Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAAGAAAGAGAGAGAATTGTCAAACATTAAACAGTTGTCTTGCCAAGTCAATGGTCTCATACCAAATTGTAGTATACTAAATTATAATTATAATTATAATAACAACCCCCCCTTTCATTTGCAATTTTATTCAATCTTCAAACCCACCTTCCCTCATTATATTTCTTCTTCAACTCCTTTGCTCAATAATTGTTCTTCATCATTTTCCTTGAAAAACCCACCTAATTTCCTCTTATTTTTCTACCTTAATTCTTCATTAGTTTTCATATAATATCCTCTGTTTTCCCAGGTTTTGATATATTTCTAAGTTTGCTGCTTTAATGGCTGTAAGTTTCTCGTTATCCTCAACAGTTTCTTATTCTTTGACCTTTTCATACTGCTTTTTTTTTTTTGGATTAACTTTGCTAGATTTCTTGTTTGTTTTCTGGGTTTTGATTATTTCTCATTTGATTTTTTGTTTCGATTTTTTGATGGTGTAAGATCAAAGATGTTTAAGCTGCTTTGCTGAGTCTGTTCATTATAGTTTGTTTAACTGATGATTTGGGTTTGAATTTGCAAGAAAGTTTAGTATGTCAATGATTTTGATGAATTGTCTGCAATATTCTTGTAAATTTGGCACTAACGGCTAGCAATATTCAAATTTGGCACTAACAAAGTATGTTTTTAATGTAAGACTGGAAAGATTTCATAGTAGATAGTATTTTACAAGATGGGGGTTCGGGTTTAACCGTTTAAGCATCGGAATTGTTGTGAATCATCAGCCGATGAGTCGATGACCCTTTTATCGGACAATGATGTTTCCAATGCAATATTTACTTCTGTCAAGTCAATTTTAGTTATACAGACAATACGTCCGTGTCAAATGTAACCTTTTTCCTAGGGTGGGGTGATGATAATATTCATGATTGTTTAATATCTTTAATAGCAACAAATCTATGTTGATATAGAACATAGATACAAATCTAATGAACTAGTAGAACTTCCATTATTAACATGTGTTTCTGGATGGCTTTTGGTTATCTGATTTCCTCTATGCATGATTAGCCTGTAAGAAATGATGATCGTGTTGTTTTATCTGATGTGAATGTGTGCTTATGAAAGTATGGCACCGAACTTTTTTCAGTAGTTTTCGTCATGTATTCTAATTTATAAGTAGTTAACATGAAAATCTGGTTAATGTACTTGAAAATTTACAGTAACTAACTGTTAAAGATGAAGCTTGGTGCTGAAAATGAAGTATTAATTTGAACCTCTCTGTGTTTTCTGATATCAGCAGTCTAAAGTACCCAAGTTTGGTGCGTGGGAAGGTGGAGAAAACTACACAGTTTTCTTCGACAATGCACGAAAGAAGAAGACTAATGGACAGATGATAAACCCGAATGACCCTCAAGACATGGCTGATATGTTTCCACAAATCGGAGGTCCACCACCTCAGGCTCCTAAAGCCGAACCCAAAGGACAACAATCCAAAACCCCTGAATTTGGTGCCTGGGACAATGGAGAGAACGTTGGCTATACCGAGTATTTTGAAAGTAAAAGGAAAACCAAGAACGGTGAACCCACAGCGTCAACAAATGAGCCACAGCTGAACCGAGACATGCATCCTCGTAAGGATCCTCCATCTAAACCAGAAGCAGCACGGGCAAAGGTGCCACCGTTTGGTGGTTGGGAGAATGGAGGTGAAGGTGGTTATACCCAAAGCTTTGAAAATGTTAGGAAGAATAATAATAAGAATGGGCGTACTGTTACACCAGAACCTTCTTCTGACGCCCCTCAGTTGAACCGCGATGTAGGTGAGCCAGCTCCAGCTAAAGAGGGCCGTGCTAAGGTGCCTGAGTTTGGTGGTTGGAATGAGGGAGAAAATGGCGCATACACTGCTTATTTTGAAAATGCTCGGAAAAATAAGAACGCAGGGCCTGTGCCAGACCCTGCTGAGGTCAACAATAGAGCTCGGCCTTCTACTGGTGCTGGAACCAAAAATAAGGCAGATGATCCTCAGTTGAGAAATAATACAAGTAGAGGGTCTAACTATTCTGTGGCTACTTCTGAAGCTCCTTCCAGAAATGGAAAGCAGAACACAGGGGGCCAATCACCAATCCAGCAGAAAGCAGGCAGGCTTCAGCAAAAACCCCCAGCTAGCCGAGGAAGTCAAACTGTAAGTTCTCCTTAGTCTTTTCAAAATGTCCTCCCACCAAACGAGCTTTGGTTTCTTCCTCGTAAGGAAAACATATATAGGGCATGTTTGGTATAAATTTGGGAAAGGAAATAAATAAGGAAAAGGGTAATGTTAACTGTTACCATTATAAGTTGTTTGATATACCTTGGGAAATTAATCACTCGTAACAAATAGAGGTTGATGAGGGTAACAATTTTGTTACCACATGGTTGGGAGATGTAACAAATGATGGTAATTGTTACCCTTAGGAATCTAAGTAATAACTTTGTGTTTAAACCTTTGCAGCCAGAGAGAGGGACAGCTATTCCAGCATGGGGTGTCTGGAACACTGATCCTCAGCAAGCTGAGGGTTTTACGGGTGCTTTCACAAGGGCTAAAGAGGAGAGGAACACGCCCCTTAACTCGAATGCTCCACAACGCTATCAACAACAACATCAGAGATCACAAGAGGAAAAGGTAATTGTTACATCACTGTACTGTAATCTGCAGTATAATAGATTTTGTTTATAGTCACTAATATTTATTTTGGTTTCTGGTTTAATTTACAGAAGGGATGTTGCTTTGGTTGGTTTTGATAATGATCTTCATCTAGTTGTTTATCCAATATATACGATGAAAGCCAAAGGCATGGATAGTCAAATTAAAGAGCAAAAAAAGGAGGTTGAAGAACAAGAATGATGATTTTCTGACTGTGGGTGTTACTGTGTGCTTTTTCATTTCTTTTTGGGGGGGAGGGTTGGGTGGTTCATTAGTTACTATTTTTGAGGATCCTATATATGATTAAGATTCTTTGAAGTTGTTGGCAAATGTTTTGAAGTAGACTATGGACTTCCCTTTGTAACAATCTTGTTATACATAAATTTGAAGCAAATTTCTTG GAAAGAAAGAGAGAGAATTGTCAAACATTAAACAGTTGTCTTGCCAAGTCAATGGTCTCATACCAAATTGTAGTATACTAAATTATAATTATAATTATAATAACAACCCCCCCTTTCATTTGCAATTTTATTCAATCTTCAAACCCACCTTCCCTCATTATATTTCTTCTTCAACTCCTTTGCTCAATAATTGTTCTTCATCATTTTCCTTGAAAAACCCACCTAATTTCCTCTTATTTTTCTACCTTAATTCTTCATTAGTTTTCATATAATATCCTCTGTTTTCCCAGGTTTTGATATATTTCTAAGTTTGCTGCTTTAATGGCTCAGTCTAAAGTACCCAAGTTTGGTGCGTGGGAAGGTGGAGAAAACTACACAGTTTTCTTCGACAATGCACGAAAGAAGAAGACTAATGGACAGATGATAAACCCGAATGACCCTCAAGACATGGCTGATATGTTTCCACAAATCGGAGGTCCACCACCTCAGGCTCCTAAAGCCGAACCCAAAGGACAACAATCCAAAACCCCTGAATTTGGTGCCTGGGACAATGGAGAGAACGTTGGCTATACCGAGTATTTTGAAAGTAAAAGGAAAACCAAGAACGGTGAACCCACAGCGTCAACAAATGAGCCACAGCTGAACCGAGACATGCATCCTCGTAAGGATCCTCCATCTAAACCAGAAGCAGCACGGGCAAAGGTGCCACCGTTTGGTGGTTGGGAGAATGGAGGTGAAGGTGGTTATACCCAAAGCTTTGAAAATGTTAGGAAGAATAATAATAAGAATGGGCGTACTGTTACACCAGAACCTTCTTCTGACGCCCCTCAGTTGAACCGCGATGTAGGTGAGCCAGCTCCAGCTAAAGAGGGCCGTGCTAAGGTGCCTGAGTTTGGTGGTTGGAATGAGGGAGAAAATGGCGCATACACTGCTTATTTTGAAAATGCTCGGAAAAATAAGAACGCAGGGCCTGTGCCAGACCCTGCTGAGGTCAACAATAGAGCTCGGCCTTCTACTGGTGCTGGAACCAAAAATAAGGCAGATGATCCTCAGTTGAGAAATAATACAAGTAGAGGGTCTAACTATTCTGTGGCTACTTCTGAAGCTCCTTCCAGAAATGGAAAGCAGAACACAGGGGGCCAATCACCAATCCAGCAGAAAGCAGGCAGGCTTCAGCAAAAACCCCCAGCTAGCCGAGGAAGTCAAACTCCAGAGAGAGGGACAGCTATTCCAGCATGGGGTGTCTGGAACACTGATCCTCAGCAAGCTGAGGGTTTTACGGGTGCTTTCACAAGGGCTAAAGAGGAGAGGAACACGCCCCTTAACTCGAATGCTCCACAACGCTATCAACAACAACATCAGAGATCACAAGAGGAAAAGAAGGGATGTTGCTTTGGTTGGTTTTGATAATGATCTTCATCTAGTTGTTTATCCAATATATACGATGAAAGCCAAAGGCATGGATAGTCAAATTAAAGAGCAAAAAAAGGAGGTTGAAGAACAAGAATGATGATTTTCTGACTGTGGGTGTTACTGTGTGCTTTTTCATTTCTTTTTGGGGGGGAGGGTTGGGTGGTTCATTAGTTACTATTTTTGAGGATCCTATATATGATTAAGATTCTTTGAAGTTGTTGGCAAATGTTTTGAAGTAGACTATGGACTTCCCTTTGTAACAATCTTGTTATACATAAATTTGAAGCAAATTTCTTG