Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TACATAGGATAAGGCAGTCCTATTTGATAATAGACAATCCTATTCCTATCTACTTTGGTAGTGTATTTGATATGTAGCCAAAAACATGGGTCCAACTCACGACAATAACCTCAGGACTCCGACCTTAGCGCAGCCCCTCCCTTCCCCTTGAATTAGTCAATCAATTCCAATAATTTCCCGTCCTCACTCATTCACTCTCTCCAATCTCCATCTCTCTCCCTCTCTCTCCCCAAAATCTGGTACACAATTGAATTGAATAGAATTGTAGAATTAGTACAGAGATGGGTGATAAAAGAGCAATTCCGACGCCGGTGAAGCGGGTAGGAAGATGGATTCGAAGCCGATCGGTGCGAGAGCAAGTCACCATGAGCGTCGTTGCAGCGCTAATATTGCTCGTTATATTGAAATTTTCCGTCAAAGGCCAAAACAACATGTTTATTTTTACTCAAATTGCTCATTCTGCTGGAATCTTGGTCTTAACTTACAAGCTCTCCGTCACCAAAACTTGTTCTGGTATATTTCTTTTCAATTTTTAAATGTTAATTGAATTGAATTACTCTTTAATTTTGTTAATGACATAGAAATTTTACATCTTTATTGTTGATTATTTGTTTTGGAGCACATTTTCATCATAAAGATACTAATTTGGAAGAAAATATATACAGATCATTTGGAAGAAAATATCTTGTCTTGAATTTCACTAATTTGTTTTCATTTTCTGTTCAAATTTTCACAACATAGGAGAAGTGAATTAACTGTTTTGGTTTTTTCTTGGGGAGTTATACTTCCATTTCATATTGATCTTTAATTACTCGTAATAAAATATTGTAAAATGAGTAAGTTTGTTATCCCCTTCCCAATAGAAGTTAGAATGATCAATCATGGTCCAAACTTCCCATGCTTTAGCACAATCTCTCGTAATACTTGGATGGGATCATGGTGTTCCAAAGCCACTGCACTGAGGGGGAGTTATGGTGCAATGTGGCAGCTTCGTAGGCAAATGACAAGGAGAAGCGATTTTCACACACAAAGGGGGAAGAGGGAAAATCATGGGTGTTTGAGTTTAGGTTATGGAGGCTGAAAACTCTGTCAAGCAAGGCACAGGGCACCTAGAAGGAAATGGAATCAAAACACCAAGTGTTGTTAGTAATACAAGAAGCAACAATTGTGGTAATTTTTCCATGGTGGAGCGGACCTTGTATTAGTCTACGCGAAGTCCCAATGCCTTGCCAATTATCAAACCATAAAGAGATATCCTTCCCACATCCAATATATGTTATTCTTCACCCTTTACCTATACTCTTCCACACCGGGCAATTATACCCAAATTTTGTAACATGGTTCGGATGAACATTTTTGGGCTGGATTCAGAGAGTGGCTTAATTCTCATCCCTGTGACTTATTTTTCATCCCAGTTTTTCCCTGGATATAGTGTTGAAGTGAGATGACTATGAATTCATAGGCTTCCTCTCTCTTTTGGAAGGGAAGTGTTAGCTTTTGAGACTAAGTGTTACCTCTTTTCCCCTTCATTCTCTGCCCAAGAAAATCATTGCAAGTTTGTCAAGATCATTAAGAGTGACAATGGGAAGAAAATTGGCTTGCGTAGTAATTGCGTATAGTAATTGGGGATAGTTTTTAGGCTCGAAGAAACCAGGAAAAGTCTTCCGGCTAGAAAGGAATTCTGATTTCCAAACAGCTAACTCCATATGCACCTTTTCAACCGTAAATTGCACTTGACTCTCGTTGGGCGCTTATAGGAAACAGCCAAATAGGCATCTCAAGATAGAGGTCTAATTCCTCACTCTCTCTCACATAATAGTGATTTGGAAAAGGAATTTAGTATCCAATGGGGTGTTAGGGGAGAAGGTAATGCAACTTTTTTTCTCATTTATTTTTTGGCCCGACGGGTTACAAAAAGTACCAAGAACCTCTTTCAAAGTGGAAGTCATTGTTTCATCAACCCTATAAAAGAGAAGAAGGTTGTCAGCAAAGAGGAAATGGGAAATTGGGACCTTTTTTCAACCTACCCAGTGTAACGTAATTCGCTTTTTCAATTCGCGGTTCGCCCAAAATGGGACAAAAATAGGTGAAAATCGACCATAATTCGCTCTTTTCGGATCGCAATTCGCAGGGAGATTAGGGTATTATGTAACACTGAACCTACCAAAAGATAGTCCAAAACTAGACTCAAAGGCTTTGGTAATCATGCAGGAGGCATCCAGACAAATGTTAAATATATAGGTTGACATTGGGTCTCCTTGCGAAGACCTCTTGAGTGGGGGGAAGGACTCGTTTTTCGCCCATCCCCCTCTCCTTGATGAAGCTATTTTCAATATCCCCCTCCACTTGATGAAGCTATTTTGATTTTAGAAATCCGATTGGGGGAAGGGTTTAAGCCTATTAACTAAGAGTCTAAGACTTTGGTGGCCAATTTGTACAAAGTATTGCATAGACTTATCGGGCGAAAGTGTTTGACCGTTTCTGGATGGTCTTGCTTTAAGGCAAATGAGGGCATGACACAACTTATCGGGTACTTTACCTTGTAGAAACCAGGATCGCTACACACACATGTGACATGACGACCTATCTCCCAGGAACGTTGGTAGTAAATGCGGTGAGGCATTGTTTATTTCTAAGTCCACGAGAGGGAAACCTACTGAAATTGAGCTAGATGGTGGGATTTGATTAGGAGCACAATTTTCATGACAGTAAGAGTAGTGATTGACAAAGAAATTTCGGATAGCAAGCACAACTGGATCATCAACATCATTATTTATAGCTCTCATTCTATTTCTTTGCCTTCTCACAGTGACTGTTTTATGGAAGAAACAAGTATTTTCTCTTTCTTTGGGAACCCAATTATTTCTACTAAGCTAAAGACTTTCTTCCTTATGTAAGATGAAAATGAGTTCATTTTGAACGTCTCTTTCAAGGTCATGATGGAAGTGGGAATGAGGATGGTTTGCCAAATAAAGATGACAAAGACCTCATAGTTGACGAAACCTTTACTGGGAAATCCTGGCAGCTTTTGAAAGCTTTTTGCATCAACCCTGAATCCCGAAGTTAGCATTAAACTAGATGGACTATATAGGAATCAGAATCTAACTACTATAGAATTAATGCTAATCTCCTCTTCGACCTCATAGTTAACAAGTAACAACCAAAGAACACAGTTGCTCAAATGATACAATCAAATGATCATTTTCATCTAGGGGGTGTTTGGTATGTGGGAATTAAGGGTGGAATAGGGAGTTCTATCCCATCCAAATAAATTCCTTTTTGTTTTGGGGGATTGGGAATAAATTGAAAGGTGGAAACTGATAATAGAAATAGGTTACTCCTATAATTTCTAAAGCAAAACTTGACTCTTTAACTTGTTCAGTTCAGTGTATTAATCATACTACTTTATCTTCAGTCTTCCAGTTATCTATACCGAGTGTTTATGGAATAATCTTCACACAGGTCTATCATTGAAGACCCAGGAGCTAACGGCTATATACTTAATCATGAGAATCGTAGCTTATTTTGGATTCTTACGTGATTTACATGTTGTACTTGACTCAATTACCCTTATATGTACTCTATGGGTGATCTATATGGTACGATTTAAGTTAAAGGACACCTACATGCAAGAGCTTGATAACATGCCTTTGTATTACGTGGTAAGCAACTTTTCTCTTGCCCAGTATTAGATCTTTTCTTTTTCAATATGCTTAATTAATTTGACAATGTTTTGCCAAGCATATGTACACTCTTCCTACTATAATGCATCTATATTTAATGCATTACTGAAAAGAAAACCTGACATCACAAAGAATTATTAGTGTGAACATTTTTTTTTTTTTTTTTTACAAATGTATTTGTTAAGTCTAGTATACTTCTTGCAAGTATAGAGATATGGACCATAGCACGAATGACAGTGACATGTTATGTTTGTTTTTCGCAGTTGGTGCCTTGTGCCATTGTTGCGGTAATCGGCCATCCTGGATATCAACTTCACATTTTCACAAGATTCTTGTTTGTGTATCTTATGGCAATTGAAGCTGTTTCAGTGCTCCCTCAACTTCGTTTAATACAAAATGCTAAGGTTTGTTATACTAATACGAGCTTGGATACGTTGGAAATATGTTATGTAATGTCTATACCATAAACAAGCTCACTTCAGGTAGTGGATGGCAACCTACAAATTTCTTTGTTAGTTTCAGTAAGAGTGTGAATTGGCTCATGTGTTGTTCAGAATTGAGCATTGATTTTGGCCATCTATTCAAGTCCATTTTTAGCAAAGCATGAGTTTGCTTACATTGGTAAACAAGTTTGCCTAAAGTTGATTAGTTTGTAGGCAAAAGTGTGATGAACTACTTGTTCTCATGCATTTAGAAACAATTGCTAAATTGCTTCTTATTGATCGATTCTTTTAATTCATTTTCTTTAGACAATTTTACATAACTGCAAATCTTGAATTTAGTTGGATAGTTGCATTTTCTATGCAATTTGTATCGTAGTTTACAACCACTTTACGTTGCTGAATTAGGTGACTCTCTATACTTATAGTTTGAAGGCGTTGAACACTAAATGATGGTGTGAAGTTTGCACTTCATAAATAATTATTAGACTGCTTGTATTTGATTTACATTTGGATCACAGATATAAATATCTTTTCAAGTCAAGCTATGGAGCATTTGCAGCTATTGATAATTCCTTATTAACATTTTCTTTAAAATTGTTCTGTCACAGATTGTTGAACCATTTACTGCTCATTATGTCTTTGCCTTGGGTGTTGCAAGATTCCTCTCATGCGCAAATTGGATATTTATGGTCAGGAATTCATAATACACCCTTTACTTTACTGTATGTCATACTCCGTATTGAAAGTTGTCTAATATTCCTAGACTGATCTCCATATATTTTGCAACTACATACAGCTTATTGACAGCAAGGGAGAAATCCTAACGCAAATAGGGAACGGACATCTTTATTTACTGGTGGCTCTTCTTTCTGAGGTGGTTCATACTTTCATCTTGGCAGACTTCTGTTACTACTACGTCAAGAGGTATTCAAACTCCTCAGTAATGCATATATCCATCATTTCATCCGACTGCATTTTTTGTCACGACATTAGTTTACAATATTCTGATCAATAAATTTACAATGAGCTTTTTAATTACAAAGTACAAAATCTAAAAGGAAAATGGATTTTGCAGTGTTATGGAGGGACAACGCATGATGAGGCTTCCTTCGCTAGTCTGA