Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCATCACCCGCTTTTCATCCATTTAATTCGAATTTTCACCCGTTTAATTATAGCGGGTGATCGGGTCAATGGATCATCCACTGGATATTTCCATCCCTACATCAAGCCACAAGCTACAAAAATTGAGCAAAAAACAAACAACTTAAACAAAAGATTGAAGGTGAGCCCCCCTAAAACCCAAAACTGTGTGTCTTTCTCTCTCTTACCCATCAGTTCATCACCACCATGCTCAGCCATGAATGAACCCATACTACTTTGAGAGCATCTTCACACTACAACACTCCAACTCTCATCATCTTCTTCTTCCCCCTCAAAATCATCACAAATAATGAAAATGGCTTTACTCTCTTTATCCTCATCTTCAACCCCTACTCTCTCTCCTCTTCCTTCTTCCAAACCCCACCACAACCTTACCCACAAGCCTTATCTTCTCCCTCTTCCCAGAAATACCCACCTCTCAATTTCCCCACTTAGAGTTTCAGCTTCTGACAATGGAGCTGGGGTTACTGCTGTTGTTACTGAGGAGAAGGTTCTAGAAACCCCATCTCAGGAAAAAGGAACTGGGTCTGATTCTGCAGATTCAGCTTCAACCCCTAAATCGGTGAAAAATGAGGAGGATGTTACACCCGTTAAAGCTGCTAATGAAGAGGTTGTGAAGAAATTTTCGGACCCCAGATGGGTTAAAGGGACTTGGGATTTGAAGCAGTTTCTGGGTAAAGATGGAATTACTACTGATTGGGATGCTGTTATTGATGCTGGTAATTTTTCTTTATTTTTGTTAATCCCTAATTTCAGTTTTTGTTAGTTTGCTCTAGTTTTGAGCTGTTTTTTTGGGTAATTTTATCCTTGACTTTGTATCTGGCATTGAATTCTGTTTGCTGATTTTGAAGGCATTATTAGTACAGTAGCTTAATGTATTTGTTAATCTCTTGATTGGAATTTTAAGGGGGGTTTTAGGTGGAATTTGATACTGTTTGTAGACTTGTAGTATGCACATTTGAATGAAATGTAATCTTTCATCAATGGAGTTGAGAAATGGAACCAAATTACTGCATCTTGTGATATGCTATTGTGCTCGGTTTGCATGTGTAGATGGATGTCTTTATTGTTATGTCTTATTACTGCAATAGCAATACAATGGTTGCTTATCAGCTGGTGAACTTGCTTTTAGGGATGAGAAGATTTGGTTACTTGATATTTAGATATAGGTGATGTTTGAATTGATGATGGAAATTTAGCTACAAGTGTTAATCTGAGAATGAACTCATGAAGATAAATGTATCTGTTACCTTTGCTATTCATGCATTGTTTTCGTGATCATTCGTTGTTACAGAAGAGAAATGCTTAGGAGATAACGAGTTTATCGAAAGTGTTGTCTTCTTCTATTTGGCTTTCCAAATCCGCGCTTGGTGATAGAAGGTTTTGTGTGTTGTGATTACATCCTTGGTAACAAATGCTTGGTTGAAGATGGCCTTTTTGCTGATTGTGAGCTAGTATTTGATTTTTGCAGTGTGCATTTTGTGATTTCTATTGTGGATTCAATGGTGTTCTGTCATCTTTCTGTAAGATGTTTCTTTTGTGCTATACTGGCAAGTGTTGATATCCTCTCAAATAGAAAGATTGTGCCGTGTGATTTGTGAAACTCGGTTTTCCTGTCGCATCAAATAAAAAATCAATTATCTTCTCAATCTTGACATTATTTGCAAATCAACTGTGTTGTTGGTTAATGTTTTGCAGAGGCGAGGAGGAGGAAGCGGCTCCAAACCACCCCGGAATCATCAACTAATGATGAACTTGTTGTTTTTGATACCTCGATAATTCCATGGTGGGCATGGGTTAAAAGATTCCACCTTCCTGAAGCTGAGCTTCTTAATGGTTTGTCTCCACTCTTAATCCACACAAATCATGCCTGATATATACTTTCTCTGTTCTGTTCTTATGTACATGACACAATTTCATTTTAGGGAATTTCCTTTTTACTTGACACAATTCTATCATGAGAAAGTTCTGTATTGTGAATTGTCATATTTACCCTCACTCTTCTGGTGATGGTTGGTTGTTGTTAAGGGGCACTTTTGTCCTTTAACTTTCTCTTTTACCTCTCCTTGATATGTGTGCCAAAATCAATAATGTAGGAAGTATTGTTCAATTACATTTGATTTATTTCTTTCCCTTTTTGGTGACATTTTTTCGTTTGGGTTTGCAGGGCGTGCTGCTATGATCGGTTTCTTCATGGCTTATTTCGTCGATAGCTTGACCGGTGTAGGACTTGTGGATCAAATGGGTAACTTCTTCTGTAAAACATTGTTATTTGTTGCTGTTGTTGGTGTGTTGTTCATTCGTAAGAACGAAGATCTAGATAACTTAAAGAAGCTTCTAGAAGAGACGACCTTGTATGACAAGCAATGGCAAGCAACATGGCAAGATGAGAGCACCAAGAAAGATTAGTTTATCAGGATTTTGAATCTGAATATGGTTTTGTTTGTATGTTAAGGGTAGGCTTCATCAAATATTGTAGCCACAAAAGACTTGGCACTTTATTACTGAGTAATATCGTTTCGTGCTATCGTTTCGTGTTGTATTTAGGAGCATTCACTTAATTGTAAGTTTGTAACTGCAAGAGGAAATGACAGTATGGTTTACCAATTGCCAGTACAATATTTCAATCTGGTTTTGAACATTGAACCACCCAAACAAAATAGAAAAAGATAATGTAAACATATTGGATCAAACCAACATCGGATCGGATTTTTTCGAGTGATCGGATTTTTTTATCCGGTTAGATCAAGTTTTTTTCAATTTCGATTAGTTATTTTCGG