo09716.1 vs. TAIR (Arabidopsis)
Match: AT4G17680.1 (SBP (S-ribonuclease binding protein) family protein) HSP 1 Score: 171.4 bits (433), Expect = 1.000e-42 Identity = 141/367 (38.42%), Postives = 194/367 (52.86%), Query Frame = 1
BLAST of Spo09716.1 vs. TAIR (Arabidopsis)
Match: AT1G10650.1 (SBP (S-ribonuclease binding protein) family protein) HSP 1 Score: 102.1 bits (253), Expect = 7.700e-22 Identity = 103/343 (30.03%), Postives = 164/343 (47.81%), Query Frame = 1
BLAST of Spo09716.1 vs. TAIR (Arabidopsis)
Match: AT1G45976.1 (S-ribonuclease binding protein 1) HSP 1 Score: 99.4 bits (246), Expect = 5.000e-21 Identity = 65/212 (30.66%), Postives = 117/212 (55.19%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09716.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09716.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09716.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo09716.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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