TACATAGGATAAGGCAGTCCTATTTGATAATAGACAATCCTATTCCTATCTACTTTGGTAGTGTATTTGATATGTAGCCAAAAACATGGGTCCAACTCACGACAATAACCTCAGGACTCCGACCTTAGCGCAGCCCCTCCCTTCCCCTTGAATTAGTCAATCAATTCCAATAATTTCCCGTCCTCACTCATTCACTCTCTCCAATCTCCATCTCTCTCCCTCTCTCTCCCCAAAATCTGGTACACAATTGAATTGAATAGAATTGTAGAATTAGTACAGAGATGGGTGATAAAAGAGCAATTCCGACGCCGGTGAAGCGGGTAGGAAGATGGATTCGAAGCCGATCGGTGCGAGAGCAAGTCACCATGAGCGTCGTTGCAGCGCTAATATTGCTCGTTATATTGAAATTTTCCGTCAAAGGCCAAAACAACATGTTTATTTTTACTCAAATTGCTCATTCTGCTGGAATCTTGGTCTTAACTTACAAGCTCTCCGTCACCAAAACTTGTTCTGGTCTATCATTGAAGACCCAGGAGCTAACGGCTATATACTTAATCATGAGAATCGTAGCTTATTTTGGATTCTTACGTGATTTACATGTTGTACTTGACTCAATTACCCTTATATGTACTCTATGGGTGATCTATATGGTACGATTTAAGTTAAAGGACACCTACATGCAAGAGCTTGATAACATGCCTTTGTATTACGTGTTGGTGCCTTGTGCCATTGTTGCGGTAATCGGCCATCCTGGATATCAACTTCACATTTTCACAAGATTCTTGTTTGTGTATCTTATGGCAATTGAAGCTGTTTCAGTGCTCCCTCAACTTCGTTTAATACAAAATGCTAAGATTGTTGAACCATTTACTGCTCATTATGTCTTTGCCTTGGGTGTTGCAAGATTCCTCTCATGCGCAAATTGGATATTTATGCTTATTGACAGCAAGGGAGAAATCCTAACGCAAATAGGGAACGGACATCTTTATTTACTGGTGGCTCTTCTTTCTGAGGTGGTTCATACTTTCATCTTGGCAGACTTCTGTTACTACTACGTCAAGAGTGTTATGGAGGGACAACGCATGATGAGGCTTCCTTCGCTAGTCTGA ATGGGTGATAAAAGAGCAATTCCGACGCCGGTGAAGCGGGTAGGAAGATGGATTCGAAGCCGATCGGTGCGAGAGCAAGTCACCATGAGCGTCGTTGCAGCGCTAATATTGCTCGTTATATTGAAATTTTCCGTCAAAGGCCAAAACAACATGTTTATTTTTACTCAAATTGCTCATTCTGCTGGAATCTTGGTCTTAACTTACAAGCTCTCCGTCACCAAAACTTGTTCTGGTCTATCATTGAAGACCCAGGAGCTAACGGCTATATACTTAATCATGAGAATCGTAGCTTATTTTGGATTCTTACGTGATTTACATGTTGTACTTGACTCAATTACCCTTATATGTACTCTATGGGTGATCTATATGGTACGATTTAAGTTAAAGGACACCTACATGCAAGAGCTTGATAACATGCCTTTGTATTACGTGTTGGTGCCTTGTGCCATTGTTGCGGTAATCGGCCATCCTGGATATCAACTTCACATTTTCACAAGATTCTTGTTTGTGTATCTTATGGCAATTGAAGCTGTTTCAGTGCTCCCTCAACTTCGTTTAATACAAAATGCTAAGATTGTTGAACCATTTACTGCTCATTATGTCTTTGCCTTGGGTGTTGCAAGATTCCTCTCATGCGCAAATTGGATATTTATGCTTATTGACAGCAAGGGAGAAATCCTAACGCAAATAGGGAACGGACATCTTTATTTACTGGTGGCTCTTCTTTCTGAGGTGGTTCATACTTTCATCTTGGCAGACTTCTGTTACTACTACGTCAAGAGTGTTATGGAGGGACAACGCATGATGAGGCTTCCTTCGCTAGTCTGA MGDKRAIPTPVKRVGRWIRSRSVREQVTMSVVAALILLVILKFSVKGQNNMFIFTQIAHSAGILVLTYKLSVTKTCSGLSLKTQELTAIYLIMRIVAYFGFLRDLHVVLDSITLICTLWVIYMVRFKLKDTYMQELDNMPLYYVLVPCAIVAVIGHPGYQLHIFTRFLFVYLMAIEAVSVLPQLRLIQNAKIVEPFTAHYVFALGVARFLSCANWIFMLIDSKGEILTQIGNGHLYLLVALLSEVVHTFILADFCYYYVKSVMEGQRMMRLPSLV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09937.1 vs. NCBI nr
Match: gi|902227462|gb|KNA20699.1| (hypothetical protein SOVF_049880 [Spinacia oleracea]) HSP 1 Score: 528.1 bits (1359), Expect = 9.200e-147 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