CCCATCACCCGCTTTTCATCCATTTAATTCGAATTTTCACCCGTTTAATTATAGCGGGTGATCGGGTCAATGGATCATCCACTGGATATTTCCATCCCTACATCAAGCCACAAGCTACAAAAATTGAGCAAAAAACAAACAACTTAAACAAAAGATTGAAGGTGAGCCCCCCTAAAACCCAAAACTGTGTGTCTTTCTCTCTCTTACCCATCAGTTCATCACCACCATGCTCAGCCATGAATGAACCCATACTACTTTGAGAGCATCTTCACACTACAACACTCCAACTCTCATCATCTTCTTCTTCCCCCTCAAAATCATCACAAATAATGAAAATGGCTTTACTCTCTTTATCCTCATCTTCAACCCCTACTCTCTCTCCTCTTCCTTCTTCCAAACCCCACCACAACCTTACCCACAAGCCTTATCTTCTCCCTCTTCCCAGAAATACCCACCTCTCAATTTCCCCACTTAGAGTTTCAGCTTCTGACAATGGAGCTGGGGTTACTGCTGTTGTTACTGAGGAGAAGGTTCTAGAAACCCCATCTCAGGAAAAAGGAACTGGGTCTGATTCTGCAGATTCAGCTTCAACCCCTAAATCGGTGAAAAATGAGGAGGATGTTACACCCGTTAAAGCTGCTAATGAAGAGGTTGTGAAGAAATTTTCGGACCCCAGATGGGTTAAAGGGACTTGGGATTTGAAGCAGTTTCTGGGTAAAGATGGAATTACTACTGATTGGGATGCTGTTATTGATGCTGAGGCGAGGAGGAGGAAGCGGCTCCAAACCACCCCGGAATCATCAACTAATGATGAACTTGTTGTTTTTGATACCTCGATAATTCCATGGTGGGCATGGGTTAAAAGATTCCACCTTCCTGAAGCTGAGCTTCTTAATGGGCGTGCTGCTATGATCGGTTTCTTCATGGCTTATTTCGTCGATAGCTTGACCGGTGTAGGACTTGTGGATCAAATGGGTAACTTCTTCTGTAAAACATTGTTATTTGTTGCTGTTGTTGGTGTGTTGTTCATTCGTAAGAACGAAGATCTAGATAACTTAAAGAAGCTTCTAGAAGAGACGACCTTGTATGACAAGCAATGGCAAGCAACATGGCAAGATGAGAGCACCAAGAAAGATTAGTTTATCAGGATTTTGAATCTGAATATGGTTTTGTTTGTATGTTAAGGGTAGGCTTCATCAAATATTGTAGCCACAAAAGACTTGGCACTTTATTACTGAGTAATATCGTTTCGTGCTATCGTTTCGTGTTGTATTTAGGAGCATTCACTTAATTGTAAGTTTGTAACTGCAAGAGGAAATGACAGTATGGTTTACCAATTGCCAGTACAATATTTCAATCTGGTTTTGAACATTGAACCACCCAAACAAAATAGAAAAAGATAATGTAAACATATTGGATCAAACCAACATCGGATCGGATTTTTTCGAGTGATCGGATTTTTTTATCCGGTTAGATCAAGTTTTTTTCAATTTCGATTAGTTATTTTCGG ATGAAAATGGCTTTACTCTCTTTATCCTCATCTTCAACCCCTACTCTCTCTCCTCTTCCTTCTTCCAAACCCCACCACAACCTTACCCACAAGCCTTATCTTCTCCCTCTTCCCAGAAATACCCACCTCTCAATTTCCCCACTTAGAGTTTCAGCTTCTGACAATGGAGCTGGGGTTACTGCTGTTGTTACTGAGGAGAAGGTTCTAGAAACCCCATCTCAGGAAAAAGGAACTGGGTCTGATTCTGCAGATTCAGCTTCAACCCCTAAATCGGTGAAAAATGAGGAGGATGTTACACCCGTTAAAGCTGCTAATGAAGAGGTTGTGAAGAAATTTTCGGACCCCAGATGGGTTAAAGGGACTTGGGATTTGAAGCAGTTTCTGGGTAAAGATGGAATTACTACTGATTGGGATGCTGTTATTGATGCTGAGGCGAGGAGGAGGAAGCGGCTCCAAACCACCCCGGAATCATCAACTAATGATGAACTTGTTGTTTTTGATACCTCGATAATTCCATGGTGGGCATGGGTTAAAAGATTCCACCTTCCTGAAGCTGAGCTTCTTAATGGGCGTGCTGCTATGATCGGTTTCTTCATGGCTTATTTCGTCGATAGCTTGACCGGTGTAGGACTTGTGGATCAAATGGGTAACTTCTTCTGTAAAACATTGTTATTTGTTGCTGTTGTTGGTGTGTTGTTCATTCGTAAGAACGAAGATCTAGATAACTTAAAGAAGCTTCTAGAAGAGACGACCTTGTATGACAAGCAATGGCAAGCAACATGGCAAGATGAGAGCACCAAGAAAGATTAG MKMALLSLSSSSTPTLSPLPSSKPHHNLTHKPYLLPLPRNTHLSISPLRVSASDNGAGVTAVVTEEKVLETPSQEKGTGSDSADSASTPKSVKNEEDVTPVKAANEEVVKKFSDPRWVKGTWDLKQFLGKDGITTDWDAVIDAEARRRKRLQTTPESSTNDELVVFDTSIIPWWAWVKRFHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVVGVLFIRKNEDLDNLKKLLEETTLYDKQWQATWQDESTKKD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09777.1 vs. NCBI nr
Match: gi|902159427|gb|KNA06331.1| (hypothetical protein SOVF_182080 [Spinacia oleracea]) HSP 1 Score: 530.0 bits (1364), Expect = 2.400e-147 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
BLAST of Spo09777.1 vs. NCBI nr
Match: gi|731332320|ref|XP_010677139.1| (PREDICTED: uncharacterized protein LOC104892829 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 393.3 bits (1009), Expect = 3.500e-106 Identity = 226/283 (79.86%), Postives = 238/283 (84.10%), Query Frame = 1