ATGGCTCAGTCTAAAGTACCCAAGTTTGGTGCGTGGGAAGGTGGAGAAAACTACACAGTTTTCTTCGACAATGCACGAAAGAAGAAGACTAATGGACAGATGATAAACCCGAATGACCCTCAAGACATGGCTGATATGTTTCCACAAATCGGAGGTCCACCACCTCAGGCTCCTAAAGCCGAACCCAAAGGACAACAATCCAAAACCCCTGAATTTGGTGCCTGGGACAATGGAGAGAACGTTGGCTATACCGAGTATTTTGAAAGTAAAAGGAAAACCAAGAACGGTGAACCCACAGCGTCAACAAATGAGCCACAGCTGAACCGAGACATGCATCCTCGTAAGGATCCTCCATCTAAACCAGAAGCAGCACGGGCAAAGGTGCCACCGTTTGGTGGTTGGGAGAATGGAGGTGAAGGTGGTTATACCCAAAGCTTTGAAAATGTTAGGAAGAATAATAATAAGAATGGGCGTACTGTTACACCAGAACCTTCTTCTGACGCCCCTCAGTTGAACCGCGATGTAGGTGAGCCAGCTCCAGCTAAAGAGGGCCGTGCTAAGGTGCCTGAGTTTGGTGGTTGGAATGAGGGAGAAAATGGCGCATACACTGCTTATTTTGAAAATGCTCGGAAAAATAAGAACGCAGGGCCTGTGCCAGACCCTGCTGAGGTCAACAATAGAGCTCGGCCTTCTACTGGTGCTGGAACCAAAAATAAGGCAGATGATCCTCAGTTGAGAAATAATACAAGTAGAGGGTCTAACTATTCTGTGGCTACTTCTGAAGCTCCTTCCAGAAATGGAAAGCAGAACACAGGGGGCCAATCACCAATCCAGCAGAAAGCAGGCAGGCTTCAGCAAAAACCCCCAGCTAGCCGAGGAAGTCAAACTCCAGAGAGAGGGACAGCTATTCCAGCATGGGGTGTCTGGAACACTGATCCTCAGCAAGCTGAGGGTTTTACGGGTGCTTTCACAAGGGCTAAAGAGGAGAGGAACACGCCCCTTAACTCGAATGCTCCACAACGCTATCAACAACAACATCAGAGATCACAAGAGGAAAAGAAGGGATGTTGCTTTGGTTGGTTTTGA MAQSKVPKFGAWEGGENYTVFFDNARKKKTNGQMINPNDPQDMADMFPQIGGPPPQAPKAEPKGQQSKTPEFGAWDNGENVGYTEYFESKRKTKNGEPTASTNEPQLNRDMHPRKDPPSKPEAARAKVPPFGGWENGGEGGYTQSFENVRKNNNKNGRTVTPEPSSDAPQLNRDVGEPAPAKEGRAKVPEFGGWNEGENGAYTAYFENARKNKNAGPVPDPAEVNNRARPSTGAGTKNKADDPQLRNNTSRGSNYSVATSEAPSRNGKQNTGGQSPIQQKAGRLQQKPPASRGSQTPERGTAIPAWGVWNTDPQQAEGFTGAFTRAKEERNTPLNSNAPQRYQQQHQRSQEEKKGCCFGWF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10023.1 vs. NCBI nr
Match: gi|902228608|gb|KNA21186.1| (hypothetical protein SOVF_045740 [Spinacia oleracea]) HSP 1 Score: 731.5 bits (1887), Expect = 7.200e-208 Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 1
BLAST of Spo10023.1 vs. NCBI nr
Match: gi|731347565|ref|XP_010685052.1| (PREDICTED: RPM1-interacting protein 4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 520.0 bits (1338), Expect = 3.300e-144 Identity = 280/378 (74.07%), Postives = 306/378 (80.95%), Query Frame = 1
BLAST of Spo10023.1 vs. NCBI nr
Match: gi|870853806|gb|KMT05673.1| (hypothetical protein BVRB_7g168030 isoform C [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 243.4 bits (620), Expect = 6.000e-61 Identity = 160/267 (59.93%), Postives = 182/267 (68.16%), Query Frame = 1
BLAST of Spo10023.1 vs. NCBI nr
Match: gi|731347567|ref|XP_010685053.1| (PREDICTED: uncharacterized protein LOC104899541 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 243.4 bits (620), Expect = 6.000e-61 Identity = 160/267 (59.93%), Postives = 182/267 (68.16%), Query Frame = 1