BLAST of Spo09937.1 vs. NCBI nr
Match: gi|731368637|ref|XP_010696254.1| (PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 438.7 bits (1127), Expect = 7.400e-120 Identity = 215/275 (78.18%), Postives = 246/275 (89.45%), Query Frame = 1
BLAST of Spo09937.1 vs. NCBI nr
Match: gi|731368634|ref|XP_010696253.1| (PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 403.7 bits (1036), Expect = 2.600e-109 Identity = 198/275 (72.00%), Postives = 240/275 (87.27%), Query Frame = 1
BLAST of Spo09937.1 vs. NCBI nr
Match: gi|731368630|ref|XP_010696251.1| (PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 400.2 bits (1027), Expect = 2.900e-108 Identity = 199/275 (72.36%), Postives = 239/275 (86.91%), Query Frame = 1
BLAST of Spo09937.1 vs. NCBI nr
Match: gi|902227464|gb|KNA20701.1| (hypothetical protein SOVF_049900 [Spinacia oleracea]) HSP 1 Score: 393.3 bits (1009), Expect = 3.500e-106 Identity = 196/275 (71.27%), Postives = 236/275 (85.82%), Query Frame = 1
BLAST of Spo09937.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP84_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049880 PE=4 SV=1) HSP 1 Score: 528.1 bits (1359), Expect = 6.400e-147 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
BLAST of Spo09937.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B7X2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178780 PE=4 SV=1) HSP 1 Score: 438.7 bits (1127), Expect = 5.100e-120 Identity = 215/275 (78.18%), Postives = 246/275 (89.45%), Query Frame = 1
BLAST of Spo09937.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E1W8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178770 PE=4 SV=1) HSP 1 Score: 403.7 bits (1036), Expect = 1.800e-109 Identity = 198/275 (72.00%), Postives = 240/275 (87.27%), Query Frame = 1
BLAST of Spo09937.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAV7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178740 PE=4 SV=1) HSP 1 Score: 400.2 bits (1027), Expect = 2.000e-108 Identity = 199/275 (72.36%), Postives = 239/275 (86.91%), Query Frame = 1
BLAST of Spo09937.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMG1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049900 PE=4 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 2.500e-106 Identity = 196/275 (71.27%), Postives = 236/275 (85.82%), Query Frame = 1
BLAST of Spo09937.1 vs. ExPASy Swiss-Prot