BLAST of Spo09777.1 vs. NCBI nr
Match: gi|1009157292|ref|XP_015896688.1| (PREDICTED: uncharacterized protein LOC107430367 [Ziziphus jujuba]) HSP 1 Score: 302.4 bits (773), Expect = 8.100e-79 Identity = 177/273 (64.84%), Postives = 195/273 (71.43%), Query Frame = 1
BLAST of Spo09777.1 vs. NCBI nr
Match: gi|976900420|gb|KVH88622.1| (Chlorophyll A-B binding protein [Cynara cardunculus var. scolymus]) HSP 1 Score: 293.1 bits (749), Expect = 4.900e-76 Identity = 163/263 (61.98%), Postives = 184/263 (69.96%), Query Frame = 1
BLAST of Spo09777.1 vs. NCBI nr
Match: gi|641838095|gb|KDO57042.1| (hypothetical protein CISIN_1g025671mg [Citrus sinensis]) HSP 1 Score: 291.2 bits (744), Expect = 1.900e-75 Identity = 162/256 (63.28%), Postives = 185/256 (72.27%), Query Frame = 1
BLAST of Spo09777.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIC4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_182080 PE=4 SV=1) HSP 1 Score: 530.0 bits (1364), Expect = 1.700e-147 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
BLAST of Spo09777.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CI94_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g105240 PE=4 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 2.400e-106 Identity = 226/283 (79.86%), Postives = 238/283 (84.10%), Query Frame = 1
BLAST of Spo09777.1 vs. UniProtKB/TrEMBL
Match: A0A103XD97_CYNCS (Chlorophyll A-B binding protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026294 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 3.400e-76 Identity = 163/263 (61.98%), Postives = 184/263 (69.96%), Query Frame = 1
BLAST of Spo09777.1 vs. UniProtKB/TrEMBL
Match: A0A067F0L4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025671mg PE=4 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 1.300e-75 Identity = 162/256 (63.28%), Postives = 185/256 (72.27%), Query Frame = 1
BLAST of Spo09777.1 vs. UniProtKB/TrEMBL
Match: A0A0S3R558_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G371400 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.700e-75 Identity = 165/266 (62.03%), Postives = 194/266 (72.93%), Query Frame = 1
BLAST of Spo09777.1 vs. TAIR (Arabidopsis)
Match: AT4G17600.1 (Chlorophyll A-B binding family protein) HSP 1 Score: 257.7 bits (657), Expect = 8.000e-69 Identity = 154/275 (56.00%), Postives = 178/275 (64.73%), Query Frame = 1
BLAST of Spo09777.1 vs. TAIR (Arabidopsis)
Match: AT5G47110.1 (Chlorophyll A-B binding family protein) HSP 1 Score: 254.6 bits (649), Expect = 6.800e-68 Identity = 146/246 (59.35%), Postives = 171/246 (69.51%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09777.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09777.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09777.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo09777.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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