BLAST of Spo10023.1 vs. NCBI nr
Match: gi|870853805|gb|KMT05672.1| (hypothetical protein BVRB_7g168030 isoform B [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 243.4 bits (620), Expect = 6.000e-61 Identity = 160/267 (59.93%), Postives = 182/267 (68.16%), Query Frame = 1
BLAST of Spo10023.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNT7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045740 PE=4 SV=1) HSP 1 Score: 731.5 bits (1887), Expect = 5.000e-208 Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 1
BLAST of Spo10023.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C033_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167970 PE=4 SV=1) HSP 1 Score: 520.0 bits (1338), Expect = 2.300e-144 Identity = 280/378 (74.07%), Postives = 306/378 (80.95%), Query Frame = 1
BLAST of Spo10023.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C0G9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g168030 PE=4 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 4.200e-61 Identity = 160/267 (59.93%), Postives = 182/267 (68.16%), Query Frame = 1
BLAST of Spo10023.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ERG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g168030 PE=4 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 4.200e-61 Identity = 160/267 (59.93%), Postives = 182/267 (68.16%), Query Frame = 1
BLAST of Spo10023.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BWW1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g168030 PE=4 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 4.200e-61 Identity = 160/267 (59.93%), Postives = 182/267 (68.16%), Query Frame = 1
BLAST of Spo10023.1 vs. ExPASy Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 2.000e-8 Identity = 54/206 (26.21%), Postives = 96/206 (46.60%), Query Frame = 1
BLAST of Spo10023.1 vs. TAIR (Arabidopsis)
Match: AT3G25070.1 (RPM1 interacting protein 4) HSP 1 Score: 61.6 bits (148), Expect = 1.100e-9 Identity = 54/206 (26.21%), Postives = 96/206 (46.60%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10023.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10023.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10023.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo10023.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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