Match: ERD2_SCHPO (ER lumen protein-retaining receptor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erd2 PE=3 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 5.100e-20 Identity = 67/218 (30.73%), Postives = 120/218 (55.05%), Query Frame = 1
BLAST of Spo09937.1 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein-retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.500e-19 Identity = 73/227 (32.16%), Postives = 121/227 (53.30%), Query Frame = 1
BLAST of Spo09937.1 vs. ExPASy Swiss-Prot
Match: ERD2_DICDI (ER lumen protein-retaining receptor OS=Dictyostelium discoideum GN=kdelr PE=3 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 7.300e-19 Identity = 67/227 (29.52%), Postives = 122/227 (53.74%), Query Frame = 1
BLAST of Spo09937.1 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein-retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.300e-18 Identity = 68/229 (29.69%), Postives = 126/229 (55.02%), Query Frame = 1
BLAST of Spo09937.1 vs. ExPASy Swiss-Prot
Match: ERD23_XENLA (ER lumen protein-retaining receptor 3 OS=Xenopus laevis GN=kdelr3 PE=2 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.600e-18 Identity = 72/223 (32.29%), Postives = 116/223 (52.02%), Query Frame = 1
BLAST of Spo09937.1 vs. TAIR (Arabidopsis)
Match: AT3G25160.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 285.8 bits (730), Expect = 2.800e-77 Identity = 143/272 (52.57%), Postives = 206/272 (75.74%), Query Frame = 1
BLAST of Spo09937.1 vs. TAIR (Arabidopsis)
Match: AT1G19970.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 283.9 bits (725), Expect = 1.100e-76 Identity = 139/269 (51.67%), Postives = 201/269 (74.72%), Query Frame = 1
BLAST of Spo09937.1 vs. TAIR (Arabidopsis)
Match: AT1G75760.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 276.2 bits (705), Expect = 2.200e-74 Identity = 137/269 (50.93%), Postives = 197/269 (73.23%), Query Frame = 1
BLAST of Spo09937.1 vs. TAIR (Arabidopsis)
Match: AT4G38790.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 273.1 bits (697), Expect = 1.900e-73 Identity = 141/270 (52.22%), Postives = 189/270 (70.00%), Query Frame = 1
BLAST of Spo09937.1 vs. TAIR (Arabidopsis)
Match: AT2G21190.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 272.7 bits (696), Expect = 2.500e-73 Identity = 141/265 (53.21%), Postives = 187/265 (70.57%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09937.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09937.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09937.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo09937